BAC Information

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BAC

Clone NameB6Ng01-048B02
Chromosome19 (Build37)
Map Location 21,902,570 - 21,903,531
singlet/doubletsinglet
Overlap geneTmem2
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048B02.bB6Ng01-048B02.g
ACCDH872739DH872740
length1,168945
definitionDH872739|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B02, 5' end.DH872740|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaactcacttaaagaaatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcga
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacaccaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagccctatcagaattacaccaggatttttccacca
gagacttatgaaagccagaagagcctggtcagatgttatacagaccacta
agaagaacataaatggcagccccgggctactattacccagccaaatctct
ccattaccctagaatgggaggaacccaaagtattccccgaccaaacctac
attcccccattatcctctcccccaaatccggcccttccaaagataattac
cagaaaaaaaatcataccaaggacggggaaccctctccctataaaaaacc
aagaagaatatcctctcacaaacctaaaagaagaacgaccaccagaacag
aatgtgccactctttaacaaccaaaaataccgggaggccaccattacctt
tccttaaattctctttaaatcaatgggactcatttcccctattaaaggga
catagactaactagagct
gaattctcaggacctcagttccaaggtaacgcccactgtgacccatggag
agtcatcttattgtgggaatgctccctctgggtgtgcgtcaggatgaggc
aggggagcaggacagacagaccgtcggttttcctggtgtcctgtgctgga
tccctgaagtagcgagcacaccatactgtgtagctttcgcgttgaatcac
gagtactgctagaaaacgaacttcctgttgtgtatgctgtgatgctgaag
cctgagcccaaacccgcggacggacgtttgaggcgcgtgctctgtgtgcc
taaatgtatccccagccatgcttaagaatctcccgtcactaacgtttatc
aaatgctcgcctaggcctgttctccgtagctcaccttcacttgaccctct
caaaatgcaggcaggtccgtcctgcaagctcctgctttataaatgagagt
ttgttaagtaagggaggtgggatttgaacccactgagtttggcttcagct
ctgcctgcttcctgattatgctgtaactgtgcattttacagaaacgcagg
ttgtcagccttaggggccgtagtgaggctctgagcagcatattttctggg
ttttgttttttgttttataaatttttgacagctagttttattttcaaaaa
tgctttttgtatcttcgctaaggaagttaaaagaaacaacaaaaactcgc
ccctgaatttatgagctcaggttttatttgactggtgtttataagtctcg
tctggttatgttaagagtcttattgggttttgtgtggccagagtctatgt
ataaagttatagttttagtagacggtcatttttcttggcagtctaaacat
ttttgtggcaaatctctgcaagggcgggtcacggctcttagaatcctcga
tacctcttaattaacatttaaagctttataggtgaagaatcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21902570_21903531
seq2: B6Ng01-048B02.g_70_1008

seq1  GAATTCTCAGGACCTCAGTTCCAAGGTAACGCCCACTGTGACCCATGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGACCTCAGTTCCAAGGTAACGCCCACTGTGACCCATGGAG  50

seq1  AGTCATCTTATTGTGGGAATGCTCCCTCTGGGTGTGCGTCAGGATGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTTATTGTGGGAATGCTCCCTCTGGGTGTGCGTCAGGATGAGGC  100

seq1  AGGGGAGCAGGACAGACAGACCGTCGGTTTTCCTGGTGTCCTGTGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGCAGGACAGACAGACCGTCGGTTTTCCTGGTGTCCTGTGCTGGA  150

seq1  TCCCTGAAGTAGCGAGCACACCATACTGTGTAGCTTTCGCGTTGAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGTAGCGAGCACACCATACTGTGTAGCTTTCGCGTTGAATCAC  200

seq1  GAGTACTGCTAGAAAACGAACTTCCTGTTGTGTATGCTGTGATGCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGCTAGAAAACGAACTTCCTGTTGTGTATGCTGTGATGCTGAAG  250

seq1  CCTGAGCCCAAACCCGCGGACGGACGTTTGAGGCGCGTGCTCTGTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCCAAACCCGCGGACGGACGTTTGAGGCGCGTGCTCTGTGTGCC  300

seq1  TAAATGTATCCCCAGCCATGCTTAAGAATCTCCCGTCACTAACGTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATCCCCAGCCATGCTTAAGAATCTCCCGTCACTAACGTTTATC  350

seq1  AAATGCTCGCCTAGGCCTGTTCTCCGTAGCTCACCTTCACTTGACCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCGCCTAGGCCTGTTCTCCGTAGCTCACCTTCACTTGACCCTCT  400

seq1  CAAAATGCAGGCAGGTCCGTCCTGCAAGCTCCTGCTTTATAAATGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCAGGCAGGTCCGTCCTGCAAGCTCCTGCTTTATAAATGAGAGT  450

seq1  TTGTTAAGTAAGGGAGGTGGGATTTGAACCCACTGAGTTTGGCTTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGTAAGGGAGGTGGGATTTGAACCCACTGAGTTTGGCTTCAGCT  500

seq1  CTGCCTGCTTCCTGATTATGCTGTAACTGTGCATTTTACAGAAACGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTTCCTGATTATGCTGTAACTGTGCATTTTACAGAAACGCAGG  550

seq1  TTGTCAGCCTTAGGGGCCGTAGTGAGGCTCTGAGCAGCATA-TTTCTGGG  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTCAGCCTTAGGGGCCGTAGTGAGGCTCTGAGCAGCATATTTTCTGGG  600

seq1  TTTTG-TTTTTGTTTTATAAA-TTTTGACAGCTAGTTTTA-TTTCAAAAA  646
      ||||| ||||||||||||||| |||||||||||||||||| |||||||||
seq2  TTTTGTTTTTTGTTTTATAAATTTTTGACAGCTAGTTTTATTTTCAAAAA  650

seq1  TGCTTTTTGTATCTTCGCTAAGGAAGATTAAAGAAACAACAAAAACTCGC  696
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  TGCTTTTTGTATCTTCGCTAAGGAAGTTAAAAGAAACAACAAAAACTCGC  700

seq1  CCCTGAATTCATGAGCTCAGGTTTTATTTGACT-GTGTTTAT-AGTCTCG  744
      ||||||||| ||||||||||||||||||||||| |||||||| |||||||
seq2  CCCTGAATTTATGAGCTCAGGTTTTATTTGACTGGTGTTTATAAGTCTCG  750

seq1  TCTGGTTTATGTT-AGAGTCTTATTGG--TTTATGTGCCCAGAGTCTATG  791
      ||||| ||||||| |||||||||||||  ||| |||| ||||||||||||
seq2  TCTGG-TTATGTTAAGAGTCTTATTGGGTTTTGTGTGGCCAGAGTCTATG  799

seq1  TATAAAG-TATAGTTTTAATCAGACAGTTCATTTTTCTTGCTAGTCTAAA  840
      ||||||| |||||||||| | |||| | ||||||||||||  ||||||||
seq2  TATAAAGTTATAGTTTTAGT-AGAC-GGTCATTTTTCTTGGCAGTCTAAA  847

seq1  CATTTTTGTTGTCAAACTCTGCCAAGGTGCGGGTCAGCTGCTCTTAGAAA  890
      ||||||||| |  || ||||| ||||| |||||||| | |||||||| ||
seq2  CATTTTTGTGGCAAATCTCTG-CAAGG-GCGGGTCA-CGGCTCTTAG-AA  893

seq1  TCCTCCGAATTACC-CTTAATAAACACTTTAAAAGCTTTAATAGATGAAG  939
      |||| |||  |||| |||||| ||||  || |||||||| |||| |||||
seq2  TCCT-CGA--TACCTCTTAATTAACA--TTTAAAGCTTT-ATAGGTGAAG  937

seq1  AAACCTATTAAATAGGTGAAGAA  962
      ||                     
seq2  AA---------------------  939