BAC Information

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BAC

Clone NameB6Ng01-039F06
Chromosome19 (Build37)
Map Location 10,273,062 - 10,431,928
singlet/doubletdoublet
Overlap geneFen1, 1810006K21Rik, Gm98, Dagla
Upstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1
Downstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F06.bB6Ng01-039F06.g
ACCDH866627DH866628
length1,135994
definitionDH866627|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F06, 5' end.DH866628|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,273,062 - 10,274,198)(10,430,939 - 10,431,928)
sequence
gaattcttgactttcttgttggataccaattgttaggctatcgggaccac
accctgtaagccactttagtgaatttccttttaacatatacatagctcat
tctctgttgttctctgggaaaacctaaatgtattagtactcaaaaacttt
cattcttcccggacacctgaaatctcagtaagaacaaggcttcttttatt
tacctacttgttttataggtttgtggagacaggatttgtgtagccctggc
tggatgttataagatagtttatctaaactacaagactgttccaggggact
cctttatctcacagatggtggaacgtgtgaaatccagtcaagctatgcaa
actcctaagtacaaaaggctggtgccaccacagctgctgtggccacctta
catgggcacagcgccaccttgtggtcagtcctaaactaaccacttgttac
cagggcaatcccagccaggctgtaggggattttagagggggaaaggaaac
cattatatttattctacaggaaactaaggcactcagggtgttttcaaaca
ttcagacacattctggtcacttttataattttattgttttttttttctct
tcacatcttttaaaatagaaatagcctatgaacaacagtttcttctccca
aaacctcaattcaattgattgcctcagaaaggctgtcagaacatcacttg
gaggcacaggtcagtggcacacttaatgcctttgccctggggtcaatccc
caacactggagaggggagagacaaaaacaaaaaactacaaatcaaaactt
aaacactgccatctcactccctgcacaactactggactcagcaggcagca
agttcaaatttctgcccacaaaaatcagctggtcagtactaaatctgttg
tcagccagacttctctctgctcgtctctttgcagttcttccatcagcgaa
tcccaggctgatgggcatctttcagggcacagtgaaattagaggagcagt
agtcagtcagttctagtcacctttcctcaccagctggcagcttggaactt
atcctcagcctgcgctcccggctttatcttctttcttcttagaacattgc
tccgcagttgcacagaacattgactacagggtcca
gaattcctagaacctcctagctcctgggagggtccaggactttcgctatg
ccttccaggcccaggctgctgattggcatacagacatgcaagccgcaggc
agctggctggccagcgggcatagcaggagggtaaattccacatttgcatt
tggatgttcctggccccaaggactgctgacctttactgctgttacttccg
cccctcttccaggcctcctgggctcagctaggctggccatcaattcccca
gcctcaagggacctgggaaatgccctgcagacccccagcttgctctcctt
acttgtcctattctaccctgactcaacatcagctgctgtcccctccccca
ctacccccacaactccaggatcctcctccacccccacccctcacagcgag
tcaccggctgatgcaaaggcagcttgggcccttggattagcagtgtcaag
gagacgtcagtcgcccccggctgctgtgacgtctcccaggggaatccccg
tctatgctgagtggcagtagtgctgagcactgagcactgtgcgctgtcag
cttttctgggctcagcagtcaggcctgcacctctgggagtagaaatgctc
cccagcccacctggtccccaaggactcttgttacgggtggcttgactagc
cagctgactgagcaaatcccacaagatttttgtaaattaaaatccatctc
ccagatggctcagtacaaaagagttcttgctttacaagcatagagatccg
tgttcgaatcctcagaacttacataaaaagctgggtgtggtagagtgctc
ttggggaggcagacatttgataatcctgtgagatacccaaggtgtagtca
gaggcaactgctgtttttcctctgccttctaatcatatgtacgtggatac
acacctgcacacacacacaaaagattctttatttttttctttaaaaactt
ctcgtattttatgtacatgggtatcttacctgaatgcatgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10273062_10274198
seq2: B6Ng01-039F06.b_46_1180

seq1  GAATTCTTGACTTTCTTGTTGGATACCAATTGTTAGGCTATCGGGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTTTCTTGTTGGATACCAATTGTTAGGCTATCGGGACCAC  50

seq1  ACCCTGTAAGCCACTTTAGTGAATTTCCTTTTAACATATACATAGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAAGCCACTTTAGTGAATTTCCTTTTAACATATACATAGCTCAT  100

seq1  TCTCTGTTGTTCTCTGGGAAAACCTAAATGTATTAGTACTCAAAAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGTTCTCTGGGAAAACCTAAATGTATTAGTACTCAAAAACTTT  150

