BAC Information

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BAC

Clone NameB6Ng01-047E22
Chromosome19 (Build37)19 (Build37)
Map Location 39,504,907 - 39,505,84439,599,583 - 39,599,788
singlet/doubletsingletsinglet
Overlap geneCyp2c38
Upstream geneLOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
Downstream geneCyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047E22.bB6Ng01-047E22.g
ACCDH872207DH872208
length944832
definitionDH872207|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E22, 5' end.DH872208|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,504,907 - 39,505,844)(39,599,583 - 39,599,788)
sequence
gaattcaatcacgctatataatatgagaacatgttaaaatcagaatgaaa
gtcagagaaggttttctgttgagggtatggatttgtatatatttccacac
aaaaacataggtataaatactatcaaaactaaataagctcaagggttagc
ataggaggtcttcaggaaaccttaacctctgactcaaaaagtagaaagaa
gagagcctgacaatccactgccttccccctaaaagccaagaaagcctaca
taaaaaacacttaccacctaaccactgagagctgcgagctggactctgga
ctcctacaatccaaagcctcagccataaagaagaacaatagacctatgaa
caggatattaagacagaatatgctgaataatgcatcttgcatgaccaagt
tggacaagccgcaggatcacagagctaggagcagagattaagaagcttca
ccaactttggtacctggtatgtgtctagaaatttgtatatttcatccaga
ttttccagttttgttgaatattagcttttgtagtggaatatgatggtttt
tcttaatttctttggtttctgtaagtctcccttttcaactctgattttgt
aaatttagatactgtctctgtgtcctctggttagtctggctaagggtata
tctatctttttgattttctcaaagaaccagctcttggttttgtggattct
ttgtacagttctttttatttctgtttggttgatttcatccctgagtttga
gtatttcctgccatttacttctctggggtgtatgtacttctttttgttgt
agagatttaagtgtgcagtcaagttgcttgtgtatgctttctttagttct
cctttggaggcacccagagctatgaattttcttctagcagtgtttccatg
catctgatatttcggtatgtcatgcttcatttcatatctaaacg
gaattcctgatttctccaatacatttgccatgaaagggtgttgtatttgg
ttaaatgctttttcagcatctagtgagatgattgtgtgatttttttaaat
gcaatttgagtctgctgatatactgggttaccttaatggatttttatata
ttcaaccaacattgcatccctggaatgaagcctacttgctcatgatgaat
gatcatttttatgtgtccttggattcagtttgctagaactttattgagta
tttttgcatcgatattcatacgtgaaattggtctgaaatcttgtttcttt
gttgggtctttgtgtgctttagcgatcagagtaattgtgttattatagaa
tgaattaggtagggtttttttttccttttctattttatagaatagcttga
ggagtgttggtattagctattatttgaaggtctgttagaattctgcacta
aagccatctggtcctcggatttatttggttgggatttttaaaatgatcgc
ctgtatttccttacggatatcgaaatgtttagatagtttacctgcttttg
atttaactttggtacatgatatctgtctggaaaaatgatccattttacct
agatgttctagctttttttcttttgagtataggtttttgtattagaatct
gatgatgttttggatttcctcggtttctggtgttatgcctcccttttcat
ttttgagggtttttaatgatatttttgagttttagtataactagattggt
tggtgctgaatcataaactttatagatgacatatgatgaattatcaggat
cgcacatggcttactcatgcttagatatgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39504907_39505844
seq2: B6Ng01-047E22.b_42_973

seq1  GAATTCAATCACGCTATATAATATGAGAACATGTTAAAATCAGAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACGCTATATAATATGAGAACATGTTAAAATCAGAATGAAA  50

seq1  GTCAGAGAAGGTTTTCTGTTGAGGGTATGGATTTGTATATATTTCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAAGGTTTTCTGTTGAGGGTATGGATTTGTATATATTTCCACAC  100

seq1  AAAAACATAGGTATAAATACTATCAAAACTAAATAAGCTCAAGGGTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAGGTATAAATACTATCAAAACTAAATAAGCTCAAGGGTTAGC  150

seq1  ATAGGAGGTCTTCAGGAAACCTTAACCTCTGACTCAAAAAGTAGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGTCTTCAGGAAACCTTAACCTCTGACTCAAAAAGTAGAAAGAA  200

seq1  GAGAGCCTGACAATCCACTGCCTTCCCCCTAAAAGCCAAGAAAGCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGACAATCCACTGCCTTCCCCCTAAAAGCCAAGAAAGCCTACA  250

seq1  TAAAAAACACTTACCACCTAACCACTGAGAGCTGCGAGCTGGACTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACACTTACCACCTAACCACTGAGAGCTGCGAGCTGGACTCTGGA  300

seq1  CTCCTACAATCCAAAGCCTCAGCCATAAAGAAGAACAATAGACCTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAATCCAAAGCCTCAGCCATAAAGAAGAACAATAGACCTATGAA  350

