BAC Information

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BAC

Clone NameB6Ng01-040E12
Chromosome19 (Build37)
Map Location 17,584,719 - 17,683,607
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E12.bB6Ng01-040E12.g
ACCDH867299DH867300
length1,057143
definitionDH867299|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E12, 5' end.DH867300|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,584,719 - 17,585,782)(17,683,465 - 17,683,607)
sequence
gaattcacctgtacagtgagaggacatggaaaaaacagctcagacccact
gggtgaaggcatgatcactcctataaagtcatgctggtgtgtagtttatt
tttaagtgactcacagaacaattatgaagccccaaaccatcttgaagaag
gatgccatataccttaaatcttatattaatttatcagattgtagcactca
agtgggtaagatacaaaaggtttgggctatattttgtataactagtcttt
tgtttgcttgttttcttgtttgtttgcttgcttgtttgcttgctttactt
tgctttgtgagacagggtcttgctacgtagctctggctgacctggcatta
agttaaatgctttcatttcctgaatactgagactgcagccatgagctacc
atgaaccatgattggctacttaactaattttaaagtcaatctagtagatt
agatttattaaataaatcagttccatgtgtgagaaaataaaattagacat
gtcaatggacaaacttcatatctgacctactaaacatatttaaaatacat
ataattactatttctgtaaatggggaggagaaatacaaggagtgcttaat
ttaaaatatcttaaagctatcttcagctatgggccagccatcattcttat
gtagaggagtgtttacatacatggaggaccaaacacagtcaatgatgtct
aatttatcatcttccaataaaacaaaggaattgaacactaacaaccacat
acaatttacagaacatccaaacatttcaagcaggtttaggcagactgagt
ccccttgcttcttatggcaatcttccttggtgttatgccatcccctttat
ggagaaattaggctcattttgcccagggtctcatacctagtaattaagga
ggaaactgttgaccagaccttgagatttggaccccagtttttctctgtgt
ctggagacatgttcggaaggaatgtttgtgaagttgggatgagctcactt
gcttactgagctatcagagactttctaagtggtcatacacaccatgaaat
ttgaagt
actggttctatgaaatgtcctacaaaatgacacggacatggcaaatgggc
agattccctggcagtgactgtttttcatttctctagtaagtgattttgta
ctcttgaccttaagacctctgacattcgggggggggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17584719_17585782
seq2: B6Ng01-040E12.b_46_1102

seq1  GAATTCACCTGTACAGTGAGAGGACATGGAAAAAACAGCTCAGACCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTACAGTGAGAGGACATGGAAAAAACAGCTCAGACCCACT  50

seq1  GGGTGAAGGCATGATCACTCCTATAAAGTCATGCTGGTGTGTAGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGGCATGATCACTCCTATAAAGTCATGCTGGTGTGTAGTTTATT  100

seq1  TTTAAGTGACTCACAGAACAATTATGAAGCCCCAAACCATCTTGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGACTCACAGAACAATTATGAAGCCCCAAACCATCTTGAAGAAG  150

seq1  GATGCCATATACCTTAAATCTTATATTAATTTATCAGATTGTAGCACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATATACCTTAAATCTTATATTAATTTATCAGATTGTAGCACTCA  200

seq1  AGTGGGTAAGATACAAAAGGTTTGGGCTATATTTTGTATAACTAGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGATACAAAAGGTTTGGGCTATATTTTGTATAACTAGTCTTT  250

seq1  TGTTTGCTTGTTTTCTTGTTTGTTTGCTTGCTTGTTTGCTTGCTTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGTTTTCTTGTTTGTTTGCTTGCTTGTTTGCTTGCTTTACTT  300

seq1  TGCTTTGTGAGACAGGGTCTTGCTACGTAGCTCTGGCTGACCTGGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGAGACAGGGTCTTGCTACGTAGCTCTGGCTGACCTGGCATTA  350

seq1  AGTTAAATGCTTTCATTTCCTGAATACTGAGACTGCAGCCATGAGCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGCTTTCATTTCCTGAATACTGAGACTGCAGCCATGAGCTACC  400

