BAC Information

Click to search

BAC

Clone NameB6Ng01-044D23
Chromosome13 (Build37)19 (Build37)
Map Location 46,253,255 - 46,253,33241,428,110 - 41,429,218
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
Downstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D23.bB6Ng01-044D23.g
ACCDH870058DH870059
length841,100
definitionDH870058|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D23, 5' end.DH870059|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,253,255 - 46,253,332)(41,428,110 - 41,429,218)
sequence
gaattcaaattccagcaaccacatggtggctcttaactatctataatggg
atctgatgtcctcttctggtgtgtctgaagacag
gaattccacccccaaatgcctgacagtcagaggtcatgaaatccaggatg
atagttattaaagagtctcgcttgctcttttttttatgcaagaactgacc
aactagacaacctgggtaagaaggatcttgtttccaattatctgccaata
tatctgttatgcctggaagtgagaaatcctgtttgttaaacaaaatggat
gctctttcctctttactgtggacaatattaagtagttgatcccttgcacc
cagactgaggtcagagccaaaactcagcccagctcaatgagaaaagatgc
cataagtcattaatgaaatctgacctgggacaagcaggatgccccataca
gtgtgtctaccatacaagatattctagatcatgcttaggggccaggggca
acatacatggctgatacgtgaccagagagaaaaatggcagttcactcaaa
gggtcacaaacctgggtcggcagctgaaaacagctggcagaatccaagac
aaaaacagtcactttctaaataaccaggagagatgagagcccacccaaaa
catttcatattgggggaccacacatcaaggaggattaaaaagaggagaaa
ctggttatggtcacgtggctgggcatacaccatttagctgatagagactc
caatccaaggatgggcgaaagtccttttgtaagagccccagcgtctaaag
aatgtacacactacagcctacactggaggcttcaccgccagtcttttctt
ttctttcatcaagatctgtaggacgatcacaacctcctgtcgtagcctcc
tcgctcgcagggatgcggatgtgtggcttttgtggtcaaaagaagcaaag
gatgtcacagtgagcttcttagagctgaagaccgggctgcttttgaaaac
ataaataaatattccacaaaagccacaaagccagcttgcaacttacttac
atcttgattttctcagagtttcttagatggccagtgccagatctaagcaa
aagcaaagcccgcccttccgccccgtgtgtctctgttggtcattctgccc
tcctcagtcactccccacagctctgaggtctgtggtcagcccacccaggc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46253255_46253332
seq2: B6Ng01-044D23.b_48_124

seq1  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGA  50
      |||| |||||||||||||||||||||  ||| |||| |||||||||||||
seq2  AATT-CCAGCAACCACATGGTGGCTCTTAACTATCTATAATGGGATCTGA  49

seq1  TGCCTTCTTCTGGTGTGTCTGAAGACAG  78
      || | |||||||||||||||||||||||
seq2  TGTCCTCTTCTGGTGTGTCTGAAGACAG  77

seq1: chr19_41428110_41429218
seq2: B6Ng01-044D23.g_65_1164

seq1  GAATTCCACCCCCAAATGCCTGACAGTCAGAGGTCATGAAATCCAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCCAAATGCCTGACAGTCAGAGGTCATGAAATCCAGGATG  50

seq1  ATAGTTATTAAAGAGTCTCGCTTGCTCTTTTTTTTATGCAAGAACTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATTAAAGAGTCTCGCTTGCTCTTTTTTTTATGCAAGAACTGACC  100

seq1  AACTAGACAACCTGGGTAAGAAGGATCTTGTTTCCAATTATCTGCCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACAACCTGGGTAAGAAGGATCTTGTTTCCAATTATCTGCCAATA  150

seq1  TATCTGTTATGCCTGGAAGTGAGAAATCCTGTTTGTTAAACAAAATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTATGCCTGGAAGTGAGAAATCCTGTTTGTTAAACAAAATGGAT  200

seq1  GCTCTTTCCTCTTTACTGTGGACAATATTAAGTAGTTGATCCCTTGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCCTCTTTACTGTGGACAATATTAAGTAGTTGATCCCTTGCACC  250

