BAC Information

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BAC

Clone NameB6Ng01-040B07
Chromosome19 (Build37)
Map Location 15,941,086 - 16,097,856
singlet/doubletdoublet
Overlap genePsat1, LOC100041424, Cep78, LOC100042048
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040B07.bB6Ng01-040B07.g
ACCDH867158DH867159
length690902
definitionDH867158|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B07, 5' end.DH867159|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,941,086 - 15,941,772)(16,097,323 - 16,097,856)
sequence
gaattcaccccaggattcttttaaagagcatttctccccctgacattgag
ttaatgatttcatttgcactcagctttccaatatcccatctcagtggttc
ccaacttatggaccacagagttatggcagaggtccccgaagtcatataag
cactgtctagagaacagcgaatgacttgctccgggtatattgccactact
ttgtcctaatatgtggaggtaccgtaagacataaaatgcaaattcattcc
aaagtaacggtagcctgagttgccccaggcatcagcctgtggcaacacac
agagtcactttaacaataaccgaaatgtcactgccttgcatctcccctgc
tgttcacccagggcttctgcctacagcaaactgcccactctaggatgcct
agtgattttgcatatggtcctagaaacaaatccatcctccccagagagcc
actgggtggcgctacatctgcattgacctggcatcaccataggttggttg
cttaggagtagggcaaagatgcaggattgttacatggtacagcggggagc
agacacctcattattctgagctagtattccccaaacactaatgctttact
gaggattgttttctaaatagcttttccagtttttacttaatggcccttaa
actttaagcagaaaaagtagtattttatacatttgatcat
gaattctttctcaacaagtttgttatagaggtataggaaggttactgctt
tggttatattaattttataatcctcaactgccttaaagttgcttctcaga
tacaaattttcttttggagaccctatgtatagaaacttacctgcaagtaa
aaatgttttaacttcctacttgcctattcatatcccttttatcttctcct
accttgctgttccagataagatttcagactttacattgaataagaataag
gaaagtagacacctttgtctgttcttcgctttagtggagacactttgaga
ttctccccataaagtatgaagttggctataggtttgccaaatatagcttt
tatttatgatacgttcttctttttcttagtgtcttcagaatttttatcat
gacagatgctggtctttatcacatgtggagatgatcatatgatttctgtt
cttgagcccatttatatgctgtattacatttatgtttcatatgttggaac
agctctgcatctctagagtacgtccccaacacatgcatgagacatgggaa
tacacactcgtgtgtgcatggaccaatgcaatataaataaatggtgtcct
ttattatgaacatttgctcttcctgaaagaatgttgcacccttcttggat
cttacgtctgctctaagaagtcagtgagctcagataaaggtgagacagaa
gtcatcgctataggtgtgagtctgaatgttcatggtaatgacaatgtttt
gagcagctcacttgtatttcaagagagcatctcctccattttgggatagt
attactggcagacatcccttgagggaagcagggtccagtataatcctgca
aaattttgctctttcagtcatcagagcattctgagagttgtgctcttacc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15941086_15941772
seq2: B6Ng01-040B07.b_36_725

seq1  GAATTCACCCCAGGATTCTTTTAAAGAGCA-TGCTCCCCCTGACATTGAG  49
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GAATTCACCCCAGGATTCTTTTAAAGAGCATTTCTCCCCCTGACATTGAG  50

seq1  TTAATGATTTCATTTGCACTCAGCTTTCCAATATCCCATCTCAGTGGTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTTCATTTGCACTCAGCTTTCCAATATCCCATCTCAGTGGTTC  100

seq1  CCAACTTATGGACCACAGAGTTATGGCAGAGGTCCCCGAAGTCATATAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTATGGACCACAGAGTTATGGCAGAGGTCCCCGAAGTCATATAAG  150

seq1  CACTGTCTAGAGAACAGCGAATGACTTGCTCCGGGTATATTGCCACTACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTAGAGAACAGCGAATGACTTGCTCCGGGTATATTGCCACTACT  200

seq1  TTGTCCTAATATGTGGAGGTACCGTAAGACATAAAATGCAAATTCATTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAATATGTGGAGGTACCGTAAGACATAAAATGCAAATTCATTCC  250

seq1  AAAGTAACGGTAGCCTGAGTTGCCCCAGGCATCAGCCTGTGGCAACACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACGGTAGCCTGAGTTGCCCCAGGCATCAGCCTGTGGCAACACAC  300

