BAC Information

Click to search

BAC

Clone NameB6Ng01-049L08
Chromosome19 (Build37)
Map Location 59,352,438 - 59,513,113
singlet/doubletdoublet
Overlap geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L08.bB6Ng01-049L08.g
ACCDH873892DH873893
length9591,048
definitionDH873892|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L08, 5' end.DH873893|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,512,129 - 59,513,113)(59,352,438 - 59,353,509)
sequence
gaattctccatccatcatcccacagcctggcatcccgtttccaaacattt
ccttttaatatgctctttaacatgataagcaaatctaatagaatacatta
gtgtcacttgccagtgatggagtgtttcctcccgctgctgtcctccataa
gtttggggaagcttttttatgagctctatccctgacagccatcagttgtt
gaaaatatgacagtagtccccaggctaaccaaggccacatttgagatggt
agccttagaaagattgacagcagttctatctcaccacctcatgtgccgtt
gatatagaaactcaaaaggtgtgtgtgtctccaagtaatgggtccaggct
ctgtacacaagaggagtgtttacatctagcctgtggcttcagtgatactc
atttctcaggcttcctgttcaagcctgcagagcatttccaagttctctag
atagtgcagaaataaaagactcttggctttaggtgtgtgtgtgcgcagtg
ctctggaacttgttgccaccttttccaagtggctttggaccctgagtgag
aggcaagcgttgattatgaccaagctgagataaatggtaattcaagttct
tatatgtgacaacatttacctgggcaaaaccagatctttgtttccactcc
aatctctgggtctccaactcatgtgttcagtgttagcaattgaaatttta
gaggaattttctttggactgagttttagaataaaaaaactcagcaagttg
ggaaggaaagatgtgtgcacagaaagtcttgcaatttcattgtctggtct
cgtcactcacagggaatatctgaatgaagcaggcaaggctgttttgtttt
ttcttccctgagttgtgtagaatgggtgtctgagaaccagattagatggc
tacctcggactagagatgtcatcagtaagtgctgtctgtagtatgagacc
tgctcatac
gaattctcactaagtaacccacactggcctcaaattcttgatcctcttgc
tgattaccaggatcatagcaatgtaccacatgtggctagtgagaagtccc
agctgatatcccctattatttttaattggattgtttaccctttccttacc
gattaagtgttctttgtatatctcctatgagaaattttgcaaatagtgcc
cccactttgctgtgtccttttaatttatggatgatgcttcatctctcaga
acatttaaaatgatgcttgtcagatgtcattatctagctcagagaggtgg
tttctttgccaagaccatttagaaattaaatagccagttttccttgaatg
aatttatgttttttttttaccccccttagaatgttaggtttgcatggaat
taattttgttctaattttcagaaggagatgtgattttttttaaaattttt
ttctgtgtggccagccatcatcccagggccatgtctctagaggtgtctct
ccatttctctctgaatggccatgtgttcttgggcccgtgtctgtatttct
ctcttctctttcacagatctgccatttgtcccctgtgtcatgacccccct
cttggatcactgtccattagagtgttctggaagctagtccccatccaaat
acagtttatttaaaatttattatctgtctaaagatttatttcataattcc
ctcaactaacatgcgtacctcattggaaatgcttacttcagatttcatta
tactgaagctgcgtgcatgcatgcatgtgcacacacacccattacacaca
cacaccattgggtctggaaaaggttataggacaacttaccccctccacca
tgtagggttgcgggaacaacttaggtcatagggcttggcagcgtgtgcct
ttagcaactgagccgctctccgtactggttctgtctaggtggcattttct
gttaccagcctttcttcagaacttaattgctgtctaacatcattgacaac
caagctaccctatacttgctttgctggttcaggaaacttgtctacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59512129_59513113
seq2: B6Ng01-049L08.b_47_1005 (reverse)

seq1  GTATGAGTGCAGGTCTTCATACTTACAAGACAAGCACTTTACTGATGGAA  50
      ||||||  ||||||| |||||| ||| |||| ||||| |||||||||  |
seq2  GTATGA--GCAGGTC-TCATAC-TAC-AGAC-AGCAC-TTACTGATG--A  41

seq1  CATCCTCCTAGGTCCGAGGGTAGGCATCTAATCTGGTGTCTTCAGGAACA  100
      ||||   ||| |||||| ||||| ||||||||||||| || ||||  |||
seq2  CATC--TCTA-GTCCGA-GGTAGCCATCTAATCTGGT-TC-TCAG--ACA  83

seq1  CACCATTCTACAC-ACTCAGGGAAAGAAAAAAACAAAAACAGCCTTGCCC  149
      | ||||||||||| |||||||| |||||||||   |||||||||||| ||
seq2  C-CCATTCTACACAACTCAGGG-AAGAAAAAA--CAAAACAGCCTTG-CC  128

