BAC Information

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BAC

Clone NameB6Ng01-047B03
Chromosome19 (Build37)
Map Location 44,379,940 - 44,560,079
singlet/doubletdoublet
Overlap geneScd2, Scd4, Scd1
Upstream geneLOC545291, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047B03.bB6Ng01-047B03.g
ACCDH872032DH872033
length1,1481,090
definitionDH872032|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B03, 5' end.DH872033|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,558,923 - 44,560,079)(44,379,940 - 44,381,053)
sequence
gaattctcatctaaaatgtgctcttaagttttgaattttttctttttaac
cagagtgtttacttactagtttattgcctcctgggttgtatggaaactct
tgcttccccatctgtactcatttgttcttcagtgtatactgaatctgaag
ttgtccctttgagggagaggcctcgggaagttagactgcaaggcaggatg
ccttataacagcatcagtgtgctagcaccaaacagaagtccccttggggt
taggcacagccacgccttcaggtgactgcaatcctggctagcattatcca
ctgtgatttcatgagaacctctgagctaaggccaccctagactgccctaa
tcccatcccataaaaactgggacagacacagatatttattattggattat
tccattacgtttcagagtgctttgttatgtacctgtggataattaataca
aggaggtttgcagatatcgcatcagattcaagatgttcacatctaagcct
agcattacaaaaaccgtctcttaatgaattggggctagagagatagctcg
gtgattgaaagcagttgcttttgcagaggacccaggttcaattcccagca
ccaatatgatggttcacaagtgtctgaaacaccaattccaggggatctgt
ttctgtctggaggcatagatgtacacatagaaaaatcacccatatacata
aaataaaatgattttaaaaattaaaataaaaaagaattacatttttgttt
tattcagttttctcatggagtgaattatctctttaatatgtaaattgatg
aattatattggactgttccaatgttaaagcaagtgttggctggaattaaa
aaccatttacatcatcaggcctgtgcacaaggtcttctacccactgggcc
atcttgccagccctcaactatctacatttttaaagactatttacatatct
attgttctatgtcctagcttctcactcatgcccactgctgctttgtgttg
ggtgtttgattgtcactgtctgtctgtcagcttctgatgtctgctgtgtg
tctgcagcttctgttccctcttatggaacctctggagagtcactcttaaa
gggaatggggtgattttggttcaggtttagcgctgccattacacttgg
gaattcttgggcgaatccaaggtatttgctgagctgtggccctattctat
tccttggatatgccttttgagtgatttcagttccgctggttatggtgccc
acttaaacaaatgtgaaaaataaaagcagctctcttcttagcctgccccg
tggatctgaaccatgctgtggctaaggaccccgtaaaataacatctgtcg
ttaagggtgtaccagctcactaagaaacactgctatcaagatttttaaag
ctcaaaccaagtgacacttttaataagagactaagatctgattgagggag
ttttctaacagtccttgcctcgtggacacgctaaagtttgacttgggtgc
cttacctcttttctaaccagtgttgctcgtgagcctgtggcgctcgcttg
ctcgctcgctcgctcgctccgtggattccttaaaaccagagagcctgtaa
gtgtggcaagatcaaaactggcctggctggagggttagctggacatggat
ctgcaggattgcctctggggacctcgttttgggaacttttcttggggctg
ttttgctcaagtgcccgtagctgatggatgggtgaagtaattttgaacgt
acgcgatttgtaggttttgttatttgttttaagatttaaaagctggttat
aggattttaagtgaaagcttttcttcctggtttgctagtgttcttgagtg
tcttctttagttgaaataggttagtaggaaatttaagaaagtggtggccg
tgttacactggtggtgaaggccagggccgcctaccaactctcagtttttt
gtaacagtcccactctgacgataatgagttcactccttggataacgatgt
taatgagggaagagccttcccgacctgacctaatcagctcttactggacc
cagctgtcacactgtgcattgggatttagtttccacccatgactatggac
agattcaaacgtagcactgggcatttcgcctacatactgtgactcagtat
tctgtgaactggatatattcctgactactccacgggtaggtgtggactga
aaatgctctttatacatttggggatctctgcgaggatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44558923_44560079
seq2: B6Ng01-047B03.b_44_1191 (reverse)

seq1  CCAAGTG-ATTGACAGCGCTAAACCATGAACCAAAATCAACCCATTCCCC  49
      ||||||| | || |||||||||||| ||||||||||||| ||||||||| 
seq2  CCAAGTGTAATGGCAGCGCTAAACC-TGAACCAAAATCACCCCATTCCCT  49

seq1  TTTAAAGTGACTTCCTCCAG-TGTTCCATAAGAGGG-ACAGAAAGCTGAC  97
      || | |||||||  ||||||  |||||||||||||| |||| |||||| |
seq2  TTAAGAGTGACT--CTCCAGAGGTTCCATAAGAGGGAACAG-AAGCTG-C  95

seq1  AGACACACAGCAGACATTCAGAAAGCTGACAGACAGACAGTGGACATTCA  147
      |||||||||||||||| |||| ||||||||||||||||||| |||| || 
seq2  AGACACACAGCAGACA-TCAG-AAGCTGACAGACAGACAGT-GACAATC-  141

seq1  AAACACCCAAACACAAAGGCAGCAGTTGGGCATGAGTGAG-AGCTAGGAC  196
      |||||||| |||||||| ||||||| |||||||||||||| |||||||||
seq2  AAACACCC-AACACAAA-GCAGCAG-TGGGCATGAGTGAGAAGCTAGGAC  188

seq1  ATAGAACAATAGAATATGTAAATAGTCTTTAAAAATGTAGATAGTTGAGG  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAATAG-ATATGTAAATAGTCTTTAAAAATGTAGATAGTTGAGG  237

seq1  GCTGGCAAGATGGCCCAGTGGGTAGAGACCCTTGTGCACAGGCCTGATGA  296
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  GCTGGCAAGATGGCCCAGTGGGTAGAAGACCTTGTGCACAGGCCTGATGA  287

seq1  TGTGAATTGTTTTTAATTCCAGCCAACACTTGCTTTAACATTGGAACAGT  346
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGTTTTTAATTCCAGCCAACACTTGCTTTAACATTGGAACAGT  337

seq1  CCAATATAATTCATCAATTTACATATTAAAGAGATAATTCACTCCATGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAATTCATCAATTTACATATTAAAGAGATAATTCACTCCATGAG  387

seq1  AAAACTGAATAAAACAAAAATGTAATTCTTTTTTATTTTAATTTTTAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATAAAACAAAAATGTAATTCTTTTTTATTTTAATTTTTAAAA  437

seq1  TCATTTTATTTTATGTATATGGGTGATTTTTCTATGTGTACATCTATGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATTTTATGTATATGGGTGATTTTTCTATGTGTACATCTATGCC  487

seq1  TCCAGACAGAAACAGATCCCCTGGAATTGGTGTTTCAGACACTTGTGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAGAAACAGATCCCCTGGAATTGGTGTTTCAGACACTTGTGAAC  537

seq1  CATCATATTGGTGCTGGGAATTGAACCTGGGTCCTCTGCAAAAGCAACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATTGGTGCTGGGAATTGAACCTGGGTCCTCTGCAAAAGCAACTG  587

seq1  CTTTCAATCACCGAGCTATCTCTCTAGCCCCAATTCATTAAGAGACGGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATCACCGAGCTATCTCTCTAGCCCCAATTCATTAAGAGACGGTT  637

seq1  TTTGTAATGCTAGGCTTAGATGTGAACATCTTGAATCTGATGCGATATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGCTAGGCTTAGATGTGAACATCTTGAATCTGATGCGATATCT  687

seq1  GCAAACCTCCTTGTATTAATTATCCACAGGTACATAACAAAGCACTCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTCCTTGTATTAATTATCCACAGGTACATAACAAAGCACTCTGA  737

seq1  AACGTAATGGAATAATCCAATAATAAATATCTGTGTCTGTCCCAGTTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAATGGAATAATCCAATAATAAATATCTGTGTCTGTCCCAGTTTTT  787

seq1  ATGGGATGGGATTAGGGCAGTCTAGGGTGGCCTTAGCTCAGAGGTTCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGGGATTAGGGCAGTCTAGGGTGGCCTTAGCTCAGAGGTTCTCA  837

seq1  TGAAATCACAGTGGATAATGCTAGCCAGGATTGCAGTCACCTGAAGGCGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCACAGTGGATAATGCTAGCCAGGATTGCAGTCACCTGAAGGCGT  887

seq1  GGCTGTGCCTAACCCCAAGGGGACTTCTGTTTGGTGCTAGCACACTGATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCCTAACCCCAAGGGGACTTCTGTTTGGTGCTAGCACACTGATG  937

seq1  CTGTTATAAGGCATCCTGCCTTGCAGTCTAACTTCCCGAGGCCTCTCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAAGGCATCCTGCCTTGCAGTCTAACTTCCCGAGGCCTCTCCCT  987

seq1  CAAAGGGACAACTTCAGATTCAGTATACACTGAAGAACAAATGAGTACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGACAACTTCAGATTCAGTATACACTGAAGAACAAATGAGTACAG  1037

seq1  ATGGGGAAGCAAGAGTTTCCATACAACCCAGGAGGCAATAAACTAGTAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAGCAAGAGTTTCCATACAACCCAGGAGGCAATAAACTAGTAAG  1087

seq1  TAAACACTCTGGTTAAAAAGAAAAAATTCAAAACTTAAGAGCACATTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTCTGGTTAAAAAGAAAAAATTCAAAACTTAAGAGCACATTTTA  1137

seq1  GATGAGAATTC  1157
      |||||||||||
seq2  GATGAGAATTC  1148

seq1: chr19_44379940_44381053
seq2: B6Ng01-047B03.g_68_1157

seq1  GAATTCTTGGGCGAATCCAAGGTATTTGCTGAGCTGTGGCCCTATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCGAATCCAAGGTATTTGCTGAGCTGTGGCCCTATTCTAT  50