seq1  AGAGTCACTTTAACAATAACCGAAATGTCACTGCCTTGCATCTCCCCTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTTTAACAATAACCGAAATGTCACTGCCTTGCATCTCCCCTGC  350

seq1  TGTTCACCCAGGGCTTCTGCCTACAGCAAACTGCCCACTCTAGGATGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCCAGGGCTTCTGCCTACAGCAAACTGCCCACTCTAGGATGCCT  400

seq1  AGTGATTTTGCATATGGTCCTAGAAACAAATCCATCCTCCCCAGAGAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTGCATATGGTCCTAGAAACAAATCCATCCTCCCCAGAGAGCC  450

seq1  ACTGGGTGGCGCTACATCTGCATTGACCTGGCATCACCATAGGTTGGTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGGCGCTACATCTGCATTGACCTGGCATCACCATAGGTTGGTTG  500

seq1  CTTAGGAGTAGGGCAAAGATGCAGGATTGTTACATGGCACAGCGGGGAGC  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTAGGAGTAGGGCAAAGATGCAGGATTGTTACATGGTACAGCGGGGAGC  550

seq1  AGACACCTCATTATTCTGAGCTAGTATTCCCCAAACACTAATGCTTTACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTCATTATTCTGAGCTAGTATTCCCCAAACACTAATGCTTTACT  600

seq1  GAGGATTGTTTTCTAAATAGCTTTTCCAGTTTTTACTTAATGGCCCTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTTTTCTAAATAGCTTTTCCAGTTTTTACTTAATGGCCCTTAA  650

seq1  ACTTTAAGCAGAAAAAGTAGTA-TTTATACA-TTGATCAT  687
      |||||||||||||||||||||| |||||||| ||||||||
seq2  ACTTTAAGCAGAAAAAGTAGTATTTTATACATTTGATCAT  690

seq1: chr19_16097323_16097856
seq2: B6Ng01-040B07.g_440_968 (reverse)

seq1  TTGGTATGAGCACCACTCTCAGAATGCTCTGATGACTGTAAAGGGCAAGA  50
      |||||| |||||| |||||||||||||||||||||||| |||| |||| |
seq2  TTGGTAAGAGCACAACTCTCAGAATGCTCTGATGACTG-AAAGAGCAA-A  48

seq1  ATTTTGCAGAATACTACTTGGACCCTGCCTCCCTC-AGGGATGTCTGGCC  99
      ||||||||| ||  ||| |||||||||| |||||| |||||||||| |||
seq2  ATTTTGCAGGATTATAC-TGGACCCTGCTTCCCTCAAGGGATGTCT-GCC  96

seq1  AGTAATACTATCCCAAACTGGAGGAGATGCTCTCTTGAAATACAAGTTGA  149
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  AGTAATACTATCCCAAAATGGAGGAGATGCTCTCTTGAAATACAAG-TGA  145

seq1  GCTGCTCAAAACATTGTCATTTACCATGAACATTCAGACTCACACCTATA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGCTCAAAACATTGTCA-TTACCATGAACATTCAGACTCACACCTATA  194

seq1  GCGATGACTTCTGTCTCACCTTTATCTGAGCTCACTGACTTCTTAGAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGACTTCTGTCTCACCTTTATCTGAGCTCACTGACTTCTTAGAGCA  244

seq1  GACGTAAGATCCAAGAAGGGTGCAACATTCTTTCAGGAAGAGCAAATGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAAGATCCAAGAAGGGTGCAACATTCTTTCAGGAAGAGCAAATGTT  294

seq1  CATAATAAAGGACACCATTTATTTATATTGCATTGGTCCATGCACACACG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAAAGGACACCATTTATTTATATTGCATTGGTCCATGCACACACG  344

seq1  AGTGTGTATTCCCATGTCTCATGCATGTGTTGGGGACGTACTCTAGAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATTCCCATGTCTCATGCATGTGTTGGGGACGTACTCTAGAGAT  394

seq1  GCAGAGCTGTTCCAACATATGAAACATAAATGTAATACAGCATATAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGTTCCAACATATGAAACATAAATGTAATACAGCATATAAATG  444

seq1  GGCTCAAGAACAGAAATCATATGATCATCTCCACATGTGATAAAGACCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGAACAGAAATCATATGATCATCTCCACATGTGATAAAGACCAG  494

seq1  CATCTGTCATGATAAAAATTCTGAAGACACTAAGA  534
      |||||||||||||||||||||||||||||||||||
seq2  CATCTGTCATGATAAAAATTCTGAAGACACTAAGA  529