seq1  CAGACTGAGGTCAGAGCCAAAACTCAGCCCAGCTCAATGAGAAAAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGGTCAGAGCCAAAACTCAGCCCAGCTCAATGAGAAAAGATGC  300

seq1  CATAAGTCATTAATGAAATCTGACCTGGGACAAGCAGGATGCCCCATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTCATTAATGAAATCTGACCTGGGACAAGCAGGATGCCCCATACA  350

seq1  GTGTGTCTACCATACAAGATATTCTAGATCATGCTTAGGGGCCAGGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTACCATACAAGATATTCTAGATCATGCTTAGGGGCCAGGGGCA  400

seq1  ACATACATGGCTGATACGTGACCAGAGAGAAAAATGGCAGTTCACTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGGCTGATACGTGACCAGAGAGAAAAATGGCAGTTCACTCAAA  450

seq1  GGGTCACAAACCTGGGTCGGCAGCTGAAAACAGCTGGCAGAATCCAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAAACCTGGGTCGGCAGCTGAAAACAGCTGGCAGAATCCAAGAC  500

seq1  AAAAACAGTCACTTTCTAAATAACCAGGAGAGATGAGAGCCCACCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTCACTTTCTAAATAACCAGGAGAGATGAGAGCCCACCCAAAA  550

seq1  CATTTCATATTGGGGGACCACACATCAAGGAGGATTAAAAAGAGGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATATTGGGGGACCACACATCAAGGAGGATTAAAAAGAGGAGAAA  600

seq1  CTGGTTATGGTCACGTGGCTGGGCATACACCATTTAGCTGATAGAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATGGTCACGTGGCTGGGCATACACCATTTAGCTGATAGAGACTC  650

seq1  CAATCCAAGGATGGGCGAAAGTCCTTTTGTAAGAGCCCCAGCGTCTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAGGATGGGCGAAAGTCCTTTTGTAAGAGCCCCAGCGTCTAAAG  700

seq1  AATGTACACACTACAGCCTACACTGGAGGCTTCACCGCCAGTCTTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACACTACAGCCTACACTGGAGGCTTCACCGCCAGTCTTTTCTT  750

seq1  TTCTTTCATCAAGATCTGTAGGACGATCACAACCTCCTGTCGTAGCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCAAGATCTGTAGGACGATCACAACCTCCTGTCGTAGCCTCC  800

seq1  TCGCTCGCAGGGATGCGGATGTGTGGCTTTTGTGGTCAAAAGAAGCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCGCAGGGATGCGGATGTGTGGCTTTTGTGGTCAAAAGAAGCAAAG  850

seq1  GATGTCACAGTGAGCTTCTTAGAGCTGAAGACCGGGCTGCTTTTGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATGTCACAGTGAGCTTCTTAGAGCTGAAGACCGGGCTGCTTTTG-AAAA  899

seq1  CATAAATAAATATTTCCACAAAAGCCACAAAAGCCAGCTTGCAACTTACT  950
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  CATAAATAAATA-TTCCACAAAAGCCAC-AAAGCCAGCTTGCAACTTACT  947

seq1  TACATCTTGATTTTTCTCAAGAGTTTCTTAGATGGCCAGTGCCAGATCTA  1000
      |||||||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  TACATCTTGA-TTTTCTC-AGAGTTTCTTAGATGGCCAGTGCCAGATCT-  994

seq1  AAGCAAAAGCAAAGCCCGCCCTCCGCCCCCGTGTGGTCTCTGGTTGGTCA  1050
      |||||||||||||||||||||| |  |||||||| |||||| ||||||||
seq2  AAGCAAAAGCAAAGCCCGCCCTTCCGCCCCGTGT-GTCTCT-GTTGGTCA  1042

seq1  TTCTGCCCTCCTCAGTCACTCCCCACAGCTCTGAGGTCTGTGGTCAGGCC  1100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTGCCCTCCTCAGTCACTCCCCACAGCTCTGAGGTCTGTGGTCA-GCC  1091

seq1  CACCCAGGC  1109
      |||||||||
seq2  CACCCAGGC  1100