BAC Information

Click to search

BAC

Clone NameB6Ng01-044H10
Chromosome19 (Build37)
Map Location 50,283,916 - 50,348,313
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H10.bB6Ng01-044H10.g
ACCDH870208DH870209
length1,238918
definitionDH870208|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H10, 5' end.DH870209|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,283,916 - 50,285,182)(50,347,786 - 50,348,313)
sequence
gaattccaaagagcacacaattacagaaactctctacagttggcaaaatc
gtgcccctggtggacgacgcggcaaatcatagtcagtggctagggcaact
ccatatgctctctgaggttaaaacagaagcatcgtcttgtaatagttctg
tttttcaaggaaaccaaaactccaaacttgtcactgcatggtccaaactc
cttcatctttccctccagtcagcagcctctgaattctccttcccaagtct
tcctacttgccttgcttttgtttgcttgcttaactagcaacactgtgtgc
aattgtaatttcttataaatgaggattagtatcagagctaatgaatgagc
atgtgcatacgtggcaatgtatgcatcagacaattgctgtataggaaaga
tccagggccactgcctatcagatagctggaagttaaccttgtatacttta
atgctgatttcagtagttcttttgagaatctcattatctccctcaaggtg
aatagaatactggctgtattccagtaatatggctgaagacatgattatgg
cctggtttcatggctgaggtaatttatttaatgtgattattctttgaaat
catctagttccaatatgacaagtttggctttgtagagtcctaagtacaca
gaatatatttttttcttttattctccacctacatagttagaaattccaga
caaacataatttgtcaaagagtaatcagagctgtcttcagagtgttacca
agatacaaagtcccaactgtcaaagatattatagtaacttataacttagt
gctgtatttgatcagtatatttaaccagcccgttgccttggaaaagaaaa
gccacgatattaggctgagagaggccaaagcccatccccctttgacttgc
ttgaatctttgtctgtgtaaattacatgggaggggggcattcacacagtt
tgagattatgttctcctacatgccaataaacagagttaaatccaaacaga
gccactacggaaaggatgaaaccaactttcagtaaaccggactttgtcag
taaagggagaggatacagccgagatgagctgaaaagcacaagagaaaaca
aaccactgcagctcaaacgtgaggatgtaccgaggttgtaacaaaacatg
attcctgtagattcacttgctgcattcgaagtgacggatccagccttacc
tttcgactgcccatgagaagtaattgtggcctgctctg
gaattcagagaaagaaacatgttataaactgccaaggaccagcctcagcc
tgggagagaagttctgaaagaaggagtggttgagagcagcaaaacaacgg
actcaaagtcagattgtgagtctaagttgatgacccatgttctgtttgag
atagttttcgagcctgatgtttccctgttctgctttctctggagatctcc
agacagctatcactctatcttctgctggaagacagttctccacgaagttc
tgttgctatccttaaaaattttctggatactccatctcttgcagatagta
agctgtgtcttttattttacatatcaattcagtcatttactctgggttcc
ctcttgattatcctatgagtcagcatcctataagcccagtctcttggttc
ttaggagacagcaaacacacacacttttatttttaacattgcaaaagaat
tcagagatatgcctgcctttatgaagcacagacaataagccagctgggtg
ggacccccaccctgaaattaacatttctaccaagtttaggcctaaaccta
aactttctctgtcccagactgaccttgaactaaggaatgtgtttgtcttt
gtaagcataaacaaaaacataactggatgtgatcaccactctccaaatct
ctttatccagttccttagtaactttgacaagttggctcactgttttttta
gattcatgatgcccatcatataattcatattgcatctttatattttgcat
agttgagtacttgtatatttttgaactcatgttttcagagttctttctca
catccttaagggctggcctgaaggtcccagcatttaccattttgctaata
gattagccacacctttgcctcctggacttatgctttctttgattatccta
gagttgttaacaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50283916_50285182
seq2: B6Ng01-044H10.b_43_1280

seq1  GAATTCCAAAGAGCACACAATTACAGAAACTCTCTACAGTTGGCAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAGCACACAATTACAGAAACTCTCTACAGTTGGCAAAATC  50

seq1  GTGCCCCTGGTGGACGACGCGGCAAATCATAGTCAGTGGCTAGGGCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCTGGTGGACGACGCGGCAAATCATAGTCAGTGGCTAGGGCAACT  100

seq1  CCATATGCTCTCTGAGGTTAAAACAGAAGCATCGTCTTGTAATAGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCTCTCTGAGGTTAAAACAGAAGCATCGTCTTGTAATAGTTCTG  150

seq1  TTTTTCAAGGAAACCAAAACTCCAAACTTGTCACTGCATGGTCCAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGGAAACCAAAACTCCAAACTTGTCACTGCATGGTCCAAACTC  200

seq1  CTTCATCTTTCCCTCCAGTCAGCAGCCTCTGAATTCTCCTTCCCAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTTCCCTCCAGTCAGCAGCCTCTGAATTCTCCTTCCCAAGTCT  250

seq1  TCCTACTTGCCTTGCTTTTGTTTGCTTGCTTAACTAGCAACACTGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTGCCTTGCTTTTGTTTGCTTGCTTAACTAGCAACACTGTGTGC  300

seq1  AATTGTAATTTCTTATAAATGAGGATTAGTATCAGAGCTAATGAATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATTTCTTATAAATGAGGATTAGTATCAGAGCTAATGAATGAGC  350

seq1  ATGTGCATACGTGGCAATGTATGCATCAGACAATTGCTGTATAGGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATACGTGGCAATGTATGCATCAGACAATTGCTGTATAGGAAAGA  400

seq1  TCCAGGGCCACTGCCTATCAGATAGCTGGAAGTTAACCTTGTATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCCACTGCCTATCAGATAGCTGGAAGTTAACCTTGTATACTTTA  450

seq1  ATGCTGATTTCAGTAGTTCTTTTGAGAATCTCATTATCTCCCTCAAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTTCAGTAGTTCTTTTGAGAATCTCATTATCTCCCTCAAGGTG  500

seq1  AATAGAATACTGGCTGTATTCCAGTAATATGGCTGAAGACATGATTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATACTGGCTGTATTCCAGTAATATGGCTGAAGACATGATTATGG  550

seq1  CCTGGTTTCATGGCTGAGGTAATTTATTTAATGTGATTATTCTTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCATGGCTGAGGTAATTTATTTAATGTGATTATTCTTTGAAAT  600

seq1  CATCTAGTTCCAATATGACAAGTTTGGCTTTGTAGAGTCCTAAGTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTCCAATATGACAAGTTTGGCTTTGTAGAGTCCTAAGTACACA  650

seq1  GAATATATTTTTTTCTTTTATTCTCCACCTACATAGTTAGAAATTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTTTTTTCTTTTATTCTCCACCTACATAGTTAGAAATTCCAGA  700

seq1  CAAACATAATTTGTCAAAGAGTAATCAGAGCTGTCTTCAGAGTGTTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAATTTGTCAAAGAGTAATCAGAGCTGTCTTCAGAGTGTTACCA  750

seq1  AGATACAAAGTCCCAACTGTCAAAGATATTATAGTAACTTATAACTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAAGTCCCAACTGTCAAAGATATTATAGTAACTTATAACTTAGT  800

seq1  GCTGTATTTGATCAGTATATTTAACCAGCCCGTTGCCTTGGAAAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTGATCAGTATATTTAACCAGCCCGTTGCCTTGGAAAAGAAAA  850

seq1  GCCACGATATTAGGCTGAGAGAGGCCAAAGCCCATCCCCCTTTGACTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGATATTAGGCTGAGAGAGGCCAAAGCCCATCCCCCTTTGACTTGC  900

seq1  TTGAATCTTTGTCTGTGTTAAATTACATTGGAGGGGGGCATTCACACAGT  950
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTGAATCTTTGTCTGTG-TAAATTACATGGGAGGGGGGCATTCACACAGT  949

seq1  TTGAGATTATGTTCTCCTAACAATGCCAATAAAACAGAGTTAAATCCAAA  1000
      |||||||||||||||||||   |||||||| |||||||||||||||||||
seq2  TTGAGATTATGTTCTCCTA--CATGCCAAT-AAACAGAGTTAAATCCAAA  996

seq1  CAGAGCCACTAACGGAAAGGAATGAAAACCAACTTTCAGTAAACCGAAC-  1049
      |||||||||| ||||||||| ||| ||||||||||||||||||||| || 
seq2  CAGAGCCACT-ACGGAAAGG-ATG-AAACCAACTTTCAGTAAACCGGACT  1043

seq1  TTGTCAGGGAAAGGGAGAGGATACAGCCGAGATGAAGCTGAAAAGCACAA  1099
      |||||| | ||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTCA-GTAAAGGGAGAGGATACAGCCGAGATG-AGCTGAAAAGCACAA  1091

seq1  GAGAAAAACAAAACCACTTGCAGCTCAAACGTGAGGATGTGAACAGAGGT  1149
      |||||||   ||||||| ||||||||||||||||||||||  || |||||
seq2  GAGAAAA--CAAACCAC-TGCAGCTCAAACGTGAGGATGT--ACCGAGGT  1136

seq1  ATGTAAACAAAACCATGATCCACTGGGAAGA-TCACTTGCCCTGCATTCA  1198
       ||| ||||||| |||||| | ||  | ||| |||||||  |||||||| 
seq2  -TGT-AACAAAA-CATGATTC-CT--GTAGATTCACTTG--CTGCATTC-  1177

seq1  GAGGTTGGACGGCAGCCAGCCTTACCTCTTCCAGCTGCACCATGAGAGTG  1248
      || ||  ||||| | |||||||||||| ||| | |||| ||||||||  |
seq2  GAAGT--GACGG-ATCCAGCCTTACCT-TTCGA-CTGC-CCATGAGA-AG  1220

seq1  ACATTGTGGCCCTGCTCTG  1267
        ||||||| |||||||||
seq2  TAATTGTGG-CCTGCTCTG  1238

seq1: chr19_50347786_50348313
seq2: B6Ng01-044H10.g_66_593 (reverse)

seq1  AGAAATGTTAATTTCAGGGTGGGGGTCCCACCCAGCTGGCTTATTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTAATTTCAGGGTGGGGGTCCCACCCAGCTGGCTTATTGTCTG  50

seq1  TGCTTCATAAAGGCAGGCATATCTCTGAATTCTTTTGCAATGTTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATAAAGGCAGGCATATCTCTGAATTCTTTTGCAATGTTAAAAAT  100

seq1  AAAAGTGTGTGTGTTTGCTGTCTCCTAAGAACCAAGAGACTGGGCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTGTGTGTTTGCTGTCTCCTAAGAACCAAGAGACTGGGCTTATA  150

seq1  GGATGCTGACTCATAGGATAATCAAGAGGGAACCCAGAGTAAATGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGACTCATAGGATAATCAAGAGGGAACCCAGAGTAAATGACTGA  200

seq1  ATTGATATGTAAAATAAAAGACACAGCTTACTATCTGCAAGAGATGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATGTAAAATAAAAGACACAGCTTACTATCTGCAAGAGATGGAGT  250

seq1  ATCCAGAAAATTTTTAAGGATAGCAACAGAACTTCGTGGAGAACTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAAATTTTTAAGGATAGCAACAGAACTTCGTGGAGAACTGTCTT  300

seq1  CCAGCAGAAGATAGAGTGATAGCTGTCTGGAGATCTCCAGAGAAAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAGATAGAGTGATAGCTGTCTGGAGATCTCCAGAGAAAGCAGA  350

seq1  ACAGGGAAACATCAGGCTCGAAAACTATCTCAAACAGAACATGGGTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAACATCAGGCTCGAAAACTATCTCAAACAGAACATGGGTCATC  400

seq1  AACTTAGACTCACAATCTGACTTTGAGTCCGTTGTTTTGCTGCTCTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGACTCACAATCTGACTTTGAGTCCGTTGTTTTGCTGCTCTCAAC  450

seq1  CACTCCTTCTTTCAGAACTTCTCTCCCAGGCTGAGGCTGGTCCTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTCTTTCAGAACTTCTCTCCCAGGCTGAGGCTGGTCCTTGGCAG  500

seq1  TTTATAACATGTTTCTTTCTCTGAATTC  528
      ||||||||||||||||||||||||||||
seq2  TTTATAACATGTTTCTTTCTCTGAATTC  528