BAC Information

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BAC

Clone NameB6Ng01-050F06
Chromosome19 (Build37)
Map Location 58,823,451 - 58,964,425
singlet/doubletdoublet
Overlap genePnliprp2, 1700019N19Rik, Hspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F06.bB6Ng01-050F06.g
ACCDH874308DH874309
length1,1071,166
definitionDH874308|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F06, 5' end.DH874309|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,963,301 - 58,964,425)(58,823,451 - 58,824,617)
sequence
gaattccttttctgtgttgacacagatttcataactgcaggcccagctct
gtgaggaggaccaggggaaggcagggcctagggctcttggtcctctgaca
gccctgaggctgattaaaagctggagtgagtgaaaagaaagacagtcatg
agagactgagtgcttcgaatctgatccttttagtaacaattaaaccgtca
ctagaacagtaaggcaagcaagagacgccttgagaatacgagatgggcag
agcaaggctatccttggcttcaccttggccctggggctcattgcccctgc
cactcctcccccacccctctgccaccctccccccactcctctgcagagcc
tttattgggtcatttcattgagacatcacttctctcctgggaaggataaa
gcataaaacaccaggcgagatctgcgcatgtgtgctgtggaatcactcag
ggctggtggagtaacattaataatagtctggttttcctgaagcacagatg
gggtatggagagagctagccacaggcagctgagcacagggagaagctcct
accagagcagcaagttaggttctcagtggacttcgtaggggaaacacaga
catttttttgtttgtttgtttgtttgtgaatgtgtggctgaaatttagca
tgaccttcagctaagaactaagaacgaaggggtcggggtcgaggccagca
agtcatcaatgtgacctgtcactcaagagatgtcgcagaggctttttata
ccaactctcctcttccccctcctcctcttcctcctcttctcccttctgct
cctctcctccactcccactctccccccccccatttcctcgtcttcttcct
cctcctggccctctcttctcctcccccttctcctcctctttggagatatt
tcaaaatacttgacttcaaattatggggtgtttcgcacttcactagattt
tcattcatctaatgtgtaatgtcatggagacttaaccacaatttaaggta
cttgatcgcaagaagttcctgggggacactgtgaatatgcactcggaacc
tcatttaagagggatgcctatgtgtttactcacgagagccaaactgtgtt
gtggtgt
gaattcctagtattagtgtctgtaggttctaccaaggaaatcaacagtgt
ggtgagttgtcacactctaccctcagctgctgcaagttaagtgtgttaac
ctcagggagtagtcctggtctggctacagacctacaaggtgaggagggtt
attataatccctggatctgagaggatgcagtacttacagagaaggcttta
tgcccaactaatctacaccttgtttacaatctcccaaggtacacaaactg
gtcctggcttaggacatcagagtgcacggattatcctttgaagacatggt
caagatgttctatctcagctgcagaccagaatcacattgaagcatgccta
aaaggaaaatcacacatgagtagttaaaaagcagccacaaaatctgatgc
tgggaaaacctgtgggtcattcccacattcacacaggtgtcagcccacga
tctgctgcaggagcttttcattcactgtaaagaaaattgattttgcattc
ctttgagaggaagctgcctacttagtgtgtagttttaatggttattttag
ccagttgtaaaaatgaaatttttccccttgtgctaagttgcatcaaaact
tttatctcctgagctgatccttggtgaatcagaatattccagatcatcat
gaggatgtttcacgaagaatggcatctgcatagctgaggaccaaaaccat
ggaagatacagccttggggctttgagaatagaaactttctctggagccct
ggaggaagaggcaagtgtgagaggtgtgagatgtggcaactttgctgaca
ggaggacttgtgggtgtgaaaagaccatgtagttatattaaaggcctggt
ctctgggtgacttacagaagaaaataatttgtatcatagttgagagacca
ggaagctacactgaagtgtctggcttctagttaatctgtttctctgggaa
aagcagtgcattctgcaactgtcaggcaggaagacgacatccaaggtgaa
cagaactaagtttgtgcccggctccatggagtcatgtaaccttgctaggg
actatcggaagccaagtagaaacgcctaggtgcttcactagcaacactcc
ttgcctttggaaacacaaacctcaagaatatagtgtagccaagctaagtc
tctcccaaggcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58963301_58964425
seq2: B6Ng01-050F06.b_42_1148 (reverse)

seq1  ACACACACACACACAGTTTGGC-CTCCTGA-AATAAACCTATGCATTCCT  48
      |||| |||| |||||||||||| ||| |||  | | || || |||| |||
seq2  ACAC-CACA-ACACAGTTTGGCTCTCGTGAGTAAACACATAGGCATCCCT  48

seq1  TCTTTAAATGATGTTTCCAAAGTGCATAGTTACACAGTGTCACCCAGGAA  98
         |||||||| |||  |  ||||||||  | ||||||||| ||||||||
seq2  --CTTAAATGAGGTT--CCGAGTGCATA--TTCACAGTGTCCCCCAGGAA  92

seq1  ACTCATTTGCGAATCAAGTACCTTAAAATTGT-GTTAAGTTCTTCATTGA  147
        ||  ||||| |||||||||||| ||||||| |||||| ||| || |||
seq2  CTTC--TTGCG-ATCAAGTACCTT-AAATTGTGGTTAAG-TCTCCA-TGA  136

seq1  CATTTAACACATTAGATG-ATGAAAATCTAGTTGAAGTGCGTAACA-CCC  195
      ||||  |||||||||||| |||||||||||| ||||||||| |||| |||
seq2  CATT--ACACATTAGATGAATGAAAATCTAG-TGAAGTGCGAAACACCCC  183

seq1  ATAATTTTGAAGTC-AGTATTTTGAAATATCTACCAAAGAGGAGGAGAAG  244
      |||| ||||||||| ||||||||||||||||| |||||||||||||||||
seq2  ATAA-TTTGAAGTCAAGTATTTTGAAATATCT-CCAAAGAGGAGGAGAAG  231

seq1  GGGGAGGAGGAAGAGGAGGGACGAGGGAGGAGGAAGAAGACGAGG-AATG  293
      |||||||| ||||| ||||| |   |||||||||||||||||||| ||||
seq2  GGGGAGGA-GAAGA-GAGGGCC--AGGAGGAGGAAGAAGACGAGGAAATG  277

seq1  GGGGGGGGGAGGAGTGGGAGTGGAGGAGGAGGAGCAGAAGGAGGAAGAGG  343
      |||||||||| |||||||||||||||| |||||||||||||  |||||||
seq2  GGGGGGGGGA-GAGTGGGAGTGGAGGA-GAGGAGCAGAAGGGAGAAGAGG  325

seq1  AGGAAGAGGAGGAGGGGGAAGAGGAGAGTTGGTATAAAAAGCCTCTGCGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGAGGAGGGGGAAGAGGAGAGTTGGTATAAAAAGCCTCTGCGA  375

seq1  CATCTCTTGAGTGACAGGTCACATTGATGACTTGCTGGCCTCGACCCCGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGAGTGACAGGTCACATTGATGACTTGCTGGCCTCGACCCCGA  425

seq1  CCCCTTCGTTCTTAGTTCTTAGCTGAAGGTCATGCTAAATTTCAGCCACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCGTTCTTAGTTCTTAGCTGAAGGTCATGCTAAATTTCAGCCACA  475

seq1  CATTCACAAACAAACAAACAAACAAAAAAATGTCTGTGTTTCCCCTACGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAACAAACAAACAAACAAAAAAATGTCTGTGTTTCCCCTACGA  525

seq1  AGTCCACTGAGAACCTAACTTGCTGCTCTGGTAGGAGCTTCTCCCTGTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTGAGAACCTAACTTGCTGCTCTGGTAGGAGCTTCTCCCTGTGC  575

seq1  TCAGCTGCCTGTGGCTAGCTCTCTCCATACCCCATCTGTGCTTCAGGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCTGTGGCTAGCTCTCTCCATACCCCATCTGTGCTTCAGGAAA  625

seq1  ACCAGACTATTATTAATGTTACTCCACCAGCCCTGAGTGATTCCACAGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTATTATTAATGTTACTCCACCAGCCCTGAGTGATTCCACAGCA  675

seq1  CACATGCGCAGATCTCGCCTGGTGTTTTATGCTTTATCCTTCCCAGGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCGCAGATCTCGCCTGGTGTTTTATGCTTTATCCTTCCCAGGAGA  725

seq1  GAAGTGATGTCTCAATGAAATGACCCAATAAAGGCTCTGCAGAGGAGTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATGTCTCAATGAAATGACCCAATAAAGGCTCTGCAGAGGAGTGG  775

seq1  GGGGAGGGTGGCAGAGGGGTGGGGGAGGAGTGGCAGGGGCAATGAGCCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGTGGCAGAGGGGTGGGGGAGGAGTGGCAGGGGCAATGAGCCCC  825

seq1  AGGGCCAAGGTGAAGCCAAGGATAGCCTTGCTCTGCCCATCTCGTATTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAGGTGAAGCCAAGGATAGCCTTGCTCTGCCCATCTCGTATTCT  875

seq1  CAAGGCGTCTCTTGCTTGCCTTACTGTTCTAGTGACGGTTTAATTGTTAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGTCTCTTGCTTGCCTTACTGTTCTAGTGACGGTTTAATTGTTAC  925

seq1  TAAAAGGATCAGATTCGAAGCACTCAGTCTCTCATGACTGTCTTTCTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGATCAGATTCGAAGCACTCAGTCTCTCATGACTGTCTTTCTTTT  975

seq1  CACTCACTCCAGCTTTTAATCAGCCTCAGGGCTGTCAGAGGACCAAGAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCCAGCTTTTAATCAGCCTCAGGGCTGTCAGAGGACCAAGAGC  1025

seq1  CCTAGGCCCTGCCTTCCCCTGGTCCTCCTCACAGAGCTGGGCCTGCAGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCCCTGCCTTCCCCTGGTCCTCCTCACAGAGCTGGGCCTGCAGTT  1075

seq1  ATGAAATCTGTGTCAACACAGAAAAGGAATTC  1125
      ||||||||||||||||||||||||||||||||
seq2  ATGAAATCTGTGTCAACACAGAAAAGGAATTC  1107

seq1: chr19_58823451_58824617
seq2: B6Ng01-050F06.g_67_1232

seq1  GAATTCCTAGTATTAGTGTCTGTAGGTTCTACCAAGGAAATCAACAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTATTAGTGTCTGTAGGTTCTACCAAGGAAATCAACAGTGT  50

seq1  GGTGAGTTGTCACACTCTACCCTCAGCTGCTGCAAGTTAAGTGTGTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTGTCACACTCTACCCTCAGCTGCTGCAAGTTAAGTGTGTTAAC  100

seq1  CTCAGGGAGTAGTCCTGGTCTGGCTACAGACCTACAAGGTGAGGAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGTAGTCCTGGTCTGGCTACAGACCTACAAGGTGAGGAGGGTT  150

seq1  ATTATAATCCCTGGATCTGAGAGGATGCAGTACTTACAGAGAAGGCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATCCCTGGATCTGAGAGGATGCAGTACTTACAGAGAAGGCTTTA  200

seq1  TGCCCAACTAATCTACACCTTGTTTACAATCTCCCAAGGTACACAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACTAATCTACACCTTGTTTACAATCTCCCAAGGTACACAAACTG  250

seq1  GTCCTGGCTTAGGACATCAGAGTGCACGGATTATCCTTTGAAGACATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCTTAGGACATCAGAGTGCACGGATTATCCTTTGAAGACATGGT  300

seq1  CAAGATGTTCTATCTCAGCTGCAGACCAGAATCACATTGAAGCATGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTTCTATCTCAGCTGCAGACCAGAATCACATTGAAGCATGCCTA  350

seq1  AAAGGAAAATCACACATGAGTAGTTAAAAAGCAGCCACAAAATCTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATCACACATGAGTAGTTAAAAAGCAGCCACAAAATCTGATGC  400

seq1  TGGGAAAACCTGTGGGTCATTCCCACATTCACACAGGTGTCAGCCCACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAACCTGTGGGTCATTCCCACATTCACACAGGTGTCAGCCCACGA  450

seq1  TCTGCTGCAGGAGCTTTTCATTCACTGTAAAGAAAATTGATTTTGCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCAGGAGCTTTTCATTCACTGTAAAGAAAATTGATTTTGCATTC  500

seq1  CTTTGAGAGGAAGCTGCCTACTTAGTGTGTAGTTTTAATGGTTATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAGGAAGCTGCCTACTTAGTGTGTAGTTTTAATGGTTATTTTAG  550

seq1  CCAGTTGTAAAAATGAAATTTTTCCCCTTGTGCTAAGTTGCATCAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTAAAAATGAAATTTTTCCCCTTGTGCTAAGTTGCATCAAAACT  600

seq1  TTTATCTCCTGAGCTGATCCTTGGTGAATCAGAATATTCCAGATCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCTGAGCTGATCCTTGGTGAATCAGAATATTCCAGATCATCAT  650

seq1  GAGGATGTTTCAGGAAGAATGGCATCTGCATAGCTGAGGACCAAAACCAT  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTTTCACGAAGAATGGCATCTGCATAGCTGAGGACCAAAACCAT  700

seq1  GGAAGATACAGCCTT-GGGCTTTGAGAATAGAAACTTTCTCTGGAGCCCT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAGATACAGCCTTGGGGCTTTGAGAATAGAAACTTTCTCTGGAGCCCT  750

seq1  GGAGGAAGAGGCAAGTGTGAGAGGTGTGAGATGTGGCAACTTTGCTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAGGCAAGTGTGAGAGGTGTGAGATGTGGCAACTTTGCTGACA  800

seq1  GGAGGAACTGTGGGTGTG-AAAGACCATGTAGTTATAATAAAGGCCTGGT  848
      ||||||  |||||||||| |||||||||||||||||| ||||||||||||
seq2  GGAGGACTTGTGGGTGTGAAAAGACCATGTAGTTATATTAAAGGCCTGGT  850

seq1  C-CTGGGTGACTTACAG-AGAAAATAA-TTGTATCATAGTTGTAGAGACA  895
      | ||||||||||||||| ||||||||| |||||||||||||| |||||| 
seq2  CTCTGGGTGACTTACAGAAGAAAATAATTTGTATCATAGTTG-AGAGACC  899

seq1  GGGAAGCTACAACTGAAGTGTCTGGCTTCTAGTTGAGTCTG-TTCTCTGG  944
       ||||||||| ||||||||||||||||||||||| | |||| ||||||||
seq2  AGGAAGCTAC-ACTGAAGTGTCTGGCTTCTAGTT-AATCTGTTTCTCTGG  947

seq1  GAAAAGCAGGTGCATTCTGCAACTGTCAGGCAGGAAGACAGACATCAAGG  994
      |||||||| |||||||||||||||||||||||||||||| |||||| | |
seq2  GAAAAGCA-GTGCATTCTGCAACTGTCAGGCAGGAAGAC-GACATCCAAG  995

seq1  GTG-ACAGGACTAAGTTGGATGCCGGCCACATGGAAGTCATGTTAACTTG  1043
      ||| |||| |||||||| |   |||||  ||||| |||||||| | ||||
seq2  GTGAACAGAACTAAGTTTGTGCCCGGCTCCATGG-AGTCATGTAACCTTG  1044

seq1  CTA-GGACTATCGG-AGCAAAGTAG-AACAGCTAGGTGGCTTCACCAGCA  1090
      ||| |||||||||| ||| |||||| |||  |||||| ||||||| ||||
seq2  CTAGGGACTATCGGAAGCCAAGTAGAAACGCCTAGGT-GCTTCACTAGCA  1093

seq1  GACAC-GCTTGCCTTCTGGAGACTACGAAGCCCAAGATCAAGGTGTAGCC  1139
       ||||  |||||||| |||| || || || | |||||  |  ||||||||
seq2  -ACACTCCTTGCCTT-TGGAAAC-ACAAACCTCAAGAATATAGTGTAGCC  1140

seq1  AAGCTAGGTTCTTCCCAAGGGGCACACA  1167
      |||||| ||   ||||||  ||||||||
seq2  AAGCTAAGTCTCTCCCAA--GGCACACA  1166