seq1  TCCTTGGATATGCCTTTTGAGTGATTTCAGTTCCGCTGGTTATGGTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATATGCCTTTTGAGTGATTTCAGTTCCGCTGGTTATGGTGCCC  100

seq1  ACTTAAACAAATGTGAAAAATAAAAGCAGCTCTCTTCTTAGCCTGCCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACAAATGTGAAAAATAAAAGCAGCTCTCTTCTTAGCCTGCCCCG  150

seq1  TGGATCTGAACCATGCTGTGGCTAAGGACCCCGTAAAATAACATCTGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGAACCATGCTGTGGCTAAGGACCCCGTAAAATAACATCTGTCG  200

seq1  TTAAGGGTGTACCAGCTCACTAAGAAACACTGCTATCAAGATTTTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTGTACCAGCTCACTAAGAAACACTGCTATCAAGATTTTTAAAG  250

seq1  CTCAAACCAAGTGACACTTTTAATAAGAGACTAAGATCTGATTGAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCAAGTGACACTTTTAATAAGAGACTAAGATCTGATTGAGGGAG  300

seq1  TTTTCTAACAGTCCTTGCCTCGTGGACACGCTAAAGTTTGACTTGGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAACAGTCCTTGCCTCGTGGACACGCTAAAGTTTGACTTGGGTGC  350

seq1  CTTACCTCTTTTCTAACCAGTGTTGCTCGTGAGCCTGTGGCGCTCGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCTTTTCTAACCAGTGTTGCTCGTGAGCCTGTGGCGCTCGCTTG  400

seq1  CTCGCTCGCTCGCTCGCTCCGTGGATTCCTTAAAACCAGAGAGCCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCGCTCGCTCGCTCCGTGGATTCCTTAAAACCAGAGAGCCTGTAA  450

seq1  GTGTGGCAAGATCAAAACTGGCCTGGCTGGAGGGTTAGCTGGACATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCAAGATCAAAACTGGCCTGGCTGGAGGGTTAGCTGGACATGGAT  500

seq1  CTGCAGGATTGCCTCTGGGGACCTCGTTTTGGGAACTTTTCTTGGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGATTGCCTCTGGGGACCTCGTTTTGGGAACTTTTCTTGGGGCTG  550

seq1  TTTTGCTCAAGTGCCCGTAGCTGATGGATGGGTGAAGTAATTTTGAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCAAGTGCCCGTAGCTGATGGATGGGTGAAGTAATTTTGAACGT  600

seq1  ACGCGATTTGTAGGTTTTGTTATTTGTTTTAAGATTTAAAAGCTGGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGATTTGTAGGTTTTGTTATTTGTTTTAAGATTTAAAAGCTGGTTAT  650

seq1  AGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGCTAGTGTTCTTGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGCTAGTGTTCTTGAGTG  700

seq1  TCTTCTTTAGTTGAAATAGGTTAGTAGGAAATTTAAGAAAGTGGTGGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAGTTGAAATAGGTTAGTAGGAAATTTAAGAAAGTGGTGGCCG  750

seq1  TGTTACACTGGTGGTGAAGGCCAGGGCCGCCTACCAACTCTCAGTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACTGGTGGTGAAGGCCAGGGCCGCCTACCAACTCTCAGTTTTTT  800

seq1  GTAACAGTCCCACTCTGACGATAATGAGTTCACTCCTTGGATAAGGATGT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTAACAGTCCCACTCTGACGATAATGAGTTCACTCCTTGGATAACGATGT  850

seq1  TAATGAGGGAAGAGCCTTCCCGACCTGACCTAATCAGCTCTTACTGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGGAAGAGCCTTCCCGACCTGACCTAATCAGCTCTTACTGGACC  900

seq1  CAGCTGTCAACACTGTTGCATTGGGGATTTAAGTTTCCAACCCATGACTT  950
      |||||||| |||||| |||||| ||||||| ||||||| ||||||||| |
seq2  CAGCTGTC-ACACTG-TGCATT-GGGATTT-AGTTTCC-ACCCATGAC-T  944

seq1  ATGGGACAGATTCAAACCGTAGCACTGGGCATTTCGCCTAACAATACTGT  1000
      || ||||||||||||| |||||||||||||||||||||||   |||||||
seq2  AT-GGACAGATTCAAA-CGTAGCACTGGGCATTTCGCCTA--CATACTGT  990

seq1  GACTCAGTATTCTGTGAAACTGGGATAATATTCCTGACCTACCTCCACGG  1050
      |||||||||||||||| |||| |||| |||||||||| ||| ||||||||
seq2  GACTCAGTATTCTGTG-AACT-GGAT-ATATTCCTGA-CTA-CTCCACGG  1035

seq1  GTAGGTGTGAGCATGAGAAAATGCTCTTTATAAAACATTTGGGGATCCTC  1100
      |||||||||  |    |||||||||||||||   |||||||||||| |||
seq2  GTAGGTGTGGAC---TGAAAATGCTCTTTAT---ACATTTGGGGAT-CTC  1078

seq1  TGCAGAGGAGTATT  1114
      ||| ||||| ||||
seq2  TGC-GAGGA-TATT  1090