BAC Information

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BAC

Clone NameB6Ng01-047A21
Chromosome19 (Build37)
Map Location 11,650,625 - 11,651,768
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454
Downstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A21.bB6Ng01-047A21.g
ACCDH872025DH872026
length1,1151,227
definitionDH872025|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A21, 5' end.DH872026|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacacttggaagtaaattagagatcaaagttgtacaatgaatgt
cagagttagttacgttatttgctcagtgcttgtcttactagaacacacac
atgagcagaaaatatagcagctagagaaaacaggaaagaaaactaaccat
tattatagtggctgataaatgcatcatgagcaaaaacatgtaacaataac
aacacccccacaatacatatttctttggaaatatttagttttaattatgc
atataagtgtgtgactttgtgcaggtatgtgctattggagtccagaagag
ggtctcagacacttcctgcctctacacttgagctggagttacaggcaatt
gtgagcattctgatgagtagtgttgggactcaggtcctctgtatgagtca
tttgcattcttaattgcaggaccatctatccagcccatgttaagttgcta
aagaatagaaaaaggatttcaaagttataaaatgttaccatctctttagc
aacttaacatttggctttagcttttcttttacaaaattttgattacattt
ttcaaaaacaaacaaacaaaaagaatgttaaaaagagagggggataggct
actccagtcttatcctatgagcttagtgttctgatacagaaacatcggat
gaaattagagctatagtgcccctcaacagaggaatggatacagaaaatgt
ggtacatctacacaatggagtactactcagctattaaaaagaatgaattt
atgaaattcctagccaaatggatggacctggagggcatcatcctgagtga
ggtaacacattcacaaaggaactcacacaatatgtactcactgataagtg
gatattagcccaaacctaggatacccagatatagatatatttcctaaaca
catgaactcagaaaatgaagactgagtgtggacactatactcctccttag
aagtgggaacaaacacccttgagagtaagagacaagtttggagctgagat
gaaagatgaccatgtagagactaccttatccaggatcacccatatcagca
ttcaacgctgacccatgctaaactagcaagattttatcgagacccgaggt
agctgttctctgtga
gaattcctcttaaagagatagcccctctggctatctatcccttgcttcag
ggaagatgaatggggatgagagccctgctctgctcaactccttcatgcct
tcaaaaccagtaccacctgggtgacccttacacattaccaagtccagcca
cagcacaaggtacaactttggctatatctggaacacagccactgtgctct
cagaaaacacttcccagaagatgtcacctcaatgatgctggtctcttctt
aatcaccgctaatttcttagctccagctaaccagcatcaatagtcccagt
aatgcaaagtttttgctttggtagttctggtatcttgttaatcacagctg
attcttcagccccagctaaccagaaccacagaatcttcacaatcaaaaca
gcaatgtccctgaaaagagtctttaattttccctctgaaatttcacaagc
caggcctctatcttctgcactgttctcaacattatcttccaagctcctac
aaaacatctgacagagctcttaacaacgaatggatcttcaagcccaaagt
tccaaagtccttccacagtcctccccaaaacatggtcaggttgtcacagg
aataccccactatgctggtaccaatttgtcttagtcagggtctctattcc
tgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttattc
ggcttacacttccatactgctgttcatcaccaaggaagtcaggactggaa
ctcaagcatgtcagaaagcagagccgatgcagaggccatggcggcttgtt
atagtgtgtgttgtgtgtttgacacatgtgttaggtgcagagtgtgcggg
cccgcactttcgccatggtagcataggcttttgctgcagtggagcgggac
aatctcttagattcggtttgccgctctaaagaaattatgctgcgtatgcc
gtggggtgcaagctaagcactgcacagaggatagcttgctgttggcatcc
tgtgaagcacgtctgattgctgaggttcatttctagttcccttccctcag
aaaaacgacacggagctgcagaacctcttggtgatgaagccaagggatgt
tgtgtagcctatgctgcaactggggatcaaccttatctcaccatgagcgt
tgttgcacaatagactggccaaggatatacacactcggcctttgagtact
gctcgagacataacaaatctcctccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11650625_11651768
seq2: B6Ng01-047A21.b_44_1158

seq1  GAATTCTACACTTGGAAGTAAATTAGAGATCAAAGTTGTACAATGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTTGGAAGTAAATTAGAGATCAAAGTTGTACAATGAATGT  50

seq1  CAGAGTTAGTTACGTTATTTGCTCAGTGCTTGTCTTACTAGAACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGTTACGTTATTTGCTCAGTGCTTGTCTTACTAGAACACACAC  100

seq1  ATGAGCAGAAAATATAGCAGCTAGAGAAAACAGGAAAGAAAACTAACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGAAAATATAGCAGCTAGAGAAAACAGGAAAGAAAACTAACCAT  150

seq1  TATTATAGTGGCTGATAAATGCATCATGAGCAAAAACATGTAACAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGTGGCTGATAAATGCATCATGAGCAAAAACATGTAACAATAAC  200

seq1  AACACCCCCACAATACATATTTCTTTGGAAATATTTAGTTTTAATTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCCCACAATACATATTTCTTTGGAAATATTTAGTTTTAATTATGC  250

seq1  ATATAAGTGTGTGACTTTGTGCAGGTATGTGCTATTGGAGTCCAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTGTGTGACTTTGTGCAGGTATGTGCTATTGGAGTCCAGAAGAG  300

seq1  GGTCTCAGACACTTCCTGCCTCTACACTTGAGCTGGAGTTACAGGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGACACTTCCTGCCTCTACACTTGAGCTGGAGTTACAGGCAATT  350

seq1  GTGAGCATTCTGATGAGTAGTGTTGGGACTCAGGTCCTCTGTATGAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATTCTGATGAGTAGTGTTGGGACTCAGGTCCTCTGTATGAGTCA  400

seq1  TTTGCATTCTTAATTGCAGGACCATCTATCCAGCCCATGTTAAGTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCTTAATTGCAGGACCATCTATCCAGCCCATGTTAAGTTGCTA  450

seq1  AAGAATAGAAAAAGGATTTCAAAGTTATAAAATGTTACCATCTCTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGAAAAAGGATTTCAAAGTTATAAAATGTTACCATCTCTTTAGC  500

seq1  AACTTAACATTTGGCTTTAGCTTTTCTTTTACAAAATTTTGATTACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACATTTGGCTTTAGCTTTTCTTTTACAAAATTTTGATTACATTT  550

seq1  TTCAAAAACAAACAAACAAAAAGAATGTTAAAAAGAGAGGGGGATAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACAAACAAACAAAAAGAATGTTAAAAAGAGAGGGGGATAGGCT  600

seq1  ACTCCAGTCTTATCCTATGAGCTTAGTGTTCTGATACAGAAACATCGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCTTATCCTATGAGCTTAGTGTTCTGATACAGAAACATCGGAT  650

seq1  GAAATTAGAGCTATAGTGCCCCTCAACAGAGGAATGGATACAGAAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGAGCTATAGTGCCCCTCAACAGAGGAATGGATACAGAAAATGT  700

seq1  GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT  750

seq1  ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA  800

seq1  GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG  850

seq1  GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTCCTA  900
      ||||||||||| ||||||||||||||| |||||| |||||| ||||||||
seq2  GATATTAGCCC-AAACCTAGGATACCC-AGATAT-AGATAT-ATTTCCTA  896

seq1  AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATACCC  950
      |||||||| ||||||   ||||||||||||| |||||||||||||||| |
seq2  AACACATG-AACTCA--GAAAATGAAGACTG-AGTGTGGACACTATACTC  942

seq1  CTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAA  1000
      |||||||||||||||||| |||||||||||  || |     |||||| ||
seq2  CTCCTTAGAAGTGGGAAC-AAACACCCTTGAGAGTA-----AGAGAC-AA  985

seq1  GTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTACCTTATCCAG  1050
      ||||||||||||||||||| ||| ||||||||||||||||||||||||| 
seq2  GTTTGGAGCTGAGATGAAA-GAT-GACCATGTAGAGACTACCTTATCCA-  1032

seq1  GGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTA  1100
      |||||   ||||| |||||||| | ||||||||| ||| ||| || ||||
seq2  GGATC--ACCCAT-ATCAGCATTC-AACGCTGAC-CCA-TGC-TAAACTA  1075

seq1  GCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCT-TGTGA  1144
      |||||||||||||||   ||||| || |||||||| ||| |||||
seq2  GCAAGATTTTATCGA---GACCC-GAGGTAGCTGT-TCTCTGTGA  1115