BAC Information

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BAC

Clone NameB6Ng01-045H20
Chromosome19 (Build37)
Map Location 15,595,138 - 15,628,700
singlet/doubletdoublet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045H20.bB6Ng01-045H20.g
ACCDH870931DH870932
length927898
definitionDH870931|Mus musculus domesticus DNA, BAC clone: B6Ng01-045H20, 5' end.DH870932|Mus musculus domesticus DNA, BAC clone: B6Ng01-045H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,595,138 - 15,596,078)(15,627,791 - 15,628,700)
sequence
gaattcacaaaggctgcaatcacatgagcaactccagcccaattacagaa
ctacaagcttccctgccagttaggcactgtgatcccttcagtgaccaagg
cagataggaacgcacaatggcacctggggagacccctgattcagccaata
gaactttggagcagaaatgtgtcatctgttgatgatcgcttcactcaggg
aagtgaacctaagatacagctgagtttagaagacagcaagcagtgtaagc
cgccattttgcgccaccagatcacaatgttggcctccatagaagaatgct
ctccccaaaagaaactggtaagtgcaggataaccttgaccatcttaaccc
ctttaattcttcttttgacttttgaccaccaaggttcctactgtgacgtt
cctcacagcttttgttcaagaagcttgttttatcgaaaataaggaatgca
gtggaccattttcactgagtttctttatcagcccaaagactagaaacagt
acttcaagagattggacaatgccttccaggaggcagtctgttttccatat
agaaagccatttctaccacagctaaaatgccaggatactgaatatgaaag
aggtttatctcactacgtctttaatgagccactagaaaggttttactttc
tattccccttacttaagctctgagggtccacaggtcttcatttctgagga
agaaatgcctccatgggaaacctagcaagtctctggaactggatgccgga
attggtacttaaacattctcaaagctcatgctaacgagacacaagctaaa
tcttttgaaagttgtcagagcaaatggaatctctttgtcaaccttcacaa
aaatagagtcagatattagatttcacgtatactatcagagagcccatgac
acgcaactttatatgcccagtacaggg
gaattcaacccctgtggcatcattcagcaggccagacagagccatgattt
aggacattcccaacattttatggcaatttgtttcatttgccgcaggccca
taacgatgcaaattgccataaagtgggataatcaggcagtagaagtgtca
taaaactgcaggggaaacaaatttccatcttggaactttgcatgccgatg
aacatgggggagagtaaatgtggacctggctttccccgtgttctctggtt
gccaaagtctatgccaagcagaaatgattccattttgtcaatttgtactc
atttcaagccaaggagaggggatgaaagaggtccagaaaatacgaggatg
cattgggccaaagtcttcttcacacacttggcctctggtaccaggaggaa
tggcccagtgaagggaggccaaatgtatgccattagatagatggaggcca
aatgaaagaactgttaagggttggagtgctttggccttcggaaatgtcaa
agtacttccctggatacatttctgggatcacttctctgtctctcttgcca
caaaagggttgtgtcacagtgagaaaggacagaatggatggagcaaggtc
aggacacagctctctgggccctgctgagaatgggatgaggctgcaaggaa
caggtctatgctcacaaacccattgactgttcttgaagatcacataccca
ttgactgttcttgaagatcacatacccattgattgattgttcttgaagag
gagtgggaagttttctcaaaggctgagaagcagactctcatgtttctgct
gtttcctttctctggttctctagatcatggaccactctgcttgtgtcgga
cggactcagggtcatccagacacccagaaagccagagttttgctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15595138_15596078
seq2: B6Ng01-045H20.b_44_970

seq1  GAATTCACAAAGGCTGCAATCACATGAGCAACTCCAGCCCAATTACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGGCTGCAATCACATGAGCAACTCCAGCCCAATTACAGAA  50

seq1  CTACAAGCTTCCCTGCCAGTTAGGCACTGTGATCCCTTCAGTGACCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCTTCCCTGCCAGTTAGGCACTGTGATCCCTTCAGTGACCAAGG  100

seq1  CAGATAGGAACGCACAATGGCACCTGGGGAGACCCCTGATTCAGCCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGAACGCACAATGGCACCTGGGGAGACCCCTGATTCAGCCAATA  150

seq1  GAACTTTGGAGCAGAAATGTGTCATCTGTTGATGATCGCTTCACTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGGAGCAGAAATGTGTCATCTGTTGATGATCGCTTCACTCAGGG  200

seq1  AAGTGAACCTAAGATACAGCTGAGTTTAGAAGACAGCAAGCAGTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACCTAAGATACAGCTGAGTTTAGAAGACAGCAAGCAGTGTAAGC  250

seq1  CGCCATTTTGCGCCACCAGATCACAATGTTGGCCTCCATAGAAGAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATTTTGCGCCACCAGATCACAATGTTGGCCTCCATAGAAGAATGCT  300

seq1  CTCCCCAAAAGAAACTGGTAAGTGCAGGATAACCTTGACCATCTTAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAAAGAAACTGGTAAGTGCAGGATAACCTTGACCATCTTAACCC  350

seq1  CTTTAATTCTTCTTTTGACTTTTGACCACCAAGGTTCCTACTGTGACGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTTCTTTTGACTTTTGACCACCAAGGTTCCTACTGTGACGTT  400

seq1  CCTCACAGCTTTTGTTCAAGAAGCTTGTTTTATCGAAAATAAGGAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGCTTTTGTTCAAGAAGCTTGTTTTATCGAAAATAAGGAATGCA  450

seq1  GTGGACCATTTTCACTGAGTTTCTTTATCAGCCCAAAGACTAGAAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCATTTTCACTGAGTTTCTTTATCAGCCCAAAGACTAGAAACAGT  500

seq1  ACTTCAAGAGATTGGACAATGCCTTCCAGGAGGCAGTCTGTTTTCCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGAGATTGGACAATGCCTTCCAGGAGGCAGTCTGTTTTCCATAT  550

seq1  AGAAAGCCATTTCTACCACAGCTAAAATGCCAGGATACTGAATATGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCATTTCTACCACAGCTAAAATGCCAGGATACTGAATATGAAAG  600

seq1  AGGTTTATCTCACTACGTCTTTAATGAGCCACTAGAAAGGTTTTACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATCTCACTACGTCTTTAATGAGCCACTAGAAAGGTTTTACTTTC  650

seq1  TATTCCCCTTACTTAAGCTCTGAGGGTCCACAGGTCTTCATTTCTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTTACTTAAGCTCTGAGGGTCCACAGGTCTTCATTTCTGAGGA  700

seq1  AGAAATGCCTCCATGGGAAACCTAGCAAGTCTCTGGAACTGGATGCCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCTCCATGGGAAACCTAGCAAGTCTCTGGAACTGGATGCCGGA  750

seq1  ATTGGTACTTAAACATTCTCAAAGCTCATGCTAACGAGACAACAAGCTAA  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTGGTACTTAAACATTCTCAAAGCTCATGCTAACGAGAC-ACAAGCTAA  799

seq1  ATCTTTTGAAAGTTGTCAGAAGCAAAATGGAATCTCTTTGTCAAACCTTC  850
      ||||||||||||||||||| ||| |||||||||||||||||| |||||||
seq2  ATCTTTTGAAAGTTGTCAG-AGC-AAATGGAATCTCTTTGTC-AACCTTC  846

seq1  ACAATAAATAGAGTCAGGATATTAGGATTTCACGTATACCTATCAAGAGA  900
      |||| ||||||||||| ||||||| ||||||||||||| ||||| |||||
seq2  ACAA-AAATAGAGTCA-GATATTA-GATTTCACGTATA-CTATC-AGAGA  891

seq1  GGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGG  941
       ||||||  ||||||| ||||||||||| ||||||||||||
seq2  -GCCCAT--GACACGC-AACTTTATATG-CCCAGTACAGGG  927

seq1: chr19_15627791_15628700
seq2: B6Ng01-045H20.g_68_965 (reverse)

seq1  TATCAGCAAAAACTCTGGGCTTTCTGGGTGTTCCTGGGATGACCCCTGAG  50
      ||||||| |||||||| ||||||||||||||  || |||||| |||||||
seq2  TATCAGC-AAAACTCT-GGCTTTCTGGGTGT--CT-GGATGA-CCCTGAG  44

seq1  TCCGTCCGACACAAGCAGAGTGGTCCATGATCTAGAAGGAAACCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  TCCGTCCGACACAAGCAGAGTGGTCCATGATCTAGA---GAACCAGAGAA  91

seq1  AGGAAACAGCAGAAAACAATGAGAGTCTGCTTCTCAGCCTTTGAAGAAAA  150
      |||||||||||||||   ||||||||||||||||||||||||| ||||||
seq2  AGGAAACAGCAGAAA--CATGAGAGTCTGCTTCTCAGCCTTTG-AGAAAA  138

seq1  CTTCCCACTCCTCTTCAAGAACAATCAATCAATGGGTATGTGATCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTCCTCTTCAAGAACAATCAATCAATGGGTATGTGATCTTCAA  188

seq1  GAACAGTCAATGGGTATGTGATCTTCAAGAACAGTCAATGGGTTTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCAATGGGTATGTGATCTTCAAGAACAGTCAATGGGTTTGTGAG  238

seq1  CATAGACCTGTTCCTTGCAGCCTCATCCCATTCTCAGCAGGGCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCTGTTCCTTGCAGCCTCATCCCATTCTCAGCAGGGCCCAGAGA  288

seq1  GCTGTGTCCTGACCTTGCTCCATCCATTCTGTCCTTTCTCACTGTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCTGACCTTGCTCCATCCATTCTGTCCTTTCTCACTGTGACAC  338

seq1  AACCCTTTTGTGGCAAGAGAGACAGAGAAGTGATCCCAGAAATGTATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTTGTGGCAAGAGAGACAGAGAAGTGATCCCAGAAATGTATCCA  388

seq1  GGGAAGTACTTTGACATTTCCGAAGGCCAAAGCACTCCAACCCTTAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTACTTTGACATTTCCGAAGGCCAAAGCACTCCAACCCTTAACAG  438

seq1  TTCTTTCATTTGGCCTCCATCTATCTAATGGCATACATTTGGCCTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTTGGCCTCCATCTATCTAATGGCATACATTTGGCCTCCCTT  488

seq1  CACTGGGCCATTCCTCCTGGTACCAGAGGCCAAGTGTGTGAAGAAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCCATTCCTCCTGGTACCAGAGGCCAAGTGTGTGAAGAAGACTT  538

seq1  TGGCCCAATGCATCCTCGTATTTTCTGGACCTCTTTCATCCCCTCTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAATGCATCCTCGTATTTTCTGGACCTCTTTCATCCCCTCTCCTT  588

seq1  GGCTTGAAATGAGTACAAATTGACAAAATGGAATCATTTCTGCTTGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAAATGAGTACAAATTGACAAAATGGAATCATTTCTGCTTGGCAT  638

seq1  AGACTTTGGCAACCAGAGAACACGGGGAAAGCCAGGTCCACATTTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGCAACCAGAGAACACGGGGAAAGCCAGGTCCACATTTACTCT  688

seq1  CCCCCATGTTCATCGGCATGCAAAGTTCCAAGATGGAAATTTGTTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGTTCATCGGCATGCAAAGTTCCAAGATGGAAATTTGTTTCCCC  738

seq1  TGCAGTTTTATGACACTTCTACTGCCTGATTATCCCACTTTATGGCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTATGACACTTCTACTGCCTGATTATCCCACTTTATGGCAATT  788

seq1  TGCATCGTTATGGGCCTGCGGCAAATGAAACAAATTGCCATAAAATGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGTTATGGGCCTGCGGCAAATGAAACAAATTGCCATAAAATGTTG  838

seq1  GGAATGTCCTAAATCATGGCTCTGTCTGGCCTGCTGAATGATGCCACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCCTAAATCATGGCTCTGTCTGGCCTGCTGAATGATGCCACAGG  888

seq1  GGTTGAATTC  910
      ||||||||||
seq2  GGTTGAATTC  898