BAC Information

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BAC

Clone NameB6Ng01-048E05
Chromosome19 (Build37)
Map Location 45,994,915 - 45,995,970
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream gene4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E05.bB6Ng01-048E05.g
ACCDH872875DH872876
length1,0711,065
definitionDH872875|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E05, 5' end.DH872876|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccggtggctcaggttccttttcctcccggttcagttctaggaccc
tttcctcttgccatgactctccttcctgagtttcctcctggcagcctccc
tctcttccttgttttctcttggcttctagaaattcctgctagtgaacatt
tgacgggtgaagctggcagtgacaagagatgcccaccaggaggcgccagt
gcctaagaagatgctgaagccctgtatggaggctcctgcctgcagaggct
gaagtcctgcgccctctaggactacacaaggagttccaggccagcgtggg
ctacaaaggaggagctaactcagtggccaagattgttgttgctgttgcag
agaacctgagttgggtttctagtatgcatgtctagtgctcacagttaact
ctaactttagttccagggaatctcagatgctcttcccacctctgagagga
catttgtatatatgtggtgtacacacacacacacacacacacacacaaat
aaaaagtaattttttaagatatctgtaacccaatttgcaaaaacacatga
aactcaagaagaacgaagaccaaagtgtggacactttgccccttcttaga
attgggaacaaaacacccatggaaggagttacagagacgaagtttggagc
tgagactaaaggatggaccatctagtgactgccatatccagggtttcatc
ccataatcagcctccaaacgaagacaccattgcatacactagcaagattg
tgctgataggaccctgatatagctgtctctagtgagactatgccggggcc
tagcaaacacataagtggatgctcacagtcagctattggatagatcacag
ggcccccaatggaggagctagagaaatacccaagagctaaagggatctgc
aaccctatagtggaacaacattatgactacagtaccccggagctcttgac
tctagctgcatatgtatcaaggatgactagtcgcatcactgaagaaaagc
tcattggactggcaactttatattgccctagtccaggggaacgcctaggt
caaatggtgtgggatggaaga
gaattccacggaaggggctgggctcctggcctgctatcttaccaagcccc
ccgacactaacactctctcttctgctcagcacagagagaagcaccccacc
cgagggtagccactcatcactgtaatcatctggagaaaactattatccca
tcaggtcacaaagccacgggacagcagcaagcaactgcctcaggggacag
gctttgctttcccaaacctccaatttagtcacacaaaagaaagggtggca
agctagcattaactgtgcccttagagaagagccacttcccgcctgcaggg
gtggcagtgactttactgggttaccaaatggatataaagaccgaagtaaa
cattgtaattttctgttttgtctctggcacagggggagtggtaccatcta
cacagtctgtaaacagtaataatgccagatgtaacaaaagaacagggctc
cccccatctctccgcccccatccatccccacccgcctaatgccattcctt
ctgagattactcatcttgaggaaacacagaggctccctatagtccatatg
ctgctaccaaatggaagggagtgagagtccaagtttgcactgatttcctc
cttgctgttacacaaagccagaatatttgagactcaagacatgtttggtt
gattttgttttttaagacaaggtatcactacatggcactggctggcctag
aattcactctgtatcccaggctggcctagaactcacagagatccacttgc
ctcttcctccagggctaggaattcagatctgtgccattatgcttggctaa
aaaattatatcccttcttgaatttttttttttctttttcctttttctcac
tgctaggaatcaaaccccagggccttacacttgctagggcaagcacttct
gtaccaagctaattattaagcctcaggatctcaaaaaatcattcaactgt
ttcttaaaggctgattcacagaacaaaaggacaggtcaggaagagggaac
caggaatgcaggctgtgaccacccaattagtgctgaagttctgactctca
acaaaccgaattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45994915_45995970
seq2: B6Ng01-048E05.g_68_1132

