BAC Information

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BAC

Clone NameB6Ng01-041E04
Chromosome19 (Build37)
Map Location 56,664,000 - 56,790,919
singlet/doubletdoublet
Overlap geneNhlrc2
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
Downstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E04.bB6Ng01-041E04.g
ACCDH867971DH867972
length9251,018
definitionDH867971|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E04, 5' end.DH867972|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,664,000 - 56,664,928)(56,789,899 - 56,790,919)
sequence
gaattcactctgtactctagactagcgtcaagctcagatccacctgcctc
tacctcctgagtgctgaaattaaaagtgtgcaccatcaccgcccagccca
ctacactcatctttatttgtagaaagggacagctgtctagcaagttcaag
acctccggtgtccaggcacaggtgtggaacgcagctgtgtagtggtttat
gacagtcacgcatctgaaacagcagttctcaatctgtgggctgtgatccc
tttgagactgaatgacccttcataggggtcacctaagaccatcagaaaac
acagatattttcattatgatttaccttagtaataattacagttataaaat
aacaacaaaaataagtatatggttgggagtcaccacaacgtgaagaactg
tattcaagggtcgcagcattagggaggttgaggaccactgacataaaatg
ttcgttggttcctttcactaggcactgtgttggacactagggatgcagtt
agatgacctctgtgttagaagtaaaaggaagacatgcccatcctcagaag
aatcagatcggcaaacagtgacagtagagagtgcttgtgtcagcagcatc
tgcgctccttcatgccgagatccttagccaagggatttgaagtgtcatgg
aggacttctgtagagaggtcttccaagctgagctgatgctgctggtgtca
gtaacatcaggtcttgccacaccttgagtccttttaagagatctggacat
tccaaatgttgttatagaaagtttaatctaggagtgaactgatttgatgt
gttcttggaagaacccttccagcacttagagtggagcagaccattcagga
cactctagctgtcatctaggcagaggcagtagtgacgtgagcagttgggt
tccagtggtgcatgaggtgtgagta
gaattccaaagcccatggctgtgagtttccaagggacaggaatgctttct
tctaaacactcggcctcccatttgtcctggccatgtagaaacggcttact
aaatttctgtgtactagtggaaccacttaaaaggttatgtctagaagatt
ctctacaataaaagaggacattgtgttttcccgtcagccgtggaaggcgg
gcatcagggcaatccaactgaatggacttgccaagaggaacaggcggaag
agatggcctgcttcaatctcggggtgagaaagccaaccactcgggtttct
ttctttccacttactactttgagaatgtcaaacagacgtcttcttgcatc
ttttgtgttgtgtagatacttttgtgtttaaggaactcattatttacgga
ctgtaaaaatgcctgtgcagacctcagtaggtacaggcgtgccacggcct
ttatctctgcaggacggtcagtctgaagactactttgttgttgataacca
ctgtggttaggcttcttgctttgaaaataaatatcaaacctttgacatga
catttattttccataatatttcagctttgcctctccttgaataaaaccta
ctggagacctttatctcacgataagttttgtttcccccatcagagattat
cctataattaaatgttaaggggacaatgaccttcatgtcaggctcctgct
aaatttaaattacttttcataccagtggagaaacaccttcccgccaaccc
caaccctgttccccttagaaaaaactgaactaagaggggaagagatgcat
aagatttcacagatggagaaaggcattttgaagttcttatttcatgagtt
aatctttaattgcccaatctaatatccttggtgggtagaccccagctact
gattaccacttgtgagaagatttaattgcagatatgttggggacttatag
atttttgagtgacagtgtgacaatgaaaaggcttctgtcagtgactttat
ttgtgtttttcatgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56664000_56664928
seq2: B6Ng01-041E04.b_45_969

seq1  GAATTCACTCTGTACTCTAGACTAGCGTCAAGCTCAGATCCACCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTACTCTAGACTAGCGTCAAGCTCAGATCCACCTGCCTC  50

seq1  TACCTCCTGAGTGCTGAAATTAAAAGTGTGCACCATCACCGCCCAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTGAGTGCTGAAATTAAAAGTGTGCACCATCACCGCCCAGCCCA  100

seq1  CTACACTCATCTTTATTTGTAGAAAGGGACAGCTGTCTAGCAAGTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCATCTTTATTTGTAGAAAGGGACAGCTGTCTAGCAAGTTCAAG  150

seq1  ACCTCCGGTGTCCAGGCACAGGTGTGGAACGCAGCTGTGTAGTGGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGGTGTCCAGGCACAGGTGTGGAACGCAGCTGTGTAGTGGTTTAT  200

seq1  GACAGTCACGCATCTGAAACAGCAGTTCTCAATCTGTGGGCTGTGATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCACGCATCTGAAACAGCAGTTCTCAATCTGTGGGCTGTGATCCC  250

seq1  TTTGAGACTGAATGACCCTTCATAGGGGTCACCTAAGACCATCAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACTGAATGACCCTTCATAGGGGTCACCTAAGACCATCAGAAAAC  300

seq1  ACAGATATTTTCATTATGATTTACCTTAGTAATAATTACAGTTATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTTTCATTATGATTTACCTTAGTAATAATTACAGTTATAAAAT  350

seq1  AACAACAAAAATAAGTATATGGTTGGGAGTCACCACAACGTGAAGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAATAAGTATATGGTTGGGAGTCACCACAACGTGAAGAACTG  400

seq1  TATTCAAGGGTCGCAGCATTAGGGAGGTTGAGGACCACTGACATAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGGGTCGCAGCATTAGGGAGGTTGAGGACCACTGACATAAAATG  450

seq1  TTCGTTGGTTCCTTTCACTAGGCACTGTGTTGGACACTAGGGATGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGGTTCCTTTCACTAGGCACTGTGTTGGACACTAGGGATGCAGTT  500

seq1  AGATGACCTCTGTGTTAGAAGTAAAAGGAAGACATGCCCATCCTCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCTCTGTGTTAGAAGTAAAAGGAAGACATGCCCATCCTCAGAAG  550

seq1  AATCAGATCGGCAAACAGTGACAGTAGAGAGTGCTTGTGTCAGCAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATCGGCAAACAGTGACAGTAGAGAGTGCTTGTGTCAGCAGCATC  600

seq1  TGCGCTCCTTCATGCCGAGATCCTTAGCCAAGGGATTTGAAGTGTCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTCCTTCATGCCGAGATCCTTAGCCAAGGGATTTGAAGTGTCATGG  650

seq1  AGGACTTCTGTAGAGAGGTCTTCCAAGCTGAGCTGATGCTGCTGGTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTGTAGAGAGGTCTTCCAAGCTGAGCTGATGCTGCTGGTGTCA  700

seq1  GTAACATCAGGTCTTGCCACACCTTGAGTCCTTTTAAGAGATCTGGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCAGGTCTTGCCACACCTTGAGTCCTTTTAAGAGATCTGGACAT  750

seq1  TCCAAATGTTGTTATAGAAAGTTTTAATCTAGGAGTGAACTGATTTGATG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCAAATGTTGTTATAGAAAG-TTTAATCTAGGAGTGAACTGATTTGATG  799

seq1  TGTTCTTGGAAGAACCCTTCCAGCACTTAGAGTGGAGCAAGACCATTCAG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTCTTGGAAGAACCCTTCCAGCACTTAGAGTGGAGC-AGACCATTCAG  848

seq1  GACACTCTAGCTGTCATCTAGGCAAGAGGCAGTAGTGACGTGAGCAGTTG  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACACTCTAGCTGTCATCTAGGC-AGAGGCAGTAGTGACGTGAGCAGTTG  897

seq1  GGTTACCAGTGGTGCATGAGGTGTGAGTA  929
      |||| ||||||||||||||||||||||||
seq2  GGTT-CCAGTGGTGCATGAGGTGTGAGTA  925

seq1: chr19_56789899_56790919
seq2: B6Ng01-041E04.g_72_1083 (reverse)

seq1  TGAAAAACACAAATAAAGGTCACCTGACAG-AGCCTTTTCATTTGTTCAC  49
      ||||||||||||||||| |||| ||||||| ||||||||||||   ||||
seq2  TGAAAAACACAAATAAA-GTCA-CTGACAGAAGCCTTTTCATT--GTCAC  46

seq1  AACTGGTCACTTCAAAAATCTATAAGTCCCCAAACATATCTTGCAATTAA  99
       ||| ||||| |||||||||||||||||||| |||||||| |||||||||
seq2  -ACT-GTCAC-TCAAAAATCTATAAGTCCCC-AACATATC-TGCAATTAA  91

seq1  ATTCTTCTCACAAGTGGTAATCAGTAGCTGGGGTCTACCCACCAAGGATA  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCTTCTCACAAGTGGTAATCAGTAGCTGGGGTCTACCCACCAAGGATA  140

seq1  TTAGATTGGGCAATTAAAGATTAACTCATGAAATAAGAACTTCAAAATGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGGGCAATTAAAGATTAACTCATGAAATAAGAACTTCAAAATGC  190

seq1  CTTTCTCCATCTGTGAAATCTTATGCATCTCTTCCCCTCTTAGTTCAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATCTGTGAAATCTTATGCATCTCTTCCCCTCTTAGTTCAGTT  240

seq1  TTTTCTAAGGGGAACAGGGTTGGGGTTGGCGGGAAGGTGTTTCTCCACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGGGGAACAGGGTTGGGGTTGGCGGGAAGGTGTTTCTCCACTG  290

seq1  GTATGAAAAGTAATTTAAATTTAGCAGGAGCCTGACATGAAGGTCATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAAGTAATTTAAATTTAGCAGGAGCCTGACATGAAGGTCATTGT  340

seq1  CCCCTTAACATTTAATTATAGGATAATCTCTGATGGGGGAAACAAAACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAACATTTAATTATAGGATAATCTCTGATGGGGGAAACAAAACTT  390

seq1  ATCGTGAGATAAAGGTCTCCAGTAGGTTTTATTCAAGGAGAGGCAAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAGATAAAGGTCTCCAGTAGGTTTTATTCAAGGAGAGGCAAAGCT  440

seq1  GAAATATTATGGAAAATAAATGTCATGTCAAAGGTTTGATATTTATTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTATGGAAAATAAATGTCATGTCAAAGGTTTGATATTTATTTTC  490

seq1  AAAGCAAGAAGCCTAACCACAGTGGTTATCAACAACAAAGTAGTCTTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAAGCCTAACCACAGTGGTTATCAACAACAAAGTAGTCTTCAG  540

seq1  ACTGACCGTCCTGCAGAGATAAAGGCCGTGGCACGCCTGTACCTACTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCGTCCTGCAGAGATAAAGGCCGTGGCACGCCTGTACCTACTGAG  590

seq1  GTCTGCACAGGCATTTTTACAGTCCGTAAATAATGAGTTCCTTAAACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACAGGCATTTTTACAGTCCGTAAATAATGAGTTCCTTAAACACA  640

seq1  AAAGTATCTACACAACACAAAAGATGCAAGAAGACGTCTGTTTGACATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCTACACAACACAAAAGATGCAAGAAGACGTCTGTTTGACATTC  690

seq1  TCAAAGTAGTAAGTGGAAAGAAAGAAACCCGAGTGGTTGGCTTTCTCACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGTAAGTGGAAAGAAAGAAACCCGAGTGGTTGGCTTTCTCACC  740

seq1  CCGAGATTGAAGCAGGCCATCTCTTCCGCCTGTTCCTCTTGGCAAGTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATTGAAGCAGGCCATCTCTTCCGCCTGTTCCTCTTGGCAAGTCCA  790

seq1  TTCAGTTGGATTGCCCTGATGCCCGCCTTCCACGGCTGACGGGAAAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGGATTGCCCTGATGCCCGCCTTCCACGGCTGACGGGAAAACAC  840

seq1  AATGTCCTCTTTTATTGTAGAGAATCTTCTAGACATAACCTTTTAAGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTCTTTTATTGTAGAGAATCTTCTAGACATAACCTTTTAAGTGG  890

seq1  TTCCACTAGTACACAGAAATTTAGTAAGCCGTTTCTACATGGCCAGGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTAGTACACAGAAATTTAGTAAGCCGTTTCTACATGGCCAGGACA  940

seq1  AATGGGAGGCCGAGTGTTTAGAAGAAAGCATTCCTGTCCCTTGGAAACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGCCGAGTGTTTAGAAGAAAGCATTCCTGTCCCTTGGAAACTC  990

seq1  ACAGCCATGGGCTTTGGAATTC  1021
      ||||||||||||||||||||||
seq2  ACAGCCATGGGCTTTGGAATTC  1012