BAC Information

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BAC

Clone NameB6Ng01-043C19
Chromosome19 (Build37)
Map Location 59,203,612 - 59,363,297
singlet/doubletdoublet
Overlap geneVax1, LOC668627, Kcnk18, Slc18a2
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
Downstream genePdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C19.bB6Ng01-043C19.g
ACCDH869318DH869319
length1,0721,110
definitionDH869318|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C19, 5' end.DH869319|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,362,219 - 59,363,297)(59,203,612 - 59,204,718)
sequence
gaattcagagaaggaagggcaggtgcctcctttcctaggagcccagccat
gagaaaccctgaagtctctagtcattatcttgtatagttcagcacacgaa
gtcagtggccagagacgaatgtgtttctaaattacagtaaatggataggt
gaatgtgaaaagcctcagacaaacataagttatacaatccaaattttggt
tctgtttttaaattcactctaggggaaacccaccaaagagtagttcaaaa
aaaatgataaaggtgtcaaaacctgttcaatttcagaaagcaccattgtg
ctgggcttgtggcacacgcctgtaatgccagctgcttctgaggccgaagg
aggaagatcctaacttcaaggcctgtctggtctcttacagagtaaattca
aggtcaacctgggcaacttaatgagaacttgtttcaaaagaaaacatttt
taaaggtaaaaagagggctagaaatgaaatgatagtagagcgctttgcct
ggcacacacaatccccatttatcggaagagggaaaacccaacagaaatca
cttctgatctattccaaaagaacgtaacaaagaagctcttagatctgtcc
ctgaacacaagactaccatgtcccaggagctctccttcagccccagtcca
gactgtttcctttcaactgaacaatatcagcatctgatcttttagtctgg
ggcactgctaccaggacagactgtgagcagcagcagtgagctcttttgtt
gaataaggtaaacaccgtagaaagggcacaagtctcatacagctctcact
tcaaatttagagccaacaatttgaacttgttcaaaaaaaaaaaaaacact
ttattcgttatagcttgtctatgactgtgcttctaatcatgaaaataaat
agttccatttgctcacatgcatgccccaggtgtaagtatgatctttcata
aagaccttaaaagtatttctagaattttatgtctgtaggaccagacagca
actatcactgataaagtgagctagaagtcactggcaccatattgtgtgga
ttcaggacacttccagaccata
gaattcaaatgcaagtcctcacgcttacacagcaaaggcttctcttccct
aggagccacgtcctcagcctacactggaggtttagaagttcctgtcacat
atcactgtgcattcttgcgtgttggcctctccactgggaacacagccccc
ttccccactttccctgcaggattctgctatggtcatcatgaccagagtcc
tgtgctgtcctcttcaggaagcccccttctctggcttgtgagaaggagcc
tccatcactcaccgtgctacttccctgcatgtctcccgtgctgtactcag
tgcagaaacttacccatgactcatggctagcacacactgctaacctaata
tgaagccattggcttcaaagttccataatgcagatgtgtgtgcaggaagt
tagctggtgacctgggcctcctccagccaccaagctctgtctgtggcact
cacaccagcctacaatagatgcctctataaaggagaagctatggttctct
tacttcccataccccctcatcctatgcttagaattttcaacaagtaagat
ggtttgtaagagtaaaatattccttggtctttaaaataaaccaattcatg
caaatgtaggcacagtattttaaaactgtaaaatgtatctccttggggac
aaattaactaatcaaagggggaagagggcattttctaggcccatctggct
atgcccagtgcaggatctgccaatcttctggcatcagtccccagctggtc
tggggcattgagcaaagagtggcctgcagacagcctatacactggaataa
agcaagacaaagcaattaccattttctagggaagagtagactttattcag
ggtaggcgtccccctgtttgctgcctttggagaaaagaatcgtacaagtg
aggatcagatgagggaaacacagactgaagatttcaaagggcaggacttc
atgcaaaaaatgctctctaacctcctccataggaaaggcctggcctgcga
gcagaattctcccagctcctgtaacatggcatgaagaagaattttgcttg
agcaaaaatcaattacttggaaattctttacaacaaattgcattccttga
ctgctaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59362219_59363297
seq2: B6Ng01-043C19.b_45_1116 (reverse)

seq1  TATGGTCCTGGAAGGTTGTCCTGACTCC-CACAATATGGTGCCAGTGACT  49
      |||||| |||||||  |||||||| ||| |||||||||||||||||||||
seq2  TATGGT-CTGGAAG--TGTCCTGAATCCACACAATATGGTGCCAGTGACT  47

seq1  TCTAGCCTCACTTTATTCAGTGATAGTTGCTGTCTTGGTCCTACAGACAT  99
      ||||| ||||||||| |||||||||||||||||| |||||||||||||||
seq2  TCTAG-CTCACTTTA-TCAGTGATAGTTGCTGTC-TGGTCCTACAGACAT  94

seq1  AAAATTCTAGAAATACTTTTAAGGGTCTTTATGAAAGATCATACTTACAC  149
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  AAAATTCTAGAAATACTTTTAA-GGTCTTTATGAAAGATCATACTTACA-  142

seq1  CCTGGGGCATGCATGTGAGCAAATGGAACTATTTATTTTCATGATTAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCATGCATGTGAGCAAATGGAACTATTTATTTTCATGATTAGAA  192

seq1  GCACAGTCATAGACAAGCTATAACGAATAAAGTGTTTTTTTTTTTTTTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCATAGACAAGCTATAACGAATAAAGTGTTTTTTTTTTTTTTGA  242

seq1  ACAAGTTCAAATTGTTGGCTCTAAATTTGAAGTGAGAGCTGTATGAGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCAAATTGTTGGCTCTAAATTTGAAGTGAGAGCTGTATGAGACT  292

seq1  TGTGCCCTTTCTACGGTGTTTACCTTATTCAACAAAAGAGCTCACTGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTTTCTACGGTGTTTACCTTATTCAACAAAAGAGCTCACTGCTG  342

seq1  CTGCTCACAGTCTGTCCTGGTAGCAGTGCCCCAGACTAAAAGATCAGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACAGTCTGTCCTGGTAGCAGTGCCCCAGACTAAAAGATCAGATG  392

seq1  CTGATATTGTTCAGTTGAAAGGAAACAGTCTGGACTGGGGCTGAAGGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTGTTCAGTTGAAAGGAAACAGTCTGGACTGGGGCTGAAGGAGA  442

seq1  GCTCCTGGGACATGGTAGTCTTGTGTTCAGGGACAGATCTAAGAGCTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGACATGGTAGTCTTGTGTTCAGGGACAGATCTAAGAGCTTCT  492

seq1  TTGTTACGTTCTTTTGGAATAGATCAGAAGTGATTTCTGTTGGGTTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACGTTCTTTTGGAATAGATCAGAAGTGATTTCTGTTGGGTTTTCC  542

seq1  CTCTTCCGATAAATGGGGATTGTGTGTGCCAGGCAAAGCGCTCTACTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCGATAAATGGGGATTGTGTGTGCCAGGCAAAGCGCTCTACTATC  592

seq1  ATTTCATTTCTAGCCCTCTTTTTACCTTTAAAAATGTTTTCTTTTGAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTCTAGCCCTCTTTTTACCTTTAAAAATGTTTTCTTTTGAAAC  642

seq1  AAGTTCTCATTAAGTTGCCCAGGTTGACCTTGAATTTACTCTGTAAGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCATTAAGTTGCCCAGGTTGACCTTGAATTTACTCTGTAAGAGA  692

seq1  CCAGACAGGCCTTGAAGTTAGGATCTTCCTCCTTCGGCCTCAGAAGCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGCCTTGAAGTTAGGATCTTCCTCCTTCGGCCTCAGAAGCAGC  742

seq1  TGGCATTACAGGCGTGTGCCACAAGCCCAGCACAATGGTGCTTTCTGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTACAGGCGTGTGCCACAAGCCCAGCACAATGGTGCTTTCTGAAA  792

seq1  TTGAACAGGTTTTGACACCTTTATCATTTTTTTTGAACTACTCTTTGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGGTTTTGACACCTTTATCATTTTTTTTGAACTACTCTTTGGTG  842

seq1  GGTTTCCCCTAGAGTGAATTTAAAAACAGAACCAAAATTTGGATTGTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCCTAGAGTGAATTTAAAAACAGAACCAAAATTTGGATTGTATA  892

seq1  ACTTATGTTTGTCTGAGGCTTTTCACATTCACCTATCCATTTACTGTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTTTGTCTGAGGCTTTTCACATTCACCTATCCATTTACTGTAAT  942

seq1  TTAGAAACACATTCGTCTCTGGCCACTGACTTCGTGTGCTGAACTATACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACATTCGTCTCTGGCCACTGACTTCGTGTGCTGAACTATACA  992

seq1  AGATAATGACTAGAGACTTCAGGGTTTCTCATGGCTGGGCTCCTAGGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGACTAGAGACTTCAGGGTTTCTCATGGCTGGGCTCCTAGGAAA  1042

seq1  GGAGGCACCTGCCCTTCCTTCTCTGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  GGAGGCACCTGCCCTTCCTTCTCTGAATTC  1072

seq1: chr19_59203612_59204718
seq2: B6Ng01-043C19.g_67_1176

seq1  GAATTCAAATGCAAGTCCTCACGCTTACACAGCAAAGGCTTCTCTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCAAGTCCTCACGCTTACACAGCAAAGGCTTCTCTTCCCT  50

seq1  AGGAGCCACGTCCTCAGCCTACACTGGAGGTTTAGAAGTTCCTGTCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCACGTCCTCAGCCTACACTGGAGGTTTAGAAGTTCCTGTCACAT  100

seq1  ATCACTGTGCATTCTTGCGTGTTGGCCTCTCCACTGGGAACACAGCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTGCATTCTTGCGTGTTGGCCTCTCCACTGGGAACACAGCCCCC  150

seq1  TTCCCCACTTTCCCTGCAGGATTCTGCTATGGTCATCATGACCAGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTTTCCCTGCAGGATTCTGCTATGGTCATCATGACCAGAGTCC  200

seq1  TGTGCTGTCCTCTTCAGGAAGCCCCCTTCTCTGGCTTGTGAGAAGGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTCCTCTTCAGGAAGCCCCCTTCTCTGGCTTGTGAGAAGGAGCC  250

seq1  TCCATCACTCACCGTGCTACTTCCCTGCATGTCTCCCGTGCTGTACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACTCACCGTGCTACTTCCCTGCATGTCTCCCGTGCTGTACTCAG  300

seq1  TGCAGAAACTTACCCATGACTCATGGCTAGCACACACTGCTAACCTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACTTACCCATGACTCATGGCTAGCACACACTGCTAACCTAATA  350

seq1  TGAAGCCATTGGCTTCAAAGTTCCATAATGCAGATGTGTGTGCAGGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATTGGCTTCAAAGTTCCATAATGCAGATGTGTGTGCAGGAAGT  400

seq1  TAGCTGGTGACCTGGGCCTCCTCCAGCCACCAAGCTCTGTCTGTGGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGACCTGGGCCTCCTCCAGCCACCAAGCTCTGTCTGTGGCACT  450

seq1  CACACCAGCCTACAATAGATGCCTCTATAAAGGAGAAGCTATGGTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCCTACAATAGATGCCTCTATAAAGGAGAAGCTATGGTTCTCT  500

seq1  TACTTCCCATACCCCCTCATCCTATGCTTAGAATTTTCAACAAGTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCATACCCCCTCATCCTATGCTTAGAATTTTCAACAAGTAAGAT  550

seq1  GGTTTGTAAGAGTAAAATATTCCTTGGTCTTTAAAATAAACCAATTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAAGAGTAAAATATTCCTTGGTCTTTAAAATAAACCAATTCATG  600

seq1  CAAATGTAGGCACAGTATTTTAAAACTGTAAAATGTATCTCCTTGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGGCACAGTATTTTAAAACTGTAAAATGTATCTCCTTGGGGAC  650

seq1  AAATTAACTAATCAAAGGGGGAAGAGGGCATTTTCTAGGCCCATCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTAATCAAAGGGGGAAGAGGGCATTTTCTAGGCCCATCTGGCT  700

seq1  ATGCCCAGTGCAGGATCTGCCAATCTTCTGGCATCAGTCCCCAGCTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGTGCAGGATCTGCCAATCTTCTGGCATCAGTCCCCAGCTGGTC  750

seq1  TGGGGCATTGAGCAAAGAGTGGCCTGCAGACAGCCTATACACTGGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATTGAGCAAAGAGTGGCCTGCAGACAGCCTATACACTGGAATAA  800

seq1  AGCAAGAC-AAGCAATTACCATTTTCTAGGGAAGAGTAGACTTTATTCAG  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACAAAGCAATTACCATTTTCTAGGGAAGAGTAGACTTTATTCAG  850

seq1  GGTAGGCGTCCCCCTG-TTGCTGCCTTTGGAGAAAAGAATCGTACAAGTG  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTAGGCGTCCCCCTGTTTGCTGCCTTTGGAGAAAAGAATCGTACAAGTG  900

seq1  AGGATCAGATGAGGGAAACACAGACTGAAGGATTTCAAAGGGCAGGGACT  948
      ||||||||||||||||||||||||||||| ||||||||||||||||   |
seq2  AGGATCAGATGAGGGAAACACAGACTGAA-GATTTCAAAGGGCAGGACTT  949

seq1  CATGCAAAAAAATGCTCTCTAACCTCCTCCATAGGAAAGGCCTGGCCTGC  998
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGC-AAAAAATGCTCTCTAACCTCCTCCATAGGAAAGGCCTGGCCTGC  998

seq1  GAGCAG-ATTCTTCCAGCTCCTGTAACATGGCATGAAGAAGAATTTTGC-  1046
      |||||| ||||| |||||||||||||||||||||||||||||||||||| 
seq2  GAGCAGAATTCTCCCAGCTCCTGTAACATGGCATGAAGAAGAATTTTGCT  1048

seq1  TGAGCAAAAATTCAATTACTTGGAATGTCTTTACAACAAA-TGCA-TCCT  1094
      |||||||||| ||||||||||||||  ||||||||||||| |||| ||||
seq2  TGAGCAAAAA-TCAATTACTTGGAAATTCTTTACAACAAATTGCATTCCT  1097

seq1  TGACAGCTAACTT  1107
      |||| ||||||||
seq2  TGACTGCTAACTT  1110