BAC Information

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BAC

Clone NameB6Ng01-039O08
Chromosome19 (Build37)14 (Build37)
Map Location 37,465,437 - 37,465,753100,745,402 - 100,746,261
singlet/doubletsingletsinglet
Overlap geneKif11
Upstream genePcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, EG667490
Downstream geneLOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O08.bB6Ng01-039O08.g
ACCDH867030DH867031
length984860
definitionDH867030|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O08, 5' end.DH867031|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,465,437 - 37,465,753)(100,745,402 - 100,746,261)
sequence
gaattcaggacctctgcaagggaggccagtgcttttaactagtgtgcatt
tcactaggcctctcgtgtttacgttcttgagatctttatgcattcaatat
attaatcctccgttggataaatactcctcccgtcctctaagctgtctctt
tactctcttctgttgtgacttttttttagtcttatgctgtcctatttatc
agtcttcactattatttcctgagctattaagaccctattctgagaaacct
tgaagtgttttcatgtgttttcctctaacagttttaaagttccaggtctt
ctattaaggcctgatccacttagagttgaggtgtgtgaagagtgggagat
gcgctctagcctcttgcacatggttgtaatggttccgagtgtccgttcac
aacgagtcttttctcccatgtatgcttctggttcttttgtcaagaatcag
atggctgcggttggctgggttttccctggataatgtgttttcctagtgta
ctcatatggtgttttgttactatggctttatcgtagagtttgaagtcagg
aagtctgataactccattatggttacatttgctgagagcagctttggcta
tttttgtgtttctgtattgaatttaggtatttgtttttctacttcagtga
aaatcagaaattctgaaagagatatattgatcaatttagttatatagaca
tttctgatatattaatcctcccaactcatcaatgtggggactttccattt
tttactgtttctcatatttttaaagttcattttgttattctttccatggc
actggcttttaatatatttggctaggattgagtgtatactgtcttgggat
ttggggtccttcctttttttttctttgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctggcctcgaactcaga
aatctgcctgtctctgcctcccaagtgctggata
gaattcttctctagatgagcagttctcaggcccaggccttatctctgcat
tccttcatctgaaaaccaaccttctttgccttcatggtttctaatacgtg
tacatctcagtaagggacagggggcaggtaagagaatttgagcttcatac
attttcagtggaacttgttacaattgccgcagattcaaatgagactacag
aaataagagaagttgtttcctcgggcaagacgcaggagtggaaagacaag
tgttagcgcaacctttgaagaaaatagttcttaagagtatttgttatgtt
ctttttctagaagcctttgtaactgccttatgattaccttctaaaggatc
cattaacagcgactatgtataaacccctctgtactctaaaagacttcctt
aatcaccactggtcactgtaacgacttggcccatcttggtgattattaga
acaccccgagtgacctacagagaacttaaaatgtcatagtcattatctga
ccagtgttagcagcattctcattgtgagttaaaagtcccaagatgatgtc
ttcaccctcacctcctttccctgctattctgtgcaactgcccaacacctt
tatcacactgagcctgtagatgcagggaaaaacctgctctagaaggtaac
tgttagcatttcttctagactttgtcacacagttgcctggaaatagccag
gaatgcctgactcactataaagggggctttttgctgccctcctcattctt
ttactttcttgctctcttccttcttacccctttgtcccttctctccatat
tccccttccctctctctccatgaattcatggctcggttctcctcctcctc
ctccacctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37465437_37465753
seq2: B6Ng01-039O08.b_809_1028

seq1  TCATATTTTTAAAGTTCATTTACTGGCTTCCTTCTCTACTATAAAAATTG  50
      |||||||||||||||||||||  ||   |  |||| | |       || |
seq2  TCATATTTTTAAAGTTCATTT--TG---TTATTCTTTCC-------ATGG  38

seq1  AACAATCTGGTACAATAAAAAGCCAGTTATGACTTCCAAAGTAGTTTTTT  100
       ||   ||  ||  |||    || ||   ||           ||| | | 
seq2  CACTGGCTTTTAATATATTTGGCTAGGATTG-----------AGTGTATA  77

seq1  CTTTCTTTTCTTTTTTTCTTTTGCTTCTTCTTTCTTCTTCCTAATTTTTT  150
      || ||       ||    ||| |  ||         ||||||  ||||||
seq2  CTGTC-------TTGGGATTTGGGGTC---------CTTCCTTTTTTTTT  111

seq1  CTTTCTCCTTCTCCTCCTTCTCCTCCTCCTCTTCTTCCTCCTCTTTCTTT  200
      ||||                                              
seq2  CTTT----------------------------------------------  115