seq1  ATGAACCATGATTGGCTACTTAACTAATTTTAAAGTCAATCTAGTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCATGATTGGCTACTTAACTAATTTTAAAGTCAATCTAGTAGATT  450

seq1  AGATTTATTAAATAAATCAGTTCCATGTGTGAGAAAATAAAATTAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTAAATAAATCAGTTCCATGTGTGAGAAAATAAAATTAGACAT  500

seq1  GTCAATGGACAAACTTCATATCTGACCTACTAAACATATTTAAAATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGACAAACTTCATATCTGACCTACTAAACATATTTAAAATACAT  550

seq1  ATAATTACTATTTCTGTAAATGGGGAGGAGAAATACAAGGAGTGCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACTATTTCTGTAAATGGGGAGGAGAAATACAAGGAGTGCTTAAT  600

seq1  TTAAAATATCTTAAAGCTATCTTCAGCTATGGGCCAGCCATCATTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATCTTAAAGCTATCTTCAGCTATGGGCCAGCCATCATTCTTAT  650

seq1  GTAGAGGAGTGTTTACATACATGGAGGACCAAACACAGTCAATGATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAGTGTTTACATACATGGAGGACCAAACACAGTCAATGATGTCT  700

seq1  AATTTATCATCTTCCAATAAAACAAAGGAATTGAACACTAACAACCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCATCTTCCAATAAAACAAAGGAATTGAACACTAACAACCACAT  750

seq1  ACAATTTACAGAACATCCAAACATTTCAAGCAGGTTTAGGCAGACTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTACAGAACATCCAAACATTTCAAGCAGGTTTAGGCAGACTGAGT  800

seq1  CCCCTTGCTTCTTATGGCAATCTTCCTTGGTGTTATGCCATCCCCTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCTTCTTATGGCAATCTTCCTTGGTGTTATGCCATCCCCTTTAT  850

seq1  GGAGAAATTAGGCTCATTTTGCCCAGGGTCTCATACCTAGTAATTAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTAGGCTCATTTTGCCCAGGGTCTCATACCTAGTAATTAAGGA  900

seq1  GGAAACTGTTGACCAAGACCTTGAGATTTGGACCCCAGTTTTTCTCTGTT  950
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GGAAACTGTTGACC-AGACCTTGAGATTTGGACCCCAGTTTTTCTCTG-T  948

seq1  GTCTGGAGACATGTTGCGGAAGGAAATGTTGTGAAGCTGGGAATGAGCTC  1000
      ||||||||||||||| |||||||||   |||||||| |||| ||||||| 
seq2  GTCTGGAGACATGTT-CGGAAGGAATGTTTGTGAAGTTGGG-ATGAGCT-  995

seq1  CACTTGCTTACTGAGCTATTCAGAGACATTCTAAGTGTTCATACAACACC  1050
      |||||||||||||||||| |||||||| ||||||||| |||||| |||||
seq2  CACTTGCTTACTGAGCTA-TCAGAGACTTTCTAAGTGGTCATAC-ACACC  1043

seq1  ATGATATTTGAAAT  1064
      |||| ||||||| |
seq2  ATGAAATTTGAAGT  1057

seq1: chr19_17683465_17683607
seq2: B6Ng01-040E12.g_73_215 (reverse)

seq1  ACCCTCCCCCCCCCCCGAATGTCAGAGGTCTTAAGGTCAAGAGTACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCCCCCCCCCGAATGTCAGAGGTCTTAAGGTCAAGAGTACAAAA  50

seq1  TCACTTACTAGAGAAATGAAAAACAGTCACTGCCAGGGAATCTGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACTAGAGAAATGAAAAACAGTCACTGCCAGGGAATCTGCCCATT  100

seq1  TGCCATGTCCGTGTCATTTTGTAGGACATTTCATAGAACCAGT  143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTCCGTGTCATTTTGTAGGACATTTCATAGAACCAGT  143