seq1  TGCTTCATTCAGATATTTCCCTGTTGAGTGGACGAGAACCCAAGACAATG  199
      ||||||||||||||| ||||||| ||||| |||||||   | ||||||||
seq2  TGCTTCATTCAGATA-TTCCCTG-TGAGT-GACGAGA---CCAGACAATG  172

seq1  AAATTGCAAGACTTTCTGTGCACACATCTTTCCTTCCCAACTTGCCTGAG  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATTGCAAGACTTTCTGTGCACACATCTTTCCTTCCCAACTTG-CTGAG  221

seq1  -TGTTTTATTCTAAAACTCAGTCCAAAGAAAATTCCTCTAAAATTTCAAT  298
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTCTAAAACTCAGTCCAAAGAAAATTCCTCTAAAATTTCAAT  271

seq1  TGCTAACACTGAACACATGAGTTGGAGAACCAGAGATTGGAGTGGAAACA  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCTAACACTGAACACATGAGTTGGAGACCCAGAGATTGGAGTGGAAACA  321

seq1  AAGATCTGGTTTTG-CCAGGTAAATGTTGTCACATATAAGAACTTGAATT  397
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGTTTTGCCCAGGTAAATGTTGTCACATATAAGAACTTGAATT  371

seq1  ACCATTTATCTCAGCTTGGTCATAATCAACGCTTGCCTCTCACTCAGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATCTCAGCTTGGTCATAATCAACGCTTGCCTCTCACTCAGGGT  421

seq1  CCAAAGCCACTTGGAAAAGGTGGCAACAAGTTCCAGAGCACTGCGCACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCACTTGGAAAAGGTGGCAACAAGTTCCAGAGCACTGCGCACAC  471

seq1  ACACACCTAAAGCCAAGAGTCTTTTATTTCTGCACTATCTAGAGAACTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTAAAGCCAAGAGTCTTTTATTTCTGCACTATCTAGAGAACTTG  521

seq1  GAAATGCTCTGCAGGCTTGAACAGGAAGCCTGAGAAATGAGTATCACTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTCTGCAGGCTTGAACAGGAAGCCTGAGAAATGAGTATCACTGA  571

seq1  AGCCACAGGCTAGATGTAAACACTCCTCTTGTGTACAGAGCCTGGACCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGCTAGATGTAAACACTCCTCTTGTGTACAGAGCCTGGACCCA  621

seq1  TTACTTGGAGACACACACACCTTTTGAGTTTCTATATCAACGGCACATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGAGACACACACACCTTTTGAGTTTCTATATCAACGGCACATGA  671

seq1  GGTGGTGAGATAGAACTGCTGTCAATCTTTCTAAGGCTACCATCTCAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAGATAGAACTGCTGTCAATCTTTCTAAGGCTACCATCTCAAAT  721

seq1  GTGGCCTTGGTTAGCCTGGGGACTACTGTCATATTTTCAACAACTGATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGGTTAGCCTGGGGACTACTGTCATATTTTCAACAACTGATGG  771

seq1  CTGTCAGGGATAGAGCTCATAAAAAAGCTTCCCCAAACTTATGGAGGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGGATAGAGCTCATAAAAAAGCTTCCCCAAACTTATGGAGGACA  821

seq1  GCAGCGGGAGGAAACACTCCATCACTGGCAAGTGACACTAATGTATTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGGAGGAAACACTCCATCACTGGCAAGTGACACTAATGTATTCTA  871

seq1  TTAGATTTGCTTATCATGTTAAAGAGCATATTAAAAGGAAATGTTTGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGCTTATCATGTTAAAGAGCATATTAAAAGGAAATGTTTGGAA  921

seq1  ACGGGATGCCAGGCTGTGGGATGATGGATGGAGAATTC  985
      ||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATGCCAGGCTGTGGGATGATGGATGGAGAATTC  959

seq1: chr19_59352438_59353509
seq2: B6Ng01-049L08.g_70_1117

seq1  GAATTCTCACTAAGTAACCCACACTGGCCTCAAATTCTTGATCCTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTAAGTAACCCACACTGGCCTCAAATTCTTGATCCTCTTGC  50

seq1  TGATTACCAGGATCATAGCAATGTACCACATGTGGCTAGTGAGAAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCAGGATCATAGCAATGTACCACATGTGGCTAGTGAGAAGTCCC  100

seq1  AGCTGATATCCCCTATTATTTTTAATTGGATTGTTTACCCTTTCCTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATCCCCTATTATTTTTAATTGGATTGTTTACCCTTTCCTTACC  150

seq1  GATTAAGTGTTCTTTGTATATCTCCTATGAGAAATTTTGCAAATAGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTGTTCTTTGTATATCTCCTATGAGAAATTTTGCAAATAGTGCC  200

