BAC Information

Click to search

BAC

Clone NameB6Ng01-042G22
Chromosome19 (Build37)
Map Location 43,500,377 - 43,657,800
singlet/doubletdoublet
Overlap geneCnnm1, Got1
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneNkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042G22.bB6Ng01-042G22.g
ACCDH868813DH868814
length9261,133
definitionDH868813|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G22, 5' end.DH868814|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,657,281 - 43,657,800)(43,500,377 - 43,501,538)
sequence
gaattctcccagtggtcaaagaggcaacagaatgtggttccctcagtacc
tgtgtccccaacttaggcaagtattgcactactgagttacagccccagac
ccgctgctgtgagacacttccttaccaagttacttaagctggcattgaag
ctaccctgtcatcaggtagccctttcaaatgcccttaactattctgttta
tccctggtgattctcggtcctctgacatccctgaaggccctgctgtgtca
tagcggggactcaggataaaatgagcagtcagtattagcttctgccactg
gtgttaactaatggccacaagctcactggtttgacacagaagaaattcac
tctcttatggtttgcgaagcacagagccttatggggttgaagtctgggtg
ctggtagagctacctccttcaggaagggtgtcggacagagggtagggatc
tgatcagtgttttgcagcatctggtgggtgctggtatttcttggcttgta
cactcttcctctatttttgaagccagcagcataccattgtctgtccctga
gtctgcttcccacagcttctatcaagtgcctattgtcttctattatagtc
cagtcctctctgtctccctttaattagacacttgttattaatttaggctc
atctagtaattgaaatgaacttcccttttgctttcaaaagacaatattca
tcggctccaggagtagagccaatgtgtcatgcctttgagggactacagtg
ttaaattatatgtatcaccgtaatcagattaaggactgcccaccaggtag
ctggtaaataggattgctgaatgtgtccgtgacaggattagcatttcaat
caggaggttgaatgaagatccaccctcgccagtgatctgctgagtttctg
aaagagtagaagggggcgggacaagt
gaattcccgtgtagaatgaagtactctgaaacagacaaacagcacttaca
acgacagctggataaatggcacacaataggtaaagccaccagaaatccgc
aaacacagtaaggaatacgaggccaaaagatcaagagaacagaggtatgt
ttaacagcgttggccatttctgagcacaggctagttgctgagccctttga
gttggagaaacgatcaggagttacctgccaggaatggacgacatggcata
atatggtaagccacaaacacaaattttccccacagagtattttctaaaat
atgaaattaaaacttcacaaaatgaagaagaagttttagaacctattgac
acttaggaaacaagctcttggtggcatcaagagccttaggtaagatcaat
aaaggagaaagccttggagatgatactaatacctactatattcttcttca
caatattttctaccatgaatgccttgaaactaagaacccagacttaccag
gagaagaaaaaaggaactagtagagttttgtcaactgtatgatcagaaag
ttgagtgacctctaacccacagccatttactcctcaagacatctatgggg
aatgtgcacagtgtaaactgccttagctccacatactctagacttttgga
ctggagaatcttttggtccaagaaattcaaaaccacacagcaagacccca
tgtcaacacatttttaagcagtgatatagtattaaatatgatatttatgc
ccaatctaggtcacagactcacagacccccccccccccccagaattctaa
tgttaagaattcaaggtttaggaccaacaagattaggtaaagcattttgc
caacaaaccctggtgacctgagttccacacacatgacccacatggtgaaa
ggaaagaaccgaacccctcaagccgttctctgacctccagggcccagtgt
ggcacctacacagagacatgcacatatgtgaacatgatataattcttttc
ttaagaaagaaaagaagaaagaaagatttcttgaagtgaaagagaaacaa
agcaaagaagcgattcagacaaacgagatggtggaaatggactggtgagt
cagcagcagaactggtatctgtctgtccgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43657281_43657800
seq2: B6Ng01-042G22.b_44_563 (reverse)

