BAC Information

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BAC

Clone NameB6Ng01-050B07
Chromosome19 (Build37)
Map Location 4,542,659 - 4,673,220
singlet/doubletdoublet
Overlap genePcx, Lrfn4, Rce1, Gm960
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik
Downstream geneSpnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B07.bB6Ng01-050B07.g
ACCDH874138DH874139
length4921,104
definitionDH874138|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B07, 5' end.DH874139|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,542,659 - 4,543,156)(4,672,106 - 4,673,220)
sequence
aaaaatatttattgctgctgttctataaactgccttctgagttcagcagt
tgcatgttctttctgttgtgctgctctgcccaatgtggcatccatcaact
ttcccttgtcctgcctctatggtcagtttcctttcctaggcccctgttct
ctggcttaccctctcatgccagggaaatgcccgggagggggacaagctcc
acatcttcctggcctttcagaggatctacccctgccttgagctagttctg
atatcctttcatgttaagttaaactaggaataaattgctacatgaccaat
ttatagcattttaaaaatatatttttatagctgggcataatggtacatgc
ctttaatttaatcattcaggatacagaggcaggtggatctctgtgatgta
gactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
atgtgaaagtaacagtgactatagagggcagaatagtgtatt
gaattcagagccatttccagccccctttctcctgcattgatgttcccttc
atttctgtactatcttactattttaaacagatgtccctgatttcacagaa
aagtaattgaatcagaaaagggagatttctctaagtaaggcagtcatcca
ctggtaacttaaaggacttatgccgagtgtctgggttcagtggcgaggtc
actgagcttcggtgcagtgtggccttgctgctgccattgtactcagtgct
ttgtgggctgagttacactcacagagcacagcgacaacaatggtctctgt
taaaatgaatgtctggggttttatttggggaaaccacttttaaaaaaata
gttaaagcattattatttcaagacgaattcagtgattagacttttaaagt
tgaattaacttgttatagtgcctttattcctaattgttctacagggcact
gttttattaaagtgggaggtttttgttttgttttggtttggtttggtttt
gtaactcaggtacaggaaataaagaagagagatggtgcatgctatgctat
tctctctgttgtggataatccatgcccctcccagctgctctgtggaaagc
acggtctgagtcacacatacaaaacacgaggaagctcattcctaaggcaa
aaacggcgagactttgactcttgctaaggctacaatagtttaaagagcac
aaacctgaaacggtcattcttgaacttttccgttttcagctctaaattaa
ttcccttagtggacttgtgtttattaagtaatgagctgatttgttgaaaa
aatgcaggactatcagctagaatgttggcactggacatgactttatggaa
actgaaatttcagattggttaactattctaaaaaaattacaaacagctat
ctttcctctagaaagtaactctaatgttgaaacaatttgccgatgtataa
ccagttccaatatttgctttttgcaggtaatctttcatcaggtaaggcct
tcttggtccggagcagttctgatttgttgcatttcttccaaataagagaa
aaagctgcgctaaccacagctctgtgcaatggcttgggtttcaaggaggg
gggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4542659_4543156
seq2: B6Ng01-050B07.b_41_538

seq1  GAATTCAAAAATATTTATTGCTGCTGTTCTATAAACTGCCTTCTGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATATTTATTGCTGCTGTTCTATAAACTGCCTTCTGAGTTC  50

seq1  AGCAGTTGCATGTTCTTTCTGTTGTGCTGCTCTGCCCAATGTGGCATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGCATGTTCTTTCTGTTGTGCTGCTCTGCCCAATGTGGCATCCA  100

seq1  TCAACTTTCCCTTGTCCTGCCTCTATGGTCAGTTTCCTTTCCTAGGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTCCCTTGTCCTGCCTCTATGGTCAGTTTCCTTTCCTAGGCCCC  150

seq1  TGTTCTCTGGCTTACCCTCTCATGCCAGGGAAATGCCCGGGAGGGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGGCTTACCCTCTCATGCCAGGGAAATGCCCGGGAGGGGGACA  200

seq1  AGCTCCACATCTTCCTGGCCTTTCAGAGGATCTACCCCTGCCTTGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACATCTTCCTGGCCTTTCAGAGGATCTACCCCTGCCTTGAGCTA  250

seq1  GTTCTGATATCCTTTCATGTTAAGTTAAACTAGGAATAAATTGCTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATATCCTTTCATGTTAAGTTAAACTAGGAATAAATTGCTACATG  300

seq1  ACCAATTTATAGCATTTTAAAAATATATTTTTATAGCTGGGCATAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTATAGCATTTTAAAAATATATTTTTATAGCTGGGCATAATGGT  350

seq1  ACATGCCTTTAATTTAATCATTCAGGATACAGAGGCAGGTGGATCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTAATTTAATCATTCAGGATACAGAGGCAGGTGGATCTCTGT  400

seq1  GATGTAGACTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGACTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450

seq1  ATGTATAAGTGAAAGTCACAGTGTCTATGGAGGGCAGAAAAGTGTATT  498
       |||||| |||||||| |||||| |||| |||||||||| ||||||||
seq2  GTGTATATGTGAAAGTAACAGTGACTATAGAGGGCAGAATAGTGTATT  498

seq1: chr19_4672106_4673220
seq2: B6Ng01-050B07.g_66_1169 (reverse)