seq1  CCCACTTTGCTGTGTCCTTTTAATTTATGGATGATGCTTCATCTCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGCTGTGTCCTTTTAATTTATGGATGATGCTTCATCTCTCAGA  250

seq1  ACATTTAAAATGATGCTTGTCAGATGTCATTATCTAGCTCAGAGAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAATGATGCTTGTCAGATGTCATTATCTAGCTCAGAGAGGTGG  300

seq1  TTTCTTTGCCAAGACCATTTAGAAATTAAATAGCCAGTTTTCCTTGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCCAAGACCATTTAGAAATTAAATAGCCAGTTTTCCTTGAATG  350

seq1  AATTTATGTTTTTTTTTTACCCCCCTTAGAATGTTAGGTTTGCATGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTTTTTTTTTTACCCCCCTTAGAATGTTAGGTTTGCATGGAAT  400

seq1  TAATTTTGTTCTAATTTTCAGAAGGAGATGTGATTTTTTTTAAAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTTCTAATTTTCAGAAGGAGATGTGATTTTTTTTAAAATTTTT  450

seq1  TTCTGTGTGGCCAGCCATCATCCCAGGGCCATGTCTCTAGAGGTGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGGCCAGCCATCATCCCAGGGCCATGTCTCTAGAGGTGTCTCT  500

seq1  CCATTTCTCTCTGAATGGCCATGTGTTCTTGGGCCCGTGTCTGTA-TTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATTTCTCTCTGAATGGCCATGTGTTCTTGGGCCCGTGTCTGTATTTCT  550

seq1  CTCTTCTCTTTCACAGATCTGCCA-TTGT-CCCTGTGTCATGACCCCCCT  597
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  CTCTTCTCTTTCACAGATCTGCCATTTGTCCCCTGTGTCATGACCCCCCT  600

seq1  CTTGGATCACTGTCCATTTAGAGTGTTCTGGAAAGCTAGTCCCCATCCAA  647
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  CTTGGATCACTGTCCA-TTAGAGTGTTCTGG-AAGCTAGTCCCCATCCAA  648

seq1  ATACAGTTTATTTAAGAATTTATTATCTGTCTTAGAGATTTATTTTCATA  697
      ||||||||||||||| ||||||||||||||| || ||||||| |||||||
seq2  ATACAGTTTATTTAA-AATTTATTATCTGTC-TAAAGATTTA-TTTCATA  695

seq1  ATTCCCTCAACTAACATGCGTAACCTCATATGGAGATGCTTACTTCAGAT  747
      ||||||||||||||||||||| ||||||| |||| |||||||||||||||
seq2  ATTCCCTCAACTAACATGCGT-ACCTCAT-TGGAAATGCTTACTTCAGAT  743

seq1  TTCATTATACTGAGGCTGCGTGCATGCATGCATGTGCACACACACACA-T  796
      ||||||||||||| ||||||||||||||||||||||||||||||| || |
seq2  TTCATTATACTGAAGCTGCGTGCATGCATGCATGTGCACACACACCCATT  793

seq1  ACACACACACACCATAGTGCTCTTGAGAAGGTTATAGGACAACTTACCCC  846
      ||||||||||||||| | | ||| || |||||||||||||||||||||||
seq2  ACACACACACACCATTG-GGTCTGGAAAAGGTTATAGGACAACTTACCCC  842

seq1  CTCCCACCATGTAGGTTTGCGGGATCAAACTTAGGTCATAAGGCTTGGCA  896
      || |||||||||||| |||||||| | ||||||||||||| |||||||||
seq2  CT-CCACCATGTAGGGTTGCGGGAAC-AACTTAGGTCATAGGGCTTGGCA  890

seq1  GCGTGTGCCTTTAGCCACTGAGCCGTCTCTCCAGTACTTGGTTCTGTCTT  946
      ||||||||||||||| ||||||||| |||||| |||| ||||||||||| 
seq2  GCGTGTGCCTTTAGCAACTGAGCCG-CTCTCC-GTAC-TGGTTCTGTCTA  937

seq1  GGGTGGGCATTTTCTGTGTACCCAGCCTTTCTTCAGGTACCTTTATTGCC  996
      ||   |||||||||||| || |||||||||||||||  | ||| |||| |
seq2  GG--TGGCATTTTCTGT-TA-CCAGCCTTTCTTCAG--AACTTAATTG-C  980

seq1  TGTCAGACATCCATCGCTCAACCCAAGCCTACCCTTATCCTTGCTTTGCT  1046
      ||||  |||| ||| |  ||| ||||| |||||| ||| |||||||||| 
seq2  TGTCTAACAT-CATTG-ACAA-CCAAG-CTACCC-TATACTTGCTTTGC-  1024

seq1  TGCTTCAGGAGACTTGTCTCAACAGA  1072
      || ||||||| ||||||||  |||||
seq2  TGGTTCAGGAAACTTGTCT--ACAGA  1048