BAC Information

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BAC

Clone NameB6Ng01-050F17
Chromosome19 (Build37)
Map Location 25,362,563 - 25,481,912
singlet/doubletdoublet
Overlap geneAnkrd15, LOC433233
Upstream geneLOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F17.bB6Ng01-050F17.g
ACCDH874326DH874327
length1,054251
definitionDH874326|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F17, 5' end.DH874327|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,362,563 - 25,363,627)(25,481,662 - 25,481,912)
sequence
gaattcaaaccttcctttgatttgactttactttcaaacgtatattaggg
gaaaaaaaaaccccaaaacaatagactatacctaatagatttagtggaaa
tttagcccaaataccatggcaatctgagggaatgatccctttaaatatat
cattcctatggggggatcctcagatttctatgcctaggtgagtcctctgg
agggcaagatgtgtaaagtttggggttttctgagtccagtctagccattt
tctgttattggccagagagctggcgtttctttcttttttttttttttttt
cactgtaaaaatattttttaatcaaaaactggaatattagcatttagaaa
atcattttcaatagtatttccaatgaactttatataccttatgