BAC Information

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BAC

Clone NameB6Ng01-049O06
Chromosome19 (Build37)
Map Location 39,077,263 - 39,078,121
singlet/doubletsinglet
Overlap geneLOC209753
Upstream geneFer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells
Downstream geneCyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O06.bB6Ng01-049O06.g
ACCDH874015DH874016
length8631,082
definitionDH874015|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O06, 5' end.DH874016|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacaatctctgctatgtagaatcttgtatatgatgaggaaact
cacagagggtaagactctattgggatcacaagactcataaagagcagagg
ccatagctcctaagggagtgtcagaacagtgcttcgtcaatgggagcttg
aagctttcaactttatggtgttggagatgggtgaatggagttgtttctgg
ggctgggaccgtgatatgggtgtcttctatccacatactgaacaactcat
tgactactatgcatctccatgtcaactcacagatgattcaggaacaaatc
tttccccccttttttcttttctttgctattacaggaaagcggatgtgtgc
aggagaaggcctgactggcatggagctgtttctgttcttcaccatcattt
tacagaattttaacttgaagcctctggttgatgtaaaggacattgataca
acaccagttgtcagtggatttggccatgtgccccctttgtaccaggctcg
ttttattcctgtgtaaagggcagactctctatggtctcatctgtagtgtc
tcctctgagggtcctgcctacttcattattggtacaatagtggctttcag
tcacatttctccatttccttcctatccagtgaatatcaaacctcattgag
cagagttgccagagtcaatacacaggttctctccctgtttcctgtatttt
tgtgacactcccatgcatacttacatagtaagtgctgatacttaatggct
tagttactgtaatactatgttcactataaacagcaaaatctttagaatat
gacattcagaattatctgcttctgcatgtgctaattaaacaaattttgga
cagtctagaactc
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccattttcgtccaggttttcc
agttttgtttgagtatagccttttgtagaaggatctgatggtgttttgga
tttctccaggatctgttgttatgtctcccttttcatttctgatttgttga
ttaggattttgtccctttgcccttctagtgagtctaggtaagggcttatc
tatcttggtgattttcttcaaagaacccacctcctcgtttggttaattct
ttgaatagttcttcttgtttcacttgggtggattcacccctgagtttgat
tatttccctgccgtctactcctcttgggtgaatttgcttcctttttctag
ggcttttagatgtgttgccagctgtagtatgtgctgtctcccgttcctct
tgaagcactcacgctataagttctcctaaaaatgcttcatgtgtccaaag
ttgggactatggctcttttcataaatgctaaagcttattttgttcttttc
tctctgaccaagtacattgagagatggtatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39077263_39078121
seq2: B6Ng01-049O06.b_44_894

seq1  GAATTCAAACAATCTCTGCTATGTAGAATCTTGTATATGATGAGGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAATCTCTGCTATGTAGAATCTTGTATATGATGAGGAAACT  50

seq1  CACAGAGGGTAAGACTCTATTGGGATCACAAGACTCATAAAGAGCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGTAAGACTCTATTGGGATCACAAGACTCATAAAGAGCAGAGG  100

seq1  CCATAGCTCCTAAGGGAGTGTCAGAACAGTGCTTCGTCAATGGGAGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTCCTAAGGGAGTGTCAGAACAGTGCTTCGTCAATGGGAGCTTG  150

seq1  AAGCTTTCAACTTTATGGTGTTGGAGATGGGTGAATGGAGTTGTTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCAACTTTATGGTGTTGGAGATGGGTGAATGGAGTTGTTTCTGG  200

seq1  GGCTGGGACCGTGATATGGGTGTCTTCTATCCACATACTGAACAACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGACCGTGATATGGGTGTCTTCTATCCACATACTGAACAACTCAT  250

seq1  TGACTACTATGCATCTCCATGTCAACTCACAGATGATTCAGGAACAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTATGCATCTCCATGTCAACTCACAGATGATTCAGGAACAAATC  300

seq1  TTTCCCCCCTTTTTTCTTTTCTTTGCTATTACAGGAAAGCGGATGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCCTTTTTTCTTTTCTTTGCTATTACAGGAAAGCGGATGTGTGC  350

seq1  AGGAGAAGGCCTGACTGGCATGGAGCTGTTTCTGTTCTTCACCATCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGCCTGACTGGCATGGAGCTGTTTCTGTTCTTCACCATCATTT  400

seq1  TACAGAATTTTAACTTGAAGCCTCTGGTTGATGTAAAGGACATTGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTTTAACTTGAAGCCTCTGGTTGATGTAAAGGACATTGATACA  450

seq1  ACACCAGTTGTCAGTGGATTTGGCCATGTGCCCCCTTTGTACCAGGCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTTGTCAGTGGATTTGGCCATGTGCCCCCTTTGTACCAGGCTCG  500

seq1  TTTTATTCCTGTGTAAAGGGCAGACTCTCTATGGTCTCATCTGTAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTGTGTAAAGGGCAGACTCTCTATGGTCTCATCTGTAGTGTC  550

seq1  TCCTCTGAGGGTCCTGCCTACTTCATTATTGGTACAATAGTGGCTTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAGGGTCCTGCCTACTTCATTATTGGTACAATAGTGGCTTTCAG  600

seq1  TCACATTTCTCCATTTCCTTCCTATCCAGTGAATATCAAACCTCATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTCTCCATTTCCTTCCTATCCAGTGAATATCAAACCTCATTGAG  650

seq1  CAGAGTTGCCAGAGTCAATACACAGTTTCTCTCCCTGTTTCCTGTA-TTT  699
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  CAGAGTTGCCAGAGTCAATACACAGGTTCTCTCCCTGTTTCCTGTATTTT  700

seq1  TGTGACACTCCCATGCAATACTTACATAGTAAGTGCTGATACTTTAATGG  749
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TGTGACACTCCCATGC-ATACTTACATAGTAAGTGCTGATAC-TTAATGG  748

seq1  CTTAGTTACTGTTAATACTATGTTTTCACTATAAACAGCAAAATCTTTAG  799
      ||||||||||| ||||||||||  ||||||||||||||||||||||||||
seq2  CTTAGTTACTG-TAATACTATG--TTCACTATAAACAGCAAAATCTTTAG  795

seq1  AATATGACAATTCAGAATTATCTGTCTCCTGCATGTGCTAAATAAAAACA  849
      |||||||| ||||||||||||||| || ||||||||||||| |  |||||
seq2  AATATGAC-ATTCAGAATTATCTG-CTTCTGCATGTGCTAATT--AAACA  841

seq1  AATTTTGGAC  859
      ||||||||||
seq2  AATTTTGGAC  851