BAC Information

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BAC

Clone NameB6Ng01-045N02
Chromosome19 (Build37)
Map Location 36,633,908 - 36,739,314
singlet/doubletdoublet
Overlap geneHectd2, LOC668215
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream genePpp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045N02.bB6Ng01-045N02.g
ACCDH871162DH871163
length981685
definitionDH871162|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N02, 5' end.DH871163|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,738,336 - 36,739,314)(36,633,908 - 36,634,589)
sequence
gaattcttttctttctctgcagtcagtgacagggcagacgaatagaccat
cacagaagcatatacccactccagatggggaaaatgttcctgttgctttt
cctgacttgaggctaaatttggctttcacacccaaaccacttcagcctca
aaaagaaaaaaaaatagtgacagctctccacttaagtgaggaaactgata
attacctcccaggatggtgtgacagttatgtggacctaaggacttagcag
acagtggagttctgtgcgagggaatggatctcagcaggtttttgccctca
tgttgcaagttgttaaaattaccatcaatgtgagggtgtccgtgattggc
agtgtctcgttctaaacttggggtggtggaaattctcggtccgtggcatc
tctctttgttggaaaacactctccatctctgctccaaagcccaagcttca
tgtctctctgcaccaactcttcctctttcattaagagtattattatgctg
ttcggtgtagatgctcaactcagaaactccctaagtgtctaagatggcag
cagccaacccagaatgtgttgagaagcccatccagggccaggatggccag
ccagatcagtggactttcaatgtagggcaagggctgttgtgtatgtcttg
ttataggacaaagaggaagtctgatcaatcaaagtgaaattaaaaattaa
catgcttctgtttgctcacttataatctttgaagaggtcaatacccaggg
acccgagccagcaacctggtttgaggctggccacagaatatgcttgaaga
ccagtttgggtaaacaggatcgagagcagctgggcaggattggggttaat
tacagtgagattatgggcacctcacaaagagcttaaacatcccttttctg
agggctggcgtttgttgctgctggcatggagagtttgaagaggacctgga
gtctttggatggcatgtgcttcagtgtcgct
gaattcctcgaatagaggaacaacataatgaagttgttggtagtgtgtag
ttaaactggaggaagtaggaggaagaaagtgaaggaaggagggttgtggt
tcatgcttgagatggtgagcacacccactggagtgttgaccacaggatta
actgtacagagtagaagaacccacacagtgtggaacctcggcgacagtaa
tgaaagatagaaggattaatacaggggaaaaaagacagttccagaaagag
tttctcaggaggaagaagaagaggaagaagagaaggaagaggatggaagg
aaaaagaaggcagaaaaaggaggaagaggaggaagaggaggaagaagagg
aagaggaagcatattaaaataaaacaatccagccagtaacattttaaaaa
aatgttgtgtgtgtgtgtgtttacctaaactctgcacagcttagcatttt
gaacagtcttatatatgtaaccttttgtgcattttgtctatcatattcta
aatgaggtgatgtagggagagaatgaaaaaataatagtgaatgtatctta
cataatttaataaaactaagattttttaaatacatatgacctgatctagt
ggtccatgctttccagcctagcactttttgggagataaaggtagaccaga
ctcttgagctgttagacagtcaagactacatagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36738336_36739314
seq2: B6Ng01-045N02.b_45_1025 (reverse)

seq1  AGCGAACCACTGGAGCACATGCCATCCAAAGACTCCAGGTCCTC-TCCAA  49
      |||||  ||||| ||||||||||||||||||||||||||||||| || ||
seq2  AGCGA--CACTGAAGCACATGCCATCCAAAGACTCCAGGTCCTCTTCAAA  48

seq1  CTCTCCATGCCAGCAGC-ACAAACGCCAGCCCTCAG-AAAGGGATGTTTA  97
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  CTCTCCATGCCAGCAGCAACAAACGCCAGCCCTCAGAAAAGGGATGTTTA  98

seq1  AGCTCTTTGTGA-GTGCCCATATCCTCACTGTAATTAACCCCAATCCTGC  146
      |||||||||||| |||||||||  ||||||||||||||||||||||||||
seq2  AGCTCTTTGTGAGGTGCCCATAATCTCACTGTAATTAACCCCAATCCTGC  148

seq1  CCAGCTGCTCTCGATCCTGTTTACCCAAACTGGTCTTCAAGCATATTCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTCTCGATCCTGTTTACCCAAACTGGTCTTCAAGCATATTCTG  198

seq1  TGGCCAGCCTCAAACCAGGTTGCTGGCTCGGGTCCCTGGGTATTGACCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCTCAAACCAGGTTGCTGGCTCGGGTCCCTGGGTATTGACCTC  248

seq1  TTCAAAGATTATAAGTGAGCAAACAGAAGCATGTTAATTTTTAATTTCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGATTATAAGTGAGCAAACAGAAGCATGTTAATTTTTAATTTCAC  298

seq1  TTTGATTGATCAGACTTCCTCTTTGTCCTATAACAAGACATACACAACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGATCAGACTTCCTCTTTGTCCTATAACAAGACATACACAACAG  348

seq1  CCCTTGCCCTACATTGAAAGTCCACTGATCTGGCTGGCCATCCTGGCCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCCTACATTGAAAGTCCACTGATCTGGCTGGCCATCCTGGCCCT  398

seq1  GGATGGGCTTCTCAACACATTCTGGGTTGGCTGCTGCCATCTTAGACACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTTCTCAACACATTCTGGGTTGGCTGCTGCCATCTTAGACACT  448

seq1  TAGGGAGTTTCTGAGTTGAGCATCTACACCGAACAGCATAATAATACTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTTTCTGAGTTGAGCATCTACACCGAACAGCATAATAATACTCT  498

seq1  TAATGAAAGAGGAAGAGTTGGTGCAGAGAGACATGAAGCTTGGGCTTTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGAGGAAGAGTTGGTGCAGAGAGACATGAAGCTTGGGCTTTGG  548

seq1  AGCAGAGATGGAGAGTGTTTTCCAACAAAGAGAGATGCCACGGACCGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATGGAGAGTGTTTTCCAACAAAGAGAGATGCCACGGACCGAGA  598

seq1  ATTTCCACCACCCCAAGTTTAGAACGAGACACTGCCAATCACGGACACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACCACCCCAAGTTTAGAACGAGACACTGCCAATCACGGACACCC  648

seq1  TCACATTGATGGTAATTTTAACAACTTGCAACATGAGGGCAAAAACCTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGATGGTAATTTTAACAACTTGCAACATGAGGGCAAAAACCTGC  698

seq1  TGAGATCCATTCCCTCGCACAGAACTCCACTGTCTGCTAAGTCCTTAGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCATTCCCTCGCACAGAACTCCACTGTCTGCTAAGTCCTTAGGT  748

seq1  CCACATAACTGTCACACCATCCTGGGAGGTAATTATCAGTTTCCTCACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAACTGTCACACCATCCTGGGAGGTAATTATCAGTTTCCTCACTT  798

seq1  AAGTGGAGAGCTGTCACTATTTTTTTTTCTTTTTGAGGCTGAAGTGGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGAGCTGTCACTATTTTTTTTTCTTTTTGAGGCTGAAGTGGTTT  848

seq1  GGGTGTGAAAGCCAAATTTAGCCTCAAGTCAGGAAAAGCAACAGGAACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAAAGCCAAATTTAGCCTCAAGTCAGGAAAAGCAACAGGAACAT  898

seq1  TTTCCCCATCTGGAGTGGGTATATGCTTCTGTGATGGTCTATTCGTCTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATCTGGAGTGGGTATATGCTTCTGTGATGGTCTATTCGTCTGC  948

seq1  CCTGTCACTGACTGCAGAGAAAGAAAAGAATTC  979
      |||||||||||||||||||||||||||||||||
seq2  CCTGTCACTGACTGCAGAGAAAGAAAAGAATTC  981

seq1: chr19_36633908_36634589
seq2: B6Ng01-045N02.g_68_752

seq1  GAATTCCTCGAATAGAGGAACAACATAATGAAGTTGTTGGTAGTGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGAATAGAGGAACAACATAATGAAGTTGTTGGTAGTGTGTAG  50

seq1  TTAAACTGGAGGAAGTAGGAGGAAGAAAGTGAAGGAAGGAGGGTTGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGGAGGAAGTAGGAGGAAGAAAGTGAAGGAAGGAGGGTTGTGGT  100

seq1  TCATGCTTGAGATGGTGAGCACACCCACTGGAGTGTTGACCACAGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTGAGATGGTGAGCACACCCACTGGAGTGTTGACCACAGGATTA  150

seq1  ACTGTACAGAGTAGAAGAACCCACACAGTGTGGAACCTCGGCGACAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGAGTAGAAGAACCCACACAGTGTGGAACCTCGGCGACAGTAA  200

seq1  TGAAAGATAGAAGGATTAATACAGGGGAAAAAAGACAGTTCCAGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAGAAGGATTAATACAGGGGAAAAAAGACAGTTCCAGAAAGAG  250

seq1  TTTCTCAGGAGGAAGAAGAAGAGGAAGAAGAGAAGGAAGAGGATGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGAGGAAGAAGAAGAGGAAGAAGAGAAGGAAGAGGATGGAAGG  300

seq1  AAAAAGAAGGCAGAAAAAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGCAGAAAAAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGG  350

seq1  AAGAGGAAGCATATTAAAATAAAACAATCCAGCCAGTAACATTTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGCATATTAAAATAAAACAATCCAGCCAGTAACATTTTAAAAA  400

seq1  AATGTTGTGTGTGTGTGTGTTTACCTAAACTCTGCACAGCTTAGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTGTGTGTGTGTGTTTACCTAAACTCTGCACAGCTTAGCATTTT  450

seq1  GAACAGTCTTATATATGTAACCTTTTGTGCATTTTGTCTATCATATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTTATATATGTAACCTTTTGTGCATTTTGTCTATCATATTCTA  500

seq1  AATGAGGTGATGTAGGGAGAGAATGAAAAAATAATAGTGAATGTATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTGATGTAGGGAGAGAATGAAAAAATAATAGTGAATGTATCTTA  550

seq1  CATAATTTAAT-AAACTAAGATTTTTTAAATACATATGACCTGATCTAGT  599
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAATAAAACTAAGATTTTTTAAATACATATGACCTGATCTAGT  600

seq1  GGTCCATGC-TTCCAGCCTAGCAC-TTTTGGGAGATAAAGGTAGACCAGA  647
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  GGTCCATGCTTTCCAGCCTAGCACTTTTTGGGAGATAAAGGTAGACCAGA  650

seq1  CTCTTGAGCTGTAGGACAGTCAAGACTACATAGTG  682
      ||||||||||||  |||||||||||||||||||||
seq2  CTCTTGAGCTGTTAGACAGTCAAGACTACATAGTG  685