seq1  CATTCTTCCCGGACACCTGAAATCTCAGTAAGAACAAGGCTTCTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCCGGACACCTGAAATCTCAGTAAGAACAAGGCTTCTTTTATT  200

seq1  TACCTACTTGTTTTATAGGTTTGTGGAGACAGGATTTGTGTAGCCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTTGTTTTATAGGTTTGTGGAGACAGGATTTGTGTAGCCCTGGC  250

seq1  TGGATGTTATAAGATAGTTTATCTAAACTACAAGACTGTTCCAGGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTATAAGATAGTTTATCTAAACTACAAGACTGTTCCAGGGGACT  300

seq1  CCTTTATCTCACAGATGGTGGAACGTGTGAAATCCAGTCAAGCTATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCTCACAGATGGTGGAACGTGTGAAATCCAGTCAAGCTATGCAA  350

seq1  ACTCCTAAGTACAAAAGGCTGGTGCCACCACAGCTGCTGTGGCCACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAAGTACAAAAGGCTGGTGCCACCACAGCTGCTGTGGCCACCTTA  400

seq1  CATGGGCACAGCGCCACCTTGTGGTCAGTCCTAAACTAACCACTTGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCACAGCGCCACCTTGTGGTCAGTCCTAAACTAACCACTTGTTAC  450

seq1  CAGGGCAATCCCAGCCAGGCTGTAGGGGATTTTAGAGGGGGAAAGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAATCCCAGCCAGGCTGTAGGGGATTTTAGAGGGGGAAAGGAAAC  500

seq1  CATTATATTTATTCTACAGGAAACTAAGGCACTCAGGGTGTTTTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTTATTCTACAGGAAACTAAGGCACTCAGGGTGTTTTCAAACA  550

seq1  TTCAGACACATTCTGGTCACTTTTATAATTTTATTGTTTTTTTTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACATTCTGGTCACTTTTATAATTTTATTGTTTTTTTTTTCTCT  600

seq1  TCACATCTTTTAAAATAGAAATAGCCTATGAACAACAGTTTCTTCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTTTAAAATAGAAATAGCCTATGAACAACAGTTTCTTCTCCCA  650

seq1  AAACCTCAATTCAATTGATTGCCTCAGAAAGGCTGTCAGAACATCACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAATTCAATTGATTGCCTCAGAAAGGCTGTCAGAACATCACTTG  700

seq1  GAGGCACAGGTCAGTGGCACACTTAATGCCTTTGCCCTGGGGTCAATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGGTCAGTGGCACACTTAATGCCTTTGCCCTGGGGTCAATCCC  750

seq1  CAACACTGGAGAGGGGAGAGACAAAAACAAAAAACTACAAATCAAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGAGAGGGGAGAGACAAAAACAAAAAACTACAAATCAAAACTT  800

seq1  AAACACTGCCATCTCACTCCCTGCACAACTACTGGACTCAGCAGGCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGCCATCTCACTCCCTGCACAACTACTGGACTCAGCAGGCAGCA  850

seq1  AGTTCAAATTTCTGCCCACAAAAATCAGCTGGTCAGTACTAAATCTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATTTCTGCCCACAAAAATCAGCTGGTCAGTACTAAATCTGTTG  900

seq1  TCAGCCAGACTTCTCTCTGCTCGTCTCTTTGCAGTTCTTCCATCAGCGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGACTTCTCTCTGCTCGTCTCTTTGCAGTTCTTCCATCAGCGAA  950

seq1  TCCCAGGCTGATGGGCATCTTTCAGGGCACAGTGAAATTAGAAGGAGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCCAGGCTGATGGGCATCTTTCAGGGCACAGTGAAATTAG-AGGAGCAG  999

seq1  TAGTCAGTCAGGTTCTAGTCACCTCTCCTCCACCAGCTGGCCAGCTGGGA  1050
      |||||||||| ||||||||||||| |||| |||||||||| ||||| |||
seq2  TAGTCAGTCA-GTTCTAGTCACCTTTCCT-CACCAGCTGG-CAGCTTGGA  1046

seq1  AACTATCTCCAGCCT-CGCTCCCGGCTTTATCTTCTTCTTCCTTAAGACA  1099
      |  ||||  |||||| |||||||||||||||||||||  | ||||  |||
seq2  ACTTATCCTCAGCCTGCGCTCCCGGCTTTATCTTCTTTCTTCTTAGAACA  1096

seq1  TTGCT-CGCAGTTGCACAGAACAATGACTACAGTGTCCA  1137
      ||||| ||||||||||||||||| ||||||||| |||||
seq2  TTGCTCCGCAGTTGCACAGAACATTGACTACAGGGTCCA  1135

seq1: chr19_10430939_10431928
seq2: B6Ng01-039F06.g_68_1061 (reverse)

