BAC Information

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BAC

Clone NameB6Ng01-043D20
Chromosome19 (Build37)
Map Location 50,348,693 - 50,451,861
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D20.bB6Ng01-043D20.g
ACCDH869360DH869361
length1,1351,156
definitionDH869360|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D20, 5' end.DH869361|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,348,693 - 50,349,852)(50,450,693 - 50,451,861)
sequence
gaattccagtcaagagaacagtgttgaccaaagtgggccagtcttcaact
tcaataagctaatcaagacagtagtccaaatccatacttctaggtcatac
catagcctatcaagttgacaaataattgctgcagggacttactctcaaag
gatagaaaattctaaacaagaggatgattcagtaacttcttacatacagt
ggtggccatgataattaccattgtttcaaaattgctagaagtgtatattt
aaatatttttacaacaaacatgcaacttatgggaggcaatggaattactt
ggagttatttaatgatcctacattataaaggcaaataagaaaagtctggg
ttaggagaaatagtttgggaataagagcacctgtcagacagtcatgacga
cctaagttgtaatcctagcatttgtgtaacaagctgtgtgttccataatt
tctgcttctggcttctgcccacagactggtaatgtaaacacatgtgcata
cacacacacacaaaagtaaataaaataaaaaagaataaaattcttaaaga
aaataccatactgtatcatacaaatgcatttaaatactattttcaaagtg
aaagtaaaattcagaaaattcatttttaacacaatggaaaatattattct
tgcacacgtagataatacataacctgtgtgagcagtaggagagagtggtc
agcagcccaagtctgaaaaaatagtaaccatggataggaatatagaagct
acttttgcatttaacacatgagccttcttgttgtataggtgggctttcct
ttcacttgagtgaaccccaaggcccttgcttcaccccaacaagccgggtt
actgtggggttatttcctaagctagtatgcagactctttctgtaagtaga
gctctagaattttagaatataaatcgatcgtaaaaatcaaactcttgctc
taagtctgaaagtcttatctgttctttcctcctcctgccaagactaaaca
aagatctttgatgtccctgctagctctgtttcagatctgacatttcacaa
tgacatgatactctcagtgacacacccttgtttctttggagagtctgctg
ctgaatgctttcctctctgatctcattcaattctc
gaattcatgtggcttgcgtaaagccccatctgagctcaatgctgaataga
taactacaggagctcacgtcattgacctgggcagtgtcctcaaacaacgc
agggataatgagagtgcttgcctcatgacttctcttaaacgtcatatatg
aaattagacatttcttttttttttaaggcatgcatcaccatgaccaacac
attcaatttttaaaaaagactttatctatataggtacactgtagctgact
gcagacacaccagaagagagcatcagatcccattacaggtggttgtgagc
caccatagagttgctggaaattgaactctggacctcttggaagaacaatc
agtgctcttacctgctgagccacctctccagccctaaattagacattttg
agtgttgagctcagagcagtccgggcttaatcaatgtttgttctttattt
ccctttctcaccaccctgttcctcctgcttcataaaattatagggagtaa
cagtagtgattatcccctataatgaagagtgtccaggagaacatactgtg
atactcagaattttcttctaagccgtctagtactttagacatgagcaacc
actggctggtgaatattctaaatgtggctaatgtaactgagggactgaat
tctcaacttcatttcactttaattaacttacatttgcatagttgcatttg
gctggggagcgcagtatcagacagcatggctcagtgtgagtgctgtgccc
tctcggcatcgcttattgactctttacttggccatcaccaataatctcat
ctaaactattttgatctgctgtgcagagccttgtgatgtggagctgaact
actagccttcagcttcgtaatgagatttagttgttttctgcctttaaaat
gattctcatctcctctattgattttagtctagttcacattttgagtaaat
ttaatttacaatcaataaactgtgcgtgaggcaatgaagtttgaagataa
aaagagaaataacgaaagggaaacagctcagtgatagaggagcttgcttt
cagctgacagcttgtaccatggtgtggaggagaagaagttgccttcgact
ccaacctagcactgttctatgatacaactttaataagaaaaggcttggcc
agaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50348693_50349852
seq2: B6Ng01-043D20.b_43_1177

seq1  GAATTCCAGTCAAGAGAACAGTGTTGACCAAAGTGGGCCAGTCTTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCAAGAGAACAGTGTTGACCAAAGTGGGCCAGTCTTCAACT  50

seq1  TCAATAAGCTAATCAAGACAGTAGTCCAAATCCATACTTCTAGGTCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGCTAATCAAGACAGTAGTCCAAATCCATACTTCTAGGTCATAC  100

seq1  CATAGCCTATCAAGTTGACAAATAATTGCTGCAGGGACTTACTCTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTATCAAGTTGACAAATAATTGCTGCAGGGACTTACTCTCAAAG  150

seq1  GATAGAAAATTCTAAACAAGAGGATGATTCAGTAACTTCTTACATACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAATTCTAAACAAGAGGATGATTCAGTAACTTCTTACATACAGT  200

