BAC Information

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BAC

Clone NameB6Ng01-044J11
Chromosome6 (Build37)19 (Build37)
Map Location 56,871,728 - 56,872,92360,072,695 - 60,073,112
singlet/doubletsingletsinglet
Overlap geneNt5c3
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, LOC100042327
Downstream geneV1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J11.bB6Ng01-044J11.g
ACCDH870300DH870301
length1,166909
definitionDH870300|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J11, 5' end.DH870301|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,871,728 - 56,872,923)(60,072,695 - 60,073,112)
sequence
gaattccagaagtcactccatcacagaaacaatctgcagctgaaaaaagc
gcacccctactagagcctgcggcaaaccacagtcagctgccgtggacact
ctgaaccagacccatagctcacacttgggtttacaatgaaaacatatttt
tatagtatttctatgttttttaaagaagccagaactccagatttctcact
acagaaagaccttgccttaaaaggggatgggctaggagggcactgacgaa
gcaggtatggttgtctagcaggtgtaaagccctggggtctataccagtat
agaccatgtgtgtaagtacgggtagacgttaaaacagattcagggagtac
acaccaggataattaaattgtaaagtgccagccaacttcactaaatggct
tgtcttatctctctgaatacttctagtgtaccttttgattggttttctct
gggaatctagtttgccacattactggacatttccactatggcatgcatag
ctcactagcaaatccctaatgcctttcaattaaaaatgtcctgatggcca
gggtaactcaggaatgtaatcttgcactgagatggctgaggcaagagaaa
caccatcacccagaacgcaactggtgtcattttttcctagcctaccttgg
ttaggtagttatataccatctgtgatcagaacagcaatgttcagtgggta
tccttgggtttgtacacattctatgaaggaagagggtggagacaggtaca
gaggactccccaaacatgacttataaagagagagaacaagggccggaata
tatattttcacgtcatccaaatatttctcccatctaaaggaacaatcagc
ttaaaactataaaagtaaaaatattaaactcttttacatcttctactgaa
aaactattagggggtctgacgcatagtttaaaacaatgcatataaagact
gacttgtacagtacaaacaaaaatatttggcatattggtcccttagtact
tatacatgaaagtaaactcttcttagatttcgtggaaaatcagccactgt
ttagtaaatagagaaagacgcgaatcagctttttccactgatgaatttta
aattgagtatgacaaattaagcatgtattcgctaacagggaggaggcaaa
ctctcacaatgtttgc
gaattcctgtcaaggtctccatttattaggctgaaacaccgggttttaaa
gcatacatcgagggggaatagggaggggttgagggggaattaacaaagaa
caaagaagtgggcatcaggggacacgagggccgaagtcaggctccaggcg
gcgggcactctgcatcttatctccagaattcggatcctccttaatagcct
tggttgtcaggccgggctcagcatgtaactcatgtccttggaagtcatgg
gagtcagtaagagatagggaagagggtactataattcagcttatacagcc
tcaggtgccaggaagggaacagggagaagggaatgacgaacagctcctca
gcagaaggccattgggcttgtcaggatgggatactgtgaaaagcttgctt
tctcacggtatggtctccaacacttttggcaaagtaacatgatacaaaac
taatgcacaaaatttgtaaccctcttatatataaatgacaaatagagtga
gaaataaacaaaggaaaccagatctgtcagaaaaccataaaaaaatataa
actacttctgggtaattctaaccaagcaagtaaaagacttgtataagaaa
aactttacgacatttgaagaaagaaatttgaatatgatgtaaaaagaata
gtatggcttctgcaggggcagatcacaagcttttctactcctctgaacat
accccagtcagaaagcctcccaggaggaccactgcttgaagggaagtaat
aagggaccttccctaacagccacagctgctgggaatcctaagcagctgat
ggactcagaaccattacccttctacccccccccattacagtcctctttca
gccaatatcatctgctggggcagatcagcagattatctgctcctttgaag
acatcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56871728_56872923
seq2: B6Ng01-044J11.b_44_1209

seq1  GAATTCCAGAAGTCACTCCATCACAGAAACAATCTGCAGCTGAAAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGTCACTCCATCACAGAAACAATCTGCAGCTGAAAAAAGC  50

seq1  GCACCCCTACTAGAGCCTGCGGCAAACCACAGTCAGCTGCCGTGGACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTACTAGAGCCTGCGGCAAACCACAGTCAGCTGCCGTGGACACT  100

seq1  CTGAACCAGACCCATAGCTCACACTTGGGTTTACAATGAAAACATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCAGACCCATAGCTCACACTTGGGTTTACAATGAAAACATATTTT  150

seq1  TATAGTATTTCTATGTTTTTTAAAGAAGCCAGAACTCCAGATTTCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATTTCTATGTTTTTTAAAGAAGCCAGAACTCCAGATTTCTCACT  200

seq1  ACAGAAAGACCTTGCCTTAAAAGGGGATGGGCTAGGAGGGCACTGACGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGACCTTGCCTTAAAAGGGGATGGGCTAGGAGGGCACTGACGAA  250

seq1  GCAGGTATGGTTGTCTAGCAGGTGTAAAGCCCTGGGGTCTATACCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATGGTTGTCTAGCAGGTGTAAAGCCCTGGGGTCTATACCAGTAT  300

seq1  AGACCATGTGTGTAAGTACGGGTAGACGTTAAAACAGATTCAGGGAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGTGTGTAAGTACGGGTAGACGTTAAAACAGATTCAGGGAGTAC  350

seq1  ACACCAGGATAATTAAATTGTAAAGTGCCAGCCAACTTCACTAAATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGATAATTAAATTGTAAAGTGCCAGCCAACTTCACTAAATGGCT  400

seq1  TGTCTTATCTCTCTGAATACTTCTAGTGTACCTTTTGATTGGTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATCTCTCTGAATACTTCTAGTGTACCTTTTGATTGGTTTTCTCT  450

seq1  GGGAATCTAGTTTGCCACATTACTGGACATTTCCACTATGGCATGCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTAGTTTGCCACATTACTGGACATTTCCACTATGGCATGCATAG  500

seq1  CTCACTAGCAAATCCCTAATGCCTTTCAATTAAAAATGTCCTGATGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGCAAATCCCTAATGCCTTTCAATTAAAAATGTCCTGATGGCCA  550

seq1  GGGTAACTCAGGAATGTAATCTTGCACTGAGATGGCTGAGGCAAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACTCAGGAATGTAATCTTGCACTGAGATGGCTGAGGCAAGAGAAA  600

seq1  CACCATCACCCAGAACGCAACTGGTGTCATTTTTTCCTAGCCTACCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCACCCAGAACGCAACTGGTGTCATTTTTTCCTAGCCTACCTTGG  650

seq1  TTAGGTAGTTATATACCATCTGTGATCAGAACAGCAATGTTCAGTGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGTTATATACCATCTGTGATCAGAACAGCAATGTTCAGTGGGTA  700

seq1  TCCTTGGGTTTGTACACATTCTATGAAGGAAGAGGGTGGAGACAGGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGTTTGTACACATTCTATGAAGGAAGAGGGTGGAGACAGGTACA  750

seq1  GAGGACTCCCCAAACATGACTTATAAAGAGAGAGAACAAGGGCCGGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCCCCAAACATGACTTATAAAGAGAGAGAACAAGGGCCGGAATA  800

seq1  TATA-TTTCAGGTCATCCAAATATTTCTCCCATCTAAAGGAACAATCAGC  849
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCACGTCATCCAAATATTTCTCCCATCTAAAGGAACAATCAGC  850

seq1  -TAAAACTATAAAAGTAAAAATATTAAACTCTTTTACATCTTCTACTGAA  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTATAAAAGTAAAAATATTAAACTCTTTTACATCTTCTACTGAA  900

seq1  AAACTATTAGGGGGTCTGACGCATAGTTTAAAACAATGCATATAAAGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTAGGGGGTCTGACGCATAGTTTAAAACAATGCATATAAAGACT  950

seq1  GACTTGTACAGTACAAACAAAAAATATTTGGCATTATTGGTCCCTTAGTA  998
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GACTTGTACAGTACAAAC-AAAAATATTTGGCA-TATTGGTCCCTTAGTA  998

seq1  CTTTATACAATGAAAGTAAAACTCTTCCTTAAGATTTCGTGGAAAAATCA  1048
      | |||||| |||||||| |||||||||  | ||||||||||| |||||||
seq2  C-TTATAC-ATGAAAGT-AAACTCTTC--TTAGATTTCGTGG-AAAATCA  1042

seq1  GCCCACTGTTTAAGTACATAGAGAAAGACAGCGAAATCAGCTTTTTCCCA  1098
      | ||||||||| |||| |||||||||||| ||| |||||||||||| |||
seq2  G-CCACTGTTT-AGTAAATAGAGAAAGAC-GCG-AATCAGCTTTTT-CCA  1087

seq1  CTGATGGAAAATTATAAAATTTGAGTATGGAACAAAATAAAGCCATGTAA  1148
      ||||||   |||| ||||  |||||||||  ||||| |||   |||||  
seq2  CTGATG---AATTTTAAA--TTGAGTATG--ACAAATTAA--GCATGT--  1126

seq1  ATTCGCTAGACAGGGAGGGAGGCAAAACTTCTCACACAAAATGTTTGC  1196
      |||||||| ||||||| |||||||||    ||| |||  |||||||||
seq2  ATTCGCTA-ACAGGGA-GGAGGCAAA----CTCTCAC--AATGTTTGC  1166

seq1: chr19_60072695_60073112
seq2: B6Ng01-044J11.g_69_486

seq1  TTCCTATCAAGGTCTCCGTTTATTAGGCTGAAACTCTGGGTTTTAAAGCA  50
      ||||| ||||||||||| |||||||||||||||| | |||||||||||||
seq2  TTCCTGTCAAGGTCTCCATTTATTAGGCTGAAACACCGGGTTTTAAAGCA  50

seq1  TACATTGA-GGGGAATAGGGAGGGGTTGAGGGGGAATTAACAAAGAACAA  99
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  TACATCGAGGGGGAATAGGGAGGGGTTGAGGGGGAATTAACAAAGAACAA  100

seq1  AGAAGTGGGCATCAGGGGACATGAGGGCCGAAGTCAGGCACCAGGCGGCA  149
      ||||||||||||||||||||| ||||||||||||||||| ||||||||| 
seq2  AGAAGTGGGCATCAGGGGACACGAGGGCCGAAGTCAGGCTCCAGGCGGCG  150

seq1  GGCACTCTGTGTCTTATCTCCTGAAGGTGGAATCCTCCTTAACAGCCTTG  199
      |||||||||  |||||||||| |||  | | ||||||||||| |||||||
seq2  GGCACTCTGCATCTTATCTCCAGAA-TTCGGATCCTCCTTAATAGCCTTG  199

seq1  GGTGTCAGGCCAGGCTCAGCATGTAACTCATGTCCTTGGAAGTCATGGGA  249
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGGCCGGGCTCAGCATGTAACTCATGTCCTTGGAAGTCATGGGA  249

seq1  GTCAGGAAGAGATAAGGAAGAGGGGACTATAATTCAGCTTTTACAGCCTC  299
      ||||| |||||||| ||||||||| ||||||||||||||| |||||||||
seq2  GTCAGTAAGAGATAGGGAAGAGGGTACTATAATTCAGCTTATACAGCCTC  299

seq1  TGGTGCCAGGAAGGGAACAGGGAGAAGGGAGTGATGACCCGCTCCTTAGC  349
       ||||||||||||||||||||||||||||| ||| || | |||||| |||
seq2  AGGTGCCAGGAAGGGAACAGGGAGAAGGGAATGACGAACAGCTCCTCAGC  349

seq1  ACAAGGCCATTTGGCTTGTCAGGGTGGGAGACTGTGAAGGACTCGCTTTC  399
      | ||||||||| ||||||||||| ||||| ||||||||   || ||||||
seq2  AGAAGGCCATTGGGCTTGTCAGGATGGGATACTGTGAAAAGCTTGCTTTC  399

seq1  TCACGGTATGGTCTCCAAC  418
      |||||||||||||||||||
seq2  TCACGGTATGGTCTCCAAC  418