seq1  TAAACATGCATGCAGGTAAGATACCCATGTACATAAAATACG-GAAGTTT  49
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TAAACATGCATTCAGGTAAGATACCCATGTACATAAAATACGAGAAGTTT  50

seq1  TTAAAGAAAAAAATAAAGAATC-TTTGTGTGTGTGTGCAGGTGTGTATCC  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAAAGAAAAAAATAAAGAATCTTTTGTGTGTGTGTGCAGGTGTGTATCC  100

seq1  ACGTACATATGATTAGAAGGCAGAGG-AAGACAGCAGTTGCCTCTGACTA  147
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  ACGTACATATGATTAGAAGGCAGAGGAAAAACAGCAGTTGCCTCTGACTA  150

seq1  CACCTTGGGTATCTCACAGGATTATC-AATGTCTGCCTCCCCAAGAGCAC  196
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACCTTGGGTATCTCACAGGATTATCAAATGTCTGCCTCCCCAAGAGCAC  200

seq1  TCTACCACACCCAGCTTTTTATGTAAGTTCTGAGGATTCGAACACGGATC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACACCCAGCTTTTTATGTAAGTTCTGAGGATTCGAACACGGATC  250

seq1  TCTATGCTTGTAAAGCAAGAACTCTTTTGTACTGAGCCATCTGGGAGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTTGTAAAGCAAGAACTCTTTTGTACTGAGCCATCTGGGAGATG  300

seq1  GATTTTAATTTACAAAAATCTTGTGGGATTTGCTCAGTCAGCTGGCTAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAATTTACAAAAATCTTGTGGGATTTGCTCAGTCAGCTGGCTAGT  350

seq1  CAAGCCACCCGTAACAAGAGTCCTTGGGGACCAGGTGGGCTGGGGAGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACCCGTAACAAGAGTCCTTGGGGACCAGGTGGGCTGGGGAGCAT  400

seq1  TTCTACTCCCAGAGGTGCAGGCCTGACTGCTGAGCCCAGAAAAGCTGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCCCAGAGGTGCAGGCCTGACTGCTGAGCCCAGAAAAGCTGACA  450

seq1  GCGCACAGTGCTCAGTGCTCAGCACTACTGCCACTCAGCATAGACGGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGTGCTCAGTGCTCAGCACTACTGCCACTCAGCATAGACGGGGA  500

seq1  TTCCCCTGGGAGACGTCACAGCAGCCGGGGGCGACTGACGTCTCCTTGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGGGAGACGTCACAGCAGCCGGGGGCGACTGACGTCTCCTTGAC  550

seq1  ACTGCTAATCCAAGGGCCCAAGCTGCCTTTGCATCAGCCGGTGACTCGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATCCAAGGGCCCAAGCTGCCTTTGCATCAGCCGGTGACTCGCT  600

seq1  GTGAGGGGTGGGGGTGGAGGAGGATCCTGGAGTTGTGGGGGTAGTGGGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGTGGGGGTGGAGGAGGATCCTGGAGTTGTGGGGGTAGTGGGGG  650

seq1  AGGGGACAGCAGCTGATGTTGAGTCAGGGTAGAATAGGACAAGTAAGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGCAGCTGATGTTGAGTCAGGGTAGAATAGGACAAGTAAGGAG  700

seq1  AGCAAGCTGGGGGTCTGCAGGGCATTTCCCAGGTCCCTTGAGGCTGGGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTGGGGGTCTGCAGGGCATTTCCCAGGTCCCTTGAGGCTGGGGA  750

seq1  ATTGATGGCCAGCCTAGCTGAGCCCAGGAGGCCTGGAAGAGGGGCGGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGCCAGCCTAGCTGAGCCCAGGAGGCCTGGAAGAGGGGCGGAAG  800

seq1  TAACAGCAGTAAAGGTCAGCAGTCCTTGGGGCCAGGAACATCCAAATGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAGTAAAGGTCAGCAGTCCTTGGGGCCAGGAACATCCAAATGCA  850

seq1  AATGTGGAATTTACCCTCCTGCTATGCCCGCTGGCCAGCCAGCTGCCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAATTTACCCTCCTGCTATGCCCGCTGGCCAGCCAGCTGCCTGC  900

seq1  GGCTTGCATGTCTGTATGCCAATCAGCAGCCTGGGCCTGGAAGGCATAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCATGTCTGTATGCCAATCAGCAGCCTGGGCCTGGAAGGCATAGC  950

seq1  GAAAGTCCTGGACCCTCCCAGGAGCTAGGAGGTTCTAGGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTGGACCCTCCCAGGAGCTAGGAGGTTCTAGGAATTC  994