seq1  GGTGGCCATGATAATTACCATTGTTTCAAAATTGCTAGAAGTGTATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCATGATAATTACCATTGTTTCAAAATTGCTAGAAGTGTATATTT  250

seq1  AAATATTTTTACAACAAACATGCAACTTATGGGAGGCAATGGAATTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTACAACAAACATGCAACTTATGGGAGGCAATGGAATTACTT  300

seq1  GGAGTTATTTAATGATCCTACATTATAAAGGCAAATAAGAAAAGTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATTTAATGATCCTACATTATAAAGGCAAATAAGAAAAGTCTGGG  350

seq1  TTAGGAGAAATAGTTTGGGAATAAGAGCACCTGTCAGACAGTCATGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAAATAGTTTGGGAATAAGAGCACCTGTCAGACAGTCATGACGA  400

seq1  CCTAAGTTGTAATCCTAGCATTTGTGTAACAAGCTGTGTGTTCCATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTGTAATCCTAGCATTTGTGTAACAAGCTGTGTGTTCCATAATT  450

seq1  TCTGCTTCTGGCTTCTGCCCACAGACTGGTAATGTAAACACATGTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTGGCTTCTGCCCACAGACTGGTAATGTAAACACATGTGCATA  500

seq1  CACACACACACAAAAGTAAATAAAATAAAAAAGAATAAAATTCTTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAAAGTAAATAAAATAAAAAAGAATAAAATTCTTAAAGA  550

seq1  AAATACCATACTGTATCATACAAATGCATTTAAATACTATTTTCAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATACTGTATCATACAAATGCATTTAAATACTATTTTCAAAGTG  600

seq1  AAAGTAAAATTCAGAAAATTCATTTTTAACACAATGGAAAATATTATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATTCAGAAAATTCATTTTTAACACAATGGAAAATATTATTCT  650

seq1  TGCACACGTAGATAATACATAACCTGTGTGAGCAGTAGGAGAGAGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGTAGATAATACATAACCTGTGTGAGCAGTAGGAGAGAGTGGTC  700

seq1  AGCAGCCCAAGTCTGAAAAAATAGTAACCATGGATAGGAATATAGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCAAGTCTGAAAAAATAGTAACCATGGATAGGAATATAGAAGCT  750

seq1  ACTTTTGCATTTAACACATGAGCCTTCTTGTTGTATAGGTGGGCTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCATTTAACACATGAGCCTTCTTGTTGTATAGGTGGGCTTTCCT  800

seq1  TTCACTTGAGTGAACCCCAAGGCCCTTGCTTCACCCCAACAAGCCGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGAGTGAACCCCAAGGCCCTTGCTTCACCCCAACAAGCCGGGTT  850

seq1  ACTGTGGGGTTATTTCCTAAGCTAGTATGCAGACTCTTTCTGTAAGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGGTTATTTCCTAAGCTAGTATGCAGACTCTTTCTGTAAGTAGA  900

seq1  GCTCTAGAATTTTAGAATATAAATCGATCGTAAAAATCAAACTCTTGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGAATTTTAGAATATAAATCGATCGTAAAAATCAAACTCTTGCTC  950

seq1  TAAGGTCTGAAAGGTCTTTATCTGTTTCTTTCCTCCTCCTGCCAAGACTA  1000
      ||| |||||||| ||| ||||||| |||||||||||||||||||||||||
seq2  TAA-GTCTGAAA-GTC-TTATCTG-TTCTTTCCTCCTCCTGCCAAGACTA  996

seq1  AACAAAGATCTTTGATGTCCCTGGCTAGCTCTTGTTTTCAGAATCTTGAC  1050
      |||||||||||||||||||||| |||||||||   |||||| ||| ||| 
seq2  AACAAAGATCTTTGATGTCCCT-GCTAGCTCT--GTTTCAG-ATC-TGA-  1040

seq1  CATTTCACAATGACATGATTACTCTCAGTGGACAAACACCCTATGTTCTT  1100
      |||||||||||||||||| |||||||||||   | ||||||| ||||  |
seq2  CATTTCACAATGACATGA-TACTCTCAGTG---ACACACCCT-TGTTTCT  1085

seq1  TTGGAGAGTTCTGCTGGCTTGAGTTGCTTTTTCCTCTCCTGATCCTCCAT  1150
      |||||||| |||||||   |||  |||  |||||||| ||||||   |||
seq2  TTGGAGAG-TCTGCTG--CTGA-ATGC--TTTCCTCT-CTGATC--TCAT  1126

seq1  TCAAATTCTC  1160
      || |||||||
seq2  TC-AATTCTC  1135

seq1: chr19_50450693_50451861
seq2: B6Ng01-043D20.g_66_1221 (reverse)

seq1  GGGTGCTGGCCAAGCTTTTTCTTATTAAAGGTTGTACTCATAGAACAGTG  50
      |||| |||||||||| ||||||||||||| |||||| |||||||||||||
seq2  GGGT-CTGGCCAAGCCTTTTCTTATTAAA-GTTGTA-TCATAGAACAGTG  47