seq1  GCCCCCCTCCTCTGAAGCCAGAGCCAGCTTTGCAGAGAGC-CTGGGTAGC  49
      ||||||||||| |||| ||  |||||   ||||| |||||  ||| ||||
seq2  GCCCCCCTCCT-TGAAACCCAAGCCA---TTGCACAGAGCTGTGGTTAGC  46

seq1  GCAGGCTGTATTTC-TATATGAGAAGGAATGCCAACAAATCAGAACTGCA  98
      ||| ||| | | || ||| || |||| |||| ||||||||||||||||| 
seq2  GCA-GCTTTTTCTCTTATTTG-GAAGAAATG-CAACAAATCAGAACTGC-  92

seq1  TCAGGAGCCAAGAAGGCCTTTACCTGATGAAAGATTACCTGCAAAAAGCA  148
      || ||| ||||||||||| |||||||||||||||||||||||||||||| 
seq2  TCCGGA-CCAAGAAGGCC-TTACCTGATGAAAGATTACCTGCAAAAAGC-  139

seq1  AAATATGGGAACTGGTTATACATCGGCAAATTGTTTCAACATTTAGAGTT  198
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATATTGGAACTGGTTATACATCGGCAAATTGTTTCAACA-TTAGAGTT  188

seq1  ACTTTCTAGAGGAAAGATAGCTGTTTGTAATTTTTTTAGATTAGTTAAAC  248
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  ACTTTCTAGAGGAAAGATAGCTGTTTGTAATTTTTTTAGAATAGTT-AAC  237

seq1  CAATCTGAAATTTCAGTTTCCATAAAGTCATGTCCAGTGCCAACATTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGAAATTTCAGTTTCCATAAAGTCATGTCCAGTGCCAACATTCTA  287

seq1  GCTGATAGTCCTGCATTTTTTCAACAAATCAGCTCATTACTTAATAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGTCCTGCATTTTTTCAACAAATCAGCTCATTACTTAATAAACA  337

seq1  CAAGTCCACTAAGGGAATTAATTTAGAGCTGAAAACGGAAAAGTTCAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCACTAAGGGAATTAATTTAGAGCTGAAAACGGAAAAGTTCAAGA  387

seq1  ATGACCGTTTCAGGTTTGTGCTCTTTAAACTATTGTAGCCTTAGCAAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCGTTTCAGGTTTGTGCTCTTTAAACTATTGTAGCCTTAGCAAGAG  437

seq1  TCAAAGTCTCGCCGTTTTTGCCTTAGGAATGAGCTTCCTCGTGTTTTGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCTCGCCGTTTTTGCCTTAGGAATGAGCTTCCTCGTGTTTTGTA  487

seq1  TGTGTGACTCAGACCGTGCTTTCCACAGAGCAGCTGGGAGGGGCATGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTCAGACCGTGCTTTCCACAGAGCAGCTGGGAGGGGCATGGAT  537

seq1  TATCCACAACAGAGAGAATAGCATAGCATGCACCATCTCTCTTCTTTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAACAGAGAGAATAGCATAGCATGCACCATCTCTCTTCTTTATT  587

seq1  TCCTGTACCTGAGTTACAAAACCAAACCAAACCAAAACAAAACAAAAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACCTGAGTTACAAAACCAAACCAAACCAAAACAAAACAAAAACC  637

seq1  TCCCACTTTAATAAAACAGTGCCCTGTAGAACAATTAGGAATAAAGGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTAATAAAACAGTGCCCTGTAGAACAATTAGGAATAAAGGCAC  687

seq1  TATAACAAGTTAATTCAACTTTAAAAGTCTAATCACTGAATTCGTCTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGTTAATTCAACTTTAAAAGTCTAATCACTGAATTCGTCTTGA  737

seq1  AATAATAATGCTTTAACTATTTTTTTAAAAGTGGTTTCCCCAAATAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGCTTTAACTATTTTTTTAAAAGTGGTTTCCCCAAATAAAAC  787

seq1  CCCAGACATTCATTTTAACAGAGACCATTGTTGTCGCTGTGCTCTGTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACATTCATTTTAACAGAGACCATTGTTGTCGCTGTGCTCTGTGAG  837

seq1  TGTAACTCAGCCCACAAAGCACTGAGTACAATGGCAGCAGCAAGGCCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCAGCCCACAAAGCACTGAGTACAATGGCAGCAGCAAGGCCACA  887

seq1  CTGCACCGAAGCTCAGTGACCTCGCCACTGAACCCAGACACTCGGCATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCGAAGCTCAGTGACCTCGCCACTGAACCCAGACACTCGGCATAA  937

seq1  GTCCTTTAAGTTACCAGTGGATGACTGCCTTACTTAGAGAAATCTCCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAAGTTACCAGTGGATGACTGCCTTACTTAGAGAAATCTCCCTT  987

seq1  TTCTGATTCAATTACTTTTCTGTGAAATCAGGGACATCTGTTTAAAATAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTCAATTACTTTTCTGTGAAATCAGGGACATCTGTTTAAAATAG  1037

seq1  TAAGATAGTACAGAAATGAAGGGAACATCAATGCAGGAGAAAGGGGGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGTACAGAAATGAAGGGAACATCAATGCAGGAGAAAGGGGGCTG  1087

seq1  GAAATGGCTCTGAATTC  1115
      |||||||||||||||||
seq2  GAAATGGCTCTGAATTC  1104