seq1  TTTAAATTTTTCGAGACAGGGTTTCTCTGTGTTCCTCTGGCTGTCCTGGA  250
                  ||||||||||||||||||||  | ||||||||||||||
seq2  ------------GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA  153

seq1  ACTCACTCTGTAGACCAGGCTGGCTTCGAACACAGAAATTCGCCTGTCTC  300
      |||||||||||||||||||||||| |||||| |||||||  |||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTC  203

seq1  TGCCTTCCAAGTGCTGG  317
      ||||| |||||||||||
seq2  TGCCTCCCAAGTGCTGG  220

seq1: chr14_100745402_100746261
seq2: B6Ng01-039O08.g_69_928 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGAACCGAGCCATGAATTCATGGAGAGAGA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGAGGAGGAGGAGGAGAACCGAGCCATGAATTCATGGAGAGAGA  50

seq1  GGGAAGGGGAATATGGAGAGAAGGGACAAAGGGGTAAGAAGGAAGAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGGAATATGGAGAGAAGGGACAAAGGGGTAAGAAGGAAGAGAGC  100

seq1  AAGAAAGTAAAAGAATGAGGAGGGCAGCAAAAAGCCCCCTTTATAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAAAGAATGAGGAGGGCAGCAAAAAGCCCCCTTTATAGTGAG  150

seq1  TCAGGCATTCCTGGCTATTTCCAGGCAACTGTGTGACAAAGTCTAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATTCCTGGCTATTTCCAGGCAACTGTGTGACAAAGTCTAGAAGA  200

seq1  AATGCTAACAGTTACCTTCTAGAGCAGGTTTTTCCCTGCATCTACAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAACAGTTACCTTCTAGAGCAGGTTTTTCCCTGCATCTACAGGCT  250

seq1  CAGTGTGATAAAGGTGTTGGGCAGTTGCACAGAATAGCAGGGAAAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGATAAAGGTGTTGGGCAGTTGCACAGAATAGCAGGGAAAGGAGG  300

seq1  TGAGGGTGAAGACATCATCTTGGGACTTTTAACTCACAATGAGAATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGAAGACATCATCTTGGGACTTTTAACTCACAATGAGAATGCTG  350

seq1  CTAACACTGGTCAGATAATGACTATGACATTTTAAGTTCTCTGTAGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTGGTCAGATAATGACTATGACATTTTAAGTTCTCTGTAGGTCA  400

seq1  CTCGGGGTGTTCTAATAATCACCAAGATGGGCCAAGTCGTTACAGTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGTGTTCTAATAATCACCAAGATGGGCCAAGTCGTTACAGTGACC  450

seq1  AGTGGTGATTAAGGAAGTCTTTTAGAGTACAGAGGGGTTTATACATAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGATTAAGGAAGTCTTTTAGAGTACAGAGGGGTTTATACATAGTC  500

seq1  GCTGTTAATGGATCCTTTAGAAGGTAATCATAAGGCAGTTACAAAGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAATGGATCCTTTAGAAGGTAATCATAAGGCAGTTACAAAGGCTT  550

seq1  CTAGAAAAAGAACATAACAAATACTCTTAAGAACTATTTTCTTCAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAGAACATAACAAATACTCTTAAGAACTATTTTCTTCAAAGGT  600

seq1  TGCGCTAACACTTGTCTTTCCACTCCTGCGTCTTGCCCGAGGAAACAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTAACACTTGTCTTTCCACTCCTGCGTCTTGCCCGAGGAAACAACT  650

seq1  TCTCTTATTTCTGTAGTCTCATTTGAATCTGCGGCAATTGTAACAAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTTCTGTAGTCTCATTTGAATCTGCGGCAATTGTAACAAGTTC  700

seq1  CACTGAAAATGTATGAAGCTCAAATTCTCTTACCTGCCCCCTGTCCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAATGTATGAAGCTCAAATTCTCTTACCTGCCCCCTGTCCCTTA  750

seq1  CTGAGATGTACACGTATTAGAAACCATGAAGGCAAAGAAGGTTGGTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGTACACGTATTAGAAACCATGAAGGCAAAGAAGGTTGGTTTTC  800

seq1  AGATGAAGGAATGCAGAGATAAGGCCTGGGCCTGAGAACTGCTCATCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGAATGCAGAGATAAGGCCTGGGCCTGAGAACTGCTCATCTAG  850

seq1  AGAAGAATTC  860
      ||||||||||
seq2  AGAAGAATTC  860