seq1  CTAGTGTGGAGGTCTGAGGGCAACTTCTTCTTCCCTCCAACACATGGGTT  100
      ||||  |||| ||| || |||||||||||||  ||||| ||||   ||| 
seq2  CTAGGTTGGA-GTC-GAAGGCAACTTCTTCT--CCTCC-ACACCATGGTA  92

seq1  CCAGCTGTCAGGCTGGACAGCAAGCTCCTCTATCCACTGAGCTGTCTCCC  150
      | |||||||| ||| || ||||||||||||||| ||||||||||| ||||
seq2  CAAGCTGTCA-GCT-GAAAGCAAGCTCCTCTAT-CACTGAGCTGTTTCCC  139

seq1  TGTCCTTATTTCTCTTTTTATCTTCAAACTTCATTGCCTCACGCACAGTT  200
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTATTTCTCTTTTTATCTTCAAACTTCATTGCCTCACGCACAGTT  189

seq1  TATTGATTGTTAAATTAAATTTACTCAAAATGTGAACTAGAACTAAAATC  250
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TATTGATTG-TAAATTAAATTTACTCAAAATGTGAACTAG-ACTAAAATC  237

seq1  AATAGAGGAGATGAGAATCATTTTAAAGGCAGAAAACAACTAAATCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGAGATGAGAATCATTTTAAAGGCAGAAAACAACTAAATCTCAT  287

seq1  TACGAAGCTGAAGGCTAGTAGTTCAGCTCCACATCACAAGGCTCTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGCTGAAGGCTAGTAGTTCAGCTCCACATCACAAGGCTCTGCACA  337

seq1  GCAGATCAAAATAGTTTAGATGAGATTATTGGTGATGGCCAAGTAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAAAATAGTTTAGATGAGATTATTGGTGATGGCCAAGTAAAGAG  387

seq1  TCAATAAGCGATGCCGAGAGGGCACAGCACTCACACTGAGCCATGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGCGATGCCGAGAGGGCACAGCACTCACACTGAGCCATGCTGTC  437

seq1  TGATACTGCGCTCCCCAGCCAAATGCAACTATGCAAATGTAAGTTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGCGCTCCCCAGCCAAATGCAACTATGCAAATGTAAGTTAATTA  487

seq1  AAGTGAAATGAAGTTGAGAATTCAGTCCCTCAGTTACATTAGCCACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATGAAGTTGAGAATTCAGTCCCTCAGTTACATTAGCCACATTT  537

seq1  AGAATATTCACCAGCCAGTGGTTGCTCATGTCTAAAGTACTAGACGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTCACCAGCCAGTGGTTGCTCATGTCTAAAGTACTAGACGGCTT  587

seq1  AGAAGAAAATTCTGAGTATCACAGTATGTTCTCCTGGACACTCTTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAATTCTGAGTATCACAGTATGTTCTCCTGGACACTCTTCATTA  637

seq1  TAGGGGATAATCACTACTGTTACTCCCTATAATTTTATGAAGCAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATAATCACTACTGTTACTCCCTATAATTTTATGAAGCAGGAGGA  687

seq1  ACAGGGTGGTGAGAAAGGGAAATAAAGAACAAACATTGATTAAGCCCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGTGAGAAAGGGAAATAAAGAACAAACATTGATTAAGCCCGGA  737

seq1  CTGCTCTGAGCTCAACACTCAAAATGTCTAATTTAGGGCTGGAGAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGAGCTCAACACTCAAAATGTCTAATTTAGGGCTGGAGAGGTGG  787

seq1  CTCAGCAGGTAAGAGCACTGATTGTTCTTCCAAGAGGTCCAGAGTTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGTAAGAGCACTGATTGTTCTTCCAAGAGGTCCAGAGTTCAAT  837

seq1  TTCCAGCAACTCTATGGTGGCTCACAACCACCTGTAATGGGATCTGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAACTCTATGGTGGCTCACAACCACCTGTAATGGGATCTGATGC  887

seq1  TCTCTTCTGGTGTGTCTGCAGTCAGCTACAGTGTACCTATATAGATAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGTGTGTCTGCAGTCAGCTACAGTGTACCTATATAGATAAAG  937

seq1  TCTTTTTTAAAAATTGAATGTGTTGGTCATGGTGATGCATGCCTTAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAAATTGAATGTGTTGGTCATGGTGATGCATGCCTTAAAAA  987

seq1  AAAAAGAAATGTCTAATTTCATATATGACGTTTAAGAGAAGTCATGAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATGTCTAATTTCATATATGACGTTTAAGAGAAGTCATGAGGC  1037

seq1  AAGCACTCTCATTATCCCTGCGTTGTTTGAGGACACTGCCCAGGTCAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTCATTATCCCTGCGTTGTTTGAGGACACTGCCCAGGTCAATG  1087

seq1  ACGTGAGCTCCTGTAGTTATCTATTCAGCATTGAGCTCAGATGGGGCTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGCTCCTGTAGTTATCTATTCAGCATTGAGCTCAGATGGGGCTTT  1137

seq1  ACGCAAGCCACATGAATTC  1169
      |||||||||||||||||||
seq2  ACGCAAGCCACATGAATTC  1156