seq1  CAGGATATTAAGACAGAATATGCTGAATAATGCATCTTGCATGACCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATTAAGACAGAATATGCTGAATAATGCATCTTGCATGACCAAGT  400

seq1  TGGACAAGCCGCAGGATCACAGAGCTAGGAGCAGAGATTAAGAAGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGCCGCAGGATCACAGAGCTAGGAGCAGAGATTAAGAAGCTTCA  450

seq1  CCAACTTTGGTACCTGGTATGTGTCTAGAAATTTGTATATTTCATCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTGGTACCTGGTATGTGTCTAGAAATTTGTATATTTCATCCAGA  500

seq1  TTTTCCAGTTTTGTTGAATATTAGCTTTTGTAGTGGAATATGATGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGTTTTGTTGAATATTAGCTTTTGTAGTGGAATATGATGGTTTT  550

seq1  TCTTAATTTCTTTGGTTTCTGTAAGTCTCCCTTTTCAACTCTGATTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCTTTGGTTTCTGTAAGTCTCCCTTTTCAACTCTGATTTTGT  600

seq1  AAATTTAGATACTGTCTCTGTGTCCTCTGGTTAGTCTGGCTAAGGGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGATACTGTCTCTGTGTCCTCTGGTTAGTCTGGCTAAGGGTATA  650

seq1  TCTATCTTTTTGATTTTCTCAAAGAACCAGCTCTTGGTTTTGTGGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTTTGATTTTCTCAAAGAACCAGCTCTTGGTTTTGTGGATTCT  700

seq1  TTGTACAGTTCTTTTTATTTCTGTTTGGTTGATTTCATCCCTGAGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGTTCTTTTTATTTCTGTTTGGTTGATTTCATCCCTGAGTTTGA  750

seq1  GTATTTCCTGCCATTTACTTCTCTGGGGTGTATGTACTTCTTTTTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCTGCCATTTACTTCTCTGGGGTGTATGTACTTCTTTTTGTTGT  800

seq1  AGAGATTTAAGGTGTGCAGTCAAGTTGCTTGTGTATGCTTTCTTTAGTTT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AGAGATTTAA-GTGTGCAGTCAAGTTGCTTGTGTATGCTTTCTTTAGTTC  849

seq1  CTCTTTGGAGGCACCCAGAGCTATGAATTTTCTTCTTAGCAGTGTTTCCA  900
        ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTTTGGAGGCACCCAGAGCTATGAATTTTCTTC-TAGCAGTGTTTCCA  898

seq1  TTGCATCTGATAATTTCGGGTATGTCATGCCTTCATTT  938
       |||||||||| ||||| ||||||||||| ||||||||
seq2  -TGCATCTGAT-ATTTC-GGTATGTCATG-CTTCATTT  932

seq1: chr19_39599583_39599788
seq2: B6Ng01-047E22.g_392_899

seq1  ATCAGAGTAATTGTGTTATTATAGAATGAATTAGGTAGGG-TTTTTTTTC  49
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAGAGTAATTGTGTTATTATAGAATGAATTAGGTAGGGTTTTTTTTTC  50

seq1  CTTTT-TATTCTATAGAATAGCTTGAGGAGTGTTGGTATTAGCTATTATT  98
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATTTTATAGAATAGCTTGAGGAGTGTTGGTATTAGCTATTATT  100

seq1  TGA-----------------------------------------------  101
      |||                                               
seq2  TGAAGGTCTGTTAGAATTCTGCACTAAAGCCATCTGGTCCTCGGATTTAT  150

seq1  --------------------------------------------------  101
                                                        
seq2  TTGGTTGGGATTTTTAAAATGATCGCCTGTATTTCCTTACGGATATCGAA  200

seq1  --------------------------------------------------  101
                                                        
seq2  ATGTTTAGATAGTTTACCTGCTTTTGATTTAACTTTGGTACATGATATCT  250

seq1  --------------------------------------------------  101
                                                        
seq2  GTCTGGAAAAATGATCCATTTTACCTAGATGTTCTAGCTTTTTTTCTTTT  300

seq1  -----------------------------------------------GGT  104
                                                     |||
seq2  GAGTATAGGTTTTTGTATTAGAATCTGATGATGTTTTGGATTTCCTCGGT  350

seq1  TTC-----------------------------------------------  107
      |||                                               
seq2  TTCTGGTGTTATGCCTCCCTTTTCATTTTTGAGGGTTTTTAATGATATTT  400

seq1  ----------ATATAACTAGATTGGGTGGTACTGAATCATAAACTTTATA  147
                 |||||||||||||| |||| |||||||||||||||||||
seq2  TTGAGTTTTAGTATAACTAGATTGGTTGGTGCTGAATCATAAACTTTATA  450

seq1  GATGACATAATGATGAATTATCAGGATTGCACATGGCTTACTCATGCTTA  197
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  GATGACAT-ATGATGAATTATCAGGATCGCACATGGCTTACTCATGCTTA  499

seq1  GATATGAAG  206
      |||||||||
seq2  GATATGAAG  508