BAC Information

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BAC

Clone NameB6Ng01-045B12
Chromosome19 (Build37)
Map Location 58,657,526 - 58,766,626
singlet/doubletdoublet
Overlap genePnlip
Upstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045B12.bB6Ng01-045B12.g
ACCDH870652DH870653
length1,1221,048
definitionDH870652|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B12, 5' end.DH870653|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,765,400 - 58,766,626)(58,657,526 - 58,658,606)
sequence
gaattctgtgcatctggaattccgtacatctggaattttgtgcagctggg
attacggatactgcaaaacagacaatgtagagttgggaataaaaacccag
catggttgtgaacaaggatagcattgatgccctaaggggaagtatggagt
gggaggatccttagacaaatcttatgaatggctgtcgttcttagacactt
gcacccaagagaccaaatcagaaaagaatcagctgtgctatgtgtcatgc
aatccaacagttttctagtacaggaaactcaaagctaccagagttagtgc
aatagttaaaaaggcctgtgttttagctctgcagggaagccaactttgaa
aggagccacactctttacttcctttctgctttgttctattcgctggctca
taaagcaaaattcctctctttagctctctggaacactcatctgtagaagg
ccagctttgccaccagagggtaaactgaggcagtgagtgtggagtcagtg
attggggtccatgttgatagcaaccaatggggccccactgacagctgcaa
aagattaaaaggagaaacggaggaggggaaaacaggtgttgacagcacca
ggtgtgagcctctagaagaaacggaggaggggaaaacaggtgttgacagc
accaggtgtgagcctctagaagaaacggaggaggggaaaacaggtgttga
cagcaccaggtgtgagcctctagaaaaaaaggaggaggggaaaacaggtg
ttgacaacaccaggtgtgagcctctactgacaacagcgggcaactggaga
aaagagagagaagaagcttgtggcaatcaagcttaagctgcttcctgaga
gtggtcagagggagttgccactaatgatggccagagatcggagaaagaag
tagaaaaaatcacacaccacactcacaccctcacacactcacacacactc
atacacactcactggatgaagctaagcagctccaaccatctacacaacac
atatccctatgtacattatgcccatatacagactactatttagagacgaa
gaaagctcctacaataccacctaatttgtggaagagagcaagctctaacc
aataagctctaacaattttata
gaattcctgctttattgctctctaccttattcccatgaatctgggccttt
ccctacatcagcagctaggctggccatcagagaccctgtctctgtcccca
tccccgtgctggagttacaggtacatgcacggccacacctggctttacca
tatgggtttggaggaagattcttacctgctgagccatctttccggctgcc
aggatcacagacacttttactcgacaagtaacaccaagtcttccaacatt
ttagtctccattctgaaagtcacttagagaagtctgctgcaagggaggta
ggtactcctctctgggtgagtccaacacccagacagtgcaagtgccgagt
acgtccagcataaagcaggatgtcagattggtcagtgtttttccttgggg
gaacttacttaaatagctatgaaagcggtctttaaattcaaagtaaagac
cactatagagccacaaagacctcacaccacagtgttcagtgtcccccact
ttacagacaagagagtcaagacccagaaatgatgctctcagctacctatt
gtgcatgtcagaaacagagaccaatctgtatttccttttctgtggcccca
agtatctgctctttccctctccactgtcttccagtgtgagattgcgttat
cttttctgtaccatgtcctgaggggggaaaaatgtgaagttgaattcttc
cagaggaaatacatactttggctgaaatgcattttgtgttttatcccaca
gagaacaaaggcatgcatgttttccataagcctgaacagccgcaagtcct
cgtctgtagcagcccgagtgctgcctctcatgcgcaagagagcccagttg
tcttcatgttactgcacgacatcttttcatagtgaatttcattcatagaa
ataactagtcatctggggaaagggataaatagtattgagctggctgatga
gatatctagctttagctttgtgagtatgttatatgcatggatactattta
ttagattttactaactgtttcattttctgcgtgtggtgaatgcatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58765400_58766626
seq2: B6Ng01-045B12.b_46_1167 (reverse)

seq1  TATAAAAGAACTAAAGGAAAAAATAAAGTTGTTAGAGCCTGCTCATTAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTTTCTCTATCCATCAACTGTGTATATGTGTATGTGTGTATATAAAAT  100
                                                ||||||||
seq2  ------------------------------------------TATAAAAT  8

seq1  GGTTAGAGCTTATTTGTTAGAGCTTTGCTCT-ATCCACCAAATATGTGTG  149
       ||||||||||||| |||||||| |||||||  ||||| || || ||| |
seq2  TGTTAGAGCTTATTGGTTAGAGC-TTGCTCTCTTCCACAAATTAGGTG-G  56

seq1  TATATGTATGAGCTTTCTTCCGTCTACTAAATATGTATGTCTGTATATGT  199
      ||| |||| |||||||||| ||||| ||||||| ||| ||||||||||| 
seq2  TAT-TGTAGGAGCTTTCTT-CGTCT-CTAAATA-GTA-GTCTGTATATGG  101

seq1  GTATATATGTACATATGTGTATATGTGTATGTGTAAGATGGTTGGAGCCT  249
      | ||| |||||||||   | |||||||| ||||| |||||||||||| ||
seq2  GCATA-ATGTACATA--GGGATATGTGT-TGTGT-AGATGGTTGGAG-CT  145

seq1  GCTTTGCTTCATCCAGTGTGTGTGTATGAGTGTGTGTGTGTGTGTGTGTG  299
      |||| ||||||||||||| ||||||||||||||||||| ||||||| | |
seq2  GCTTAGCTTCATCCAGTGAGTGTGTATGAGTGTGTGTGAGTGTGTGAGGG  195

seq1  TGTGTGTGTGTGTGTGTGATTTTTTTCTACTTCTTTTCTCCGATCTCTGG  349
      |||| ||||| |||||||| ||||||||||||| ||||||||||||||||
seq2  TGTGAGTGTG-GTGTGTGA-TTTTTTCTACTTC-TTTCTCCGATCTCTGG  242

seq1  CCATCATTAGTGGCAACTCCCTCTGGCCACTCTCAGG-AGCAGCTTAAGC  398
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  CCATCATTAGTGGCAACTCCCTCTGACCACTCTCAGGAAGCAGCTTAAGC  292

seq1  -TGGTTGCCACAAGCTTCTTCTCTCTCTTTTCTCCAGTTGCCCGCTGTTG  447
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCCACAAGCTTCTTCTCTCTCTTTTCTCCAGTTGCCCGCTGTTG  342

seq1  TCAGTAGAGGCTCACACCTGGTGTTGTCAACACCTGTTTTCCCCTCCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAGGCTCACACCTGGTGTTGTCAACACCTGTTTTCCCCTCCTCC  392

seq1  TTTTTTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTTTTCCCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTTTTCCCCTC  442

seq1  CTCCGTTTCTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTTTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTCTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTTTTCC  492

seq1  CCTCCTCCGTTTCTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCGTTTCTTCTAGAGGCTCACACCTGGTGCTGTCAACACCTGTT  542

seq1  TTCCCCTCCTCCGTTTCTCCTTTTAATCTTTTGCAGCTGTCAGTGGGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCTCCGTTTCTCCTTTTAATCTTTTGCAGCTGTCAGTGGGGCC  592

seq1  CCATTGGTTGCTATCAACATGGACCCCAATCACTGACTCCACACTCACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTTGCTATCAACATGGACCCCAATCACTGACTCCACACTCACTG  642

seq1  CCTCAGTTTACCCTCTGGTGGCAAAGCTGGCCTTCTACAGATGAGTGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTACCCTCTGGTGGCAAAGCTGGCCTTCTACAGATGAGTGTTC  692

seq1  CAGAGAGCTAAAGAGAGGAATTTTGCTTTATGAGCCAGCGAATAGAACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTAAAGAGAGGAATTTTGCTTTATGAGCCAGCGAATAGAACAA  742

seq1  AGCAGAAAGGAAGTAAAGAGTGTGGCTCCTTTCAAAGTTGGCTTCCCTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAGGAAGTAAAGAGTGTGGCTCCTTTCAAAGTTGGCTTCCCTGC  792

seq1  AGAGCTAAAACACAGGCCTTTTTAACTATTGCACTAACTCTGGTAGCTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAACACAGGCCTTTTTAACTATTGCACTAACTCTGGTAGCTTT  842

seq1  GAGTTTCCTGTACTAGAAAACTGTTGGATTGCATGACACATAGCACAGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCTGTACTAGAAAACTGTTGGATTGCATGACACATAGCACAGCT  892

seq1  GATTCTTTTCTGATTTGGTCTCTTGGGTGCAAGTGTCTAAGAACGACAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTCTGATTTGGTCTCTTGGGTGCAAGTGTCTAAGAACGACAGC  942

seq1  CATTCATAAGATTTGTCTAAGGATCCTCCCACTCCATACTTCCCCTTAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAAGATTTGTCTAAGGATCCTCCCACTCCATACTTCCCCTTAGG  992

seq1  GCATCAATGCTATCCTTGTTCACAACCATGCTGGGTTTTTATTCCCAACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATGCTATCCTTGTTCACAACCATGCTGGGTTTTTATTCCCAACT  1042

seq1  CTACATTGTCTGTTTTGCAGTATCCGTAATCCCAGCTGCACAAAATTCCA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGTCTGTTTTGCAGTATCCGTAATCCCAGCTGCACAAAATTCCA  1092

seq1  GATGTACGGAATTCCAGATGCACAGAATTC  1227
      ||||||||||||||||||||||||||||||
seq2  GATGTACGGAATTCCAGATGCACAGAATTC  1122

seq1: chr19_58657526_58658606
seq2: B6Ng01-045B12.g_66_1113

seq1  GAATTCCTGCTTTATTGCTCTCTACCTTATTCCCATGAATCTGGGCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTTATTGCTCTCTACCTTATTCCCATGAATCTGGGCCTTT  50

seq1  CCCTACATCAGCAGCTAGGCTGGCCATCAGAGACCCTGTCTCTGTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACATCAGCAGCTAGGCTGGCCATCAGAGACCCTGTCTCTGTCCCCA  100

seq1  TCCCCGTGCTGGAGTTACAGGTACATGCACGGCCACACCTGGCTTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTGCTGGAGTTACAGGTACATGCACGGCCACACCTGGCTTTACCA  150

seq1  TATGGGTTTGGAGGAAGATTCTTACCTGCTGAGCCATCTTTCCGGCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTTGGAGGAAGATTCTTACCTGCTGAGCCATCTTTCCGGCTGCC  200

seq1  AGGATCACAGACACTTTTACTCGACAAGTAACACCAAGTCTTCCAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAGACACTTTTACTCGACAAGTAACACCAAGTCTTCCAACATT  250

seq1  TTAGTCTCCATTCTGAAAGTCACTTAGAGAAGTCTGCTGCAAGGGAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCCATTCTGAAAGTCACTTAGAGAAGTCTGCTGCAAGGGAGGTA  300

seq1  GGTACTCCTCTCTGGGTGAGTCCAACACCCAGACAGTGCAAGTGCCGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCCTCTCTGGGTGAGTCCAACACCCAGACAGTGCAAGTGCCGAGT  350

seq1  ACGTCCAGCATAAAGCAGGATGTCAGATTGGTCAGTGTTTTTCCTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCAGCATAAAGCAGGATGTCAGATTGGTCAGTGTTTTTCCTTGGGG  400

seq1  GAACTTACTTAAATAGCTATGAAAGCGGTCTTTAAATTCAAAGTAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACTTAAATAGCTATGAAAGCGGTCTTTAAATTCAAAGTAAAGAC  450

seq1  CACTATAGAGCCACAAAGACCTCACACCACAGTGTTCAGTGTCCCCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGAGCCACAAAGACCTCACACCACAGTGTTCAGTGTCCCCCACT  500

seq1  TTACAGACAAGAGAGTCAAGACCCAGAAATGATGCTCTCAGCTACCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACAAGAGAGTCAAGACCCAGAAATGATGCTCTCAGCTACCTATT  550

seq1  GTGCATGTCAGAAACAGAGACCAATCTGTATTTCCTTTTCTGTGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTCAGAAACAGAGACCAATCTGTATTTCCTTTTCTGTGGCCCCA  600

seq1  AGTATCTGCTCTTTCCCTCTCCACTGTCTTCCAGTGTGAGATTGCGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGCTCTTTCCCTCTCCACTGTCTTCCAGTGTGAGATTGCGTTAT  650

seq1  CTTTTCTGTACCATGTCCTGAGGGGGGAAAAATGTGAAGTTGAATTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTACCATGTCCTGAGGGGGGAAAAATGTGAAGTTGAATTCTTC  700

seq1  CAGAGGAAATACATACTTTGGCTGAAATGCATTTTGTGTTTTATCCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAATACATACTTTGGCTGAAATGCATTTTGTGTTTTATCCCACA  750

seq1  GAGAACAAAGGCATGCATGTTTTCCATAAGCCTGAACAAGCCGCAAGTCC  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAACAAAGGCATGCATGTTTTCCATAAGCCTGAAC-AGCCGCAAGTCC  799

seq1  TCGTCTGTAGCAGCCCGAGTGCTGCCTCTCATGCGCAAAGAGAGCCCAGT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCGTCTGTAGCAGCCCGAGTGCTGCCTCTCATGCGC-AAGAGAGCCCAGT  848

seq1  TGTCTTCATGTTACTGCACGACATCTTTTCATAAGTGAATTTCAATTCAT  900
      |||||||||||||||||||||||||||||||| |||||||||| ||||| 
seq2  TGTCTTCATGTTACTGCACGACATCTTTTCAT-AGTGAATTTC-ATTCA-  895

seq1  TAGAAATAAACTAGCCACCTGGGGAAAGGGATAAAATAGTATTGAGCTGG  950
      ||||||| |||||| || |||||||||||||| |||||||||||||||||
seq2  TAGAAAT-AACTAGTCATCTGGGGAAAGGGAT-AAATAGTATTGAGCTGG  943

seq1  CTGATGAGATTATCTAGCCTTTAGCTTTGTTGGAGGTAAATGTTTAATAA  1000
      ||||||||| ||||||| ||||||||||||  |||    |||||     |
seq2  CTGATGAGA-TATCTAG-CTTTAGCTTTGT--GAG---TATGTT-----A  981

seq1  TTGGCATGGGAATACATATTTATTAGATTTTGTACATAAAACTGTTTTCA  1050
      |  ||||||  |||| ||||||||||||||  |||    ||||| |||||
seq2  TATGCATGG--ATAC-TATTTATTAGATTT--TAC---TAACTG-TTTCA  1022

seq1  TTTTTTCTGTCTGTGTGT-GTGAATGCATGTT  1081
      |||      |||| |||| |||||||||||||
seq2  TTT------TCTGCGTGTGGTGAATGCATGTT  1048