seq1  GAATTCCACGGAAGGGGCTGGGCTCCTGGCCTGCTATCTTACCAAGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAAGGGGCTGGGCTCCTGGCCTGCTATCTTACCAAGCCCC  50

seq1  CCGACACTAACACTCTCTCTTCTGCTCAGCACAGAGAGAAGCACCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACTAACACTCTCTCTTCTGCTCAGCACAGAGAGAAGCACCCCACC  100

seq1  CGAGGGTAGCCACTCATCACTGTAATCATCTGGAGAAAACTATTATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGTAGCCACTCATCACTGTAATCATCTGGAGAAAACTATTATCCCA  150

seq1  TCAGGTCACAAAGCCACGGGACAGCAGCAAGCAACTGCCTCAGGGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCACAAAGCCACGGGACAGCAGCAAGCAACTGCCTCAGGGGACAG  200

seq1  GCTTTGCTTTCCCAAACCTCCAATTTAGTCACACAAAAGAAAGGGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTCCCAAACCTCCAATTTAGTCACACAAAAGAAAGGGTGGCA  250

seq1  AGCTAGCATTAACTGTGCCCTTAGAGAAGAGCCACTTCCCGCCTGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATTAACTGTGCCCTTAGAGAAGAGCCACTTCCCGCCTGCAGGG  300

seq1  GTGGCAGTGACTTTACTGGGTTACCAAATGGATATAAAGACCGAAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTGACTTTACTGGGTTACCAAATGGATATAAAGACCGAAGTAAA  350

seq1  CATTGTAATTTTCTGTTTTGTCTCTGGCACAGGGGGAGTGGTACCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAATTTTCTGTTTTGTCTCTGGCACAGGGGGAGTGGTACCATCTA  400

seq1  CACAGTCTGTAAACAGTAATAATGCCAGATGTAACAAAAGAACAGGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTAAACAGTAATAATGCCAGATGTAACAAAAGAACAGGGCTC  450

seq1  CCCCCATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTT  500

seq1  CTGAGATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATG  550

seq1  CTGCTACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTC  600

seq1  CTTGCTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTT  650

seq1  GATTTTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAG  700

seq1  AATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGC  750

seq1  CTCTCCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCTAA  800
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTTCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCT-A  799

seq1  AAAAATTATATCCCTTCTTGAA-TTTTTTTTTTCTTTTTCCTTTTTTCTC  849
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AAAAATTATATCCCTTCTTGAATTTTTTTTTTTCTTTTTCC-TTTTTCTC  848

seq1  ACTGCTAGGGATCAAACCCCAGGGCCTTACACTTGCTA-GGCAAGCAC-T  897
      ||||||||| |||||||||||||||||||||||||||| ||||||||| |
seq2  ACTGCTAGGAATCAAACCCCAGGGCCTTACACTTGCTAGGGCAAGCACTT  898

seq1  CTGTACCAAGCTAATTATTAAGCCTCA-GAACTCAAAAAATCA-TCAACT  945
      ||||||||||||||||||||||||||| || |||||||||||| ||||||
seq2  CTGTACCAAGCTAATTATTAAGCCTCAGGATCTCAAAAAATCATTCAACT  948

seq1  GTTTC-TAAAGGCTGATACACAG-ACAAAAGGACAGGGCAAG-AGAGGGA  992
      ||||| ||||||||||| ||||| ||||||||||||| || | |||||||
seq2  GTTTCTTAAAGGCTGATTCACAGAACAAAAGGACAGGTCAGGAAGAGGGA  998

seq1  A-CAAGAAAGCAGGCGTGGACCACACAAT--ATGCTGAAGTCTAGACTCA  1039
      | || ||| ||||||   |||||| ||||   |||||||||   ||||| 
seq2  ACCAGGAATGCAGGCTGTGACCACCCAATTAGTGCTGAAGTTCTGACTCT  1048

seq1  AACAAAACCGAATTGTG  1056
       |  |||||||||||||
seq2  CAACAAACCGAATTGTG  1065