seq1  TCAAAAATAGAGGAAGAGTGTACAAGCCAAGAAATACCAGCACCCACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAGAGGAAGAGTGTACAAGCCAAGAAATACCAGCACCCACCAG  50

seq1  ATGCTGCAAAACACTGATCAGATCCCTACCCTCTGTCCGACACCCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAAAACACTGATCAGATCCCTACCCTCTGTCCGACACCCTTCCT  100

seq1  GAAGGAGGTAGCTCTACCAGCACCCAGACTTCAACCCCATAAGGCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGTAGCTCTACCAGCACCCAGACTTCAACCCCATAAGGCTCTGT  150

seq1  GCTTCGCAAACCATAAGAGAGTGAATTTCTTCTGTGTCAAACCAGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGCAAACCATAAGAGAGTGAATTTCTTCTGTGTCAAACCAGTGAGC  200

seq1  TTGTGGCCATTAGTTAACACCAGTGGCAGAAGCTAATACTGACTGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCATTAGTTAACACCAGTGGCAGAAGCTAATACTGACTGCTCAT  250

seq1  TTTATCCTGAGTCCCCGCTATGACACAGCAGGGCCTTCAGGGATGTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGAGTCCCCGCTATGACACAGCAGGGCCTTCAGGGATGTCAGA  300

seq1  GGACCGAGAATCACCAGGGATAAACAGAATAGTTAAGGGCATTTGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGAGAATCACCAGGGATAAACAGAATAGTTAAGGGCATTTGAAAGG  350

seq1  GCTACCTGATGACAGGGTAGCTTCAATGCCAGCTTAAGTAACTTGGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGATGACAGGGTAGCTTCAATGCCAGCTTAAGTAACTTGGTAAG  400

seq1  GAAGTGTCTCACAGCAGCGGGTCTGGGGCTGTAACTCAGTAGTGCAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCTCACAGCAGCGGGTCTGGGGCTGTAACTCAGTAGTGCAATAC  450

seq1  TTGCCTAAGTTGGGGACACAGGTACTGAGGGAACCACATTCTGTTGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAGTTGGGGACACAGGTACTGAGGGAACCACATTCTGTTGCCTC  500

seq1  TTTGACCACTGGGAGAATTC  520
      ||||||||||||||||||||
seq2  TTTGACCACTGGGAGAATTC  520

seq1: chr19_43500377_43501538
seq2: B6Ng01-042G22.g_67_1199

seq1  GAATTCCCGTGTAGAATGAAGTACTCTGAAACAGACAAACAGCACTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTGTAGAATGAAGTACTCTGAAACAGACAAACAGCACTTACA  50

seq1  ACGACAGCTGGATAAATGGCACACAATAGGTAAAGCCACCAGAAATCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGCTGGATAAATGGCACACAATAGGTAAAGCCACCAGAAATCCGC  100

seq1  AAACACAGTAAGGAATACGAGGCCAAAAGATCAAGAGAACAGAGGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTAAGGAATACGAGGCCAAAAGATCAAGAGAACAGAGGTATGT  150

seq1  TTAACAGCGTTGGCCATTTCTGAGCACAGGCTAGTTGCTGAGCCCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCGTTGGCCATTTCTGAGCACAGGCTAGTTGCTGAGCCCTTTGA  200

seq1  GTTGGAGAAACGATCAGGAGTTACCTGCCAGGAATGGACGACATGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAAACGATCAGGAGTTACCTGCCAGGAATGGACGACATGGCATA  250

seq1  ATATGGTAAGCCACAAACACAAATTTTCCCCACAGAGTATTTTCTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAAGCCACAAACACAAATTTTCCCCACAGAGTATTTTCTAAAAT  300

seq1  ATGAAATTAAAACTTCACAAAATGAAGAAGAAGTTTTAGAACCTATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAAAACTTCACAAAATGAAGAAGAAGTTTTAGAACCTATTGAC  350

seq1  ACTTAGGAAACAAGCTCTTGGTGGCATCAAGAGCCTTAGGTAAGATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAAACAAGCTCTTGGTGGCATCAAGAGCCTTAGGTAAGATCAAT  400

seq1  AAAGGAGAAAGCCTTGGAGATGATACTAATACCTACTATATTCTTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAAGCCTTGGAGATGATACTAATACCTACTATATTCTTCTTCA  450

seq1  CAATATTTTCTACCATGAATGCCTTGAAACTAAGAACCCAGACTTACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTCTACCATGAATGCCTTGAAACTAAGAACCCAGACTTACCAG  500

seq1  GAGAAGAAAAAAGGAACTAGTAGAGTTTTGTCAACTGTATGATCAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAAAAAGGAACTAGTAGAGTTTTGTCAACTGTATGATCAGAAAG  550

seq1  TTGAGTGACCTCTAACCCACAGCCATTTACTCCTCAAGACATCTATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGACCTCTAACCCACAGCCATTTACTCCTCAAGACATCTATGGGG  600

seq1  AATGTGCACAGTGTAAACTGCCTTAGCTCCACATACTCTAGACTTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCACAGTGTAAACTGCCTTAGCTCCACATACTCTAGACTTTTGGA  650

seq1  CTGGAGAATCTTTTGGTCCAAGAAATTCAAAACCACACAGCAAGACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATCTTTTGGTCCAAGAAATTCAAAACCACACAGCAAGACCCCA  700

seq1  TGTCAACACATTTTTAAGCAGTGATATAGTATTAAATATGATATTTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACACATTTTTAAGCAGTGATATAGTATTAAATATGATATTTATGC  750

seq1  CCAATCTAGGTCACAGACTCACAGA-CCCCCCCCCCCCCCAGAATTCTAA  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAATCTAGGTCACAGACTCACAGACCCCCCCCCCCCCCCAGAATTCTAA  800

seq1  TGTTAAGAATTCAAGGTTTAGGACCAACAAGATTAGGTAAAGCATTTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAATTCAAGGTTTAGGACCAACAAGATTAGGTAAAGCATTTTGC  850

seq1  CAACAAACCCTGGTGACCTGAGTTCCACACACATGACCCACATGGTGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACCCTGGTGACCTGAGTTCCACACACATGACCCACATGGTGAAA  900

seq1  GGAAAGAACCGAACCCCTCAAGCCGTTCTCTGACCTCCAGGGCCCAGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACCGAACCCCTCAAGCCGTTCTCTGACCTCCAGGGCCCAGTGT  950

seq1  GGCACCTACACAGAGACATGCACATATGTGAACATGATATAATTCTTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTACACAGAGACATGCACATATGTGAACATGATATAATTCTTTTC  1000

seq1  TTAAAGAAAAGAAAAAGAAAGAAAGAAAAGATTTCCTGAAGTGAAAGAGA  1049
      ||||   ||||||||   ||||||| ||||||||| ||||||||||||||
seq2  TTAA--GAAAGAAAA--GAAGAAAG-AAAGATTTCTTGAAGTGAAAGAGA  1045

seq1  AACAAAGCCAAAGGAAGGCGAATTCGAGGAACCAAAAGGGAAGGATGGGT  1099
      ||||||| |||||  | |||| |  ||     |||| | ||      |||
seq2  AACAAAG-CAAAG--AAGCGATTCAGA-----CAAACGAGA-----TGGT  1082

seq1  GGGAAGAGTGGACTGGTGAAGTCAAGCAGGCAAGAACGTGGTAATCTGTC  1149
      || ||   |||||||||| |||| |||||   ||||| |||| |||||||
seq2  GGAAA---TGGACTGGTG-AGTC-AGCAG--CAGAAC-TGGT-ATCTGTC  1123

seq1  TGGGCTCCGCTAG  1162
      ||   ||||||||
seq2  TG---TCCGCTAG  1133