BAC Information

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BAC

Clone NameB6Ng01-046C06
Chromosome19 (Build37)
Map Location 11,618,518 - 11,619,571
singlet/doubletsinglet
Overlap geneMs4a4d
Upstream gene5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b
Downstream geneLOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C06.bB6Ng01-046C06.g
ACCDH871396DH871397
length1,1071,037
definitionDH871396|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C06, 5' end.DH871397|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctttagctctctctttcccccagttttgatagggttatttggt
tctctggagcctaacttcttgagttctttgtatatattggatgtaggatt
agtaaagatattttatcaatcttttggctgctgttttgtcctattgcctt
tcagaagctttgcaattttatgaggtcccatttgtgaattcttgatctta
gagcataagtcatgggtgttctgttctgaaactgtgcccatgtgttcaag
acttttccccactttctcttctattagattcagtgtaactgtttttatgt
agaggtccgtgatccccttggacagggcaataagaatagatcaatttgca
ttattctacatgttgacctccagttgaaccagcaccatttgttgaaaatg
ctgtcttttttccagtggatggttttagcttctttgtcaaagatcaagtg
accataggtatgtgggtttattctgagtcttcggttctattctgttgatc
tacatgcctgtcactgtaccaatagaatgcagtattttttttttttttta
aatcatgattgctctgtagtacagcttgaggtcaggggtggtgatttacc
cagaagttcttttattgttgagaatattccagatgaatttgcaaattgca
ctttgtaactctatgaagaattgagttggaattttgatggggattgtatt
gaatctgtagattgctttcagcaagatggccatttgtactatattagtcc
tgtcaatccttgaacatgggagatctttccatcttctgaggtcttctttg
attatttcttctaagacttgaagttgtgtcatacagatctttcaattgct
tggtagagtcacaccaaggtattttatattatttgtgactatttaagaat
gtatttcccgatttcttctcagctgtttatcttgagtatagagtactcat
tgttgagtaattatatcagccacttgctgagtttatcagtggaggagtct
ctggagagtttgggtcactagtacacaatcactctgcaaaagaattgact
cttcttcatggtcttggcccgtgtgcgagtgctagcagactagatcatat
gatagat
gaattcattacaagtctctgacagtagagtttcctgcacacacaatacat
ttaaaatatatatacaccgttctctaggaaaacacgttcctctagaaaaa
cacatgtaactaaaatgtatgattttttaaaaacagatttgcaaatgcca
tctaaatggtattagtctgagtatgttatatctttaaaattgtatgtttg
ttatttttgatatgtctgctttgtttagttttaattttacttgctattaa
tacttaataaacaaagtaatgggtcatacaacattttcatatctcatagt
attttgtttatattcctttgccagagttttacaaaaagtaaatctccaaa
cttatcatcacaataagcgatattattttcttgtggaataaaaactctgt
taatgggagccactccttttgagtatatttcacaataaatatacatgcct
tggaggaagagtcaaaagtcagttaacagtttttatagaagagtaggaag
tggttgtgttctttcagagattcctatcatagcctttatgttttagaaag
gtgctagaagaattatgcaaatttaagctgagcgagatgctgagtgtggg
gtggccactggctctgtacaatgactctggggtgccttttcagagcttgg
ccctcctctcacaaaggacaggcattatggaagtaggtaggtgcaggaat
ttgccttcctaggcttcaacatgatggcttttaatttactggatgaacat
gggacatctaggtaaaaatgagaaaaatgaggtcaccttccactacatac
actaggctttggacctgagtgaggttgagtgcacacttaactgtaccttg
ggaggcagtttttggtgcaaagataagacaaggaaatataaataaaggct
tgttaaagtgacagcaatagtttctctcagtgtctatgacctcacagtca
caggagctccctaaggtatccagtcctaagtgtcatcctaacacatgtac
acacagcacattaaatggaccaacagtgttgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11618518_11619571
seq2: B6Ng01-046C06.g_66_1102

seq1  GAATTCATTACAAGTCTCTGACAGTAGAGTTTCCTGCACACACAATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACAAGTCTCTGACAGTAGAGTTTCCTGCACACACAATACAT  50

seq1  TTAAAATATATATACACCGTTCTCTAGGAAAACACGTTCCTCTAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATATACACCGTTCTCTAGGAAAACACGTTCCTCTAGAAAAA  100

seq1  CACATGTAACTAAAATGTATGATTTTTTAAAAACAGATTTGCAAATGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAACTAAAATGTATGATTTTTTAAAAACAGATTTGCAAATGCCA  150

seq1  TCTAAATGGTATTAGTCTGAGTATGTTATATCTTTAAAATTGTATGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGGTATTAGTCTGAGTATGTTATATCTTTAAAATTGTATGTTTG  200

seq1  TTATTTTTGATATGTCTGCTTTGTTTAGTTTTAATTTTACTTGCTATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGATATGTCTGCTTTGTTTAGTTTTAATTTTACTTGCTATTAA  250

seq1  TACTTAATAAACAAAGTAATGGGTCATACAACATTTTCATATCTCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATAAACAAAGTAATGGGTCATACAACATTTTCATATCTCATAGT  300

seq1  ATTTTGTTTATATTCCTTTGCCAGAGTTTTACAAAAAGTAAATCTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTATATTCCTTTGCCAGAGTTTTACAAAAAGTAAATCTCCAAA  350

seq1  CTTATCATCACAATAAGCGATATTATTTTCTTGTGGAATAAAAACTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATCACAATAAGCGATATTATTTTCTTGTGGAATAAAAACTCTGT  400

seq1  TAATGGGAGCCACTCCTTTTGAGTATATTTCACAATAAATATACATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAGCCACTCCTTTTGAGTATATTTCACAATAAATATACATGCCT  450

seq1  TGGAGGAAGAGTCAAAAGTCAGTTAACAGTTTTTATAGAAGAGTAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGAGTCAAAAGTCAGTTAACAGTTTTTATAGAAGAGTAGGAAG  500

seq1  TGGTTGTGTTCTTTCAGAGATTCCTATCATAGCCTTTATGTTTTAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGTTCTTTCAGAGATTCCTATCATAGCCTTTATGTTTTAGAAAG  550

seq1  GTGCTAGAAGAATTATGCAAATTTAAGCTGAGCGAGATGCTGAGTGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGAAGAATTATGCAAATTTAAGCTGAGCGAGATGCTGAGTGTGGG  600

seq1  GTGGCCACTGGCTCTGTACAATGACTCTGGGGTGCCTTTTCAGAGCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTGGCTCTGTACAATGACTCTGGGGTGCCTTTTCAGAGCTTGG  650

seq1  CCCTCCTCTCACAAAGGACAGGCATTATGGAAGTAGGTAGGTGCAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCACAAAGGACAGGCATTATGGAAGTAGGTAGGTGCAGGAAT  700

seq1  TTGCCTTCCTAGGCTTCAACATGATGGCTTTTAATTTACTGGATGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCCTAGGCTTCAACATGATGGCTTTTAATTTACTGGATGAACAT  750

seq1  GGGACATCTAGGTAAAAATGAGAAAAATGAGGTCACCTTCCACTACATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCTAGGTAAAAATGAGAAAAATGAGGTCACCTTCCACTACATAC  800

seq1  ACTAGGCTTTGGACCTGAGTGAGGTTGAGTGCACACTTAACTGTACCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTTTGGACCTGAGTGAGGTTGAGTGCACACTTAACTGTACCTTG  850

seq1  GGAGGCAGTTTTTGGTGCAAAGAATAAGGACAAGGAAATAATAAAATAAA  900
      |||||||||||||||||||||| |||| ||||||||||||   |||||||
seq2  GGAGGCAGTTTTTGGTGCAAAG-ATAA-GACAAGGAAATA--TAAATAAA  896

seq1  GGCTTGTTTAAAGTGACAGCAATAGTTTCTCCTCCAGTGTCTATGACCTC  950
      |||||| ||||||||||||||||||||||||   ||||||||||||||||
seq2  GGCTTG-TTAAAGTGACAGCAATAGTTTCTC--TCAGTGTCTATGACCTC  943

seq1  ACCAGTCACAGGAGCTCCCTAAGGGTTATCCAGTCCTAAGTGGTCATCCC  1000
      | ||||||||||||||||||||||  ||||||||||||||| ||||||| 
seq2  A-CAGTCACAGGAGCTCCCTAAGG--TATCCAGTCCTAAGT-GTCATCC-  988

seq1  TAAACACATGTACACACAAGCAACATTAAATGGACCCAACAGTGTGTGTG  1050
        ||||||||||||||| ||| |||||||||||| |||||||||| ||||
seq2  -TAACACATGTACACAC-AGC-ACATTAAATGGA-CCAACAGTGT-TGTG  1033

seq1  TGTG  1054
      ||||
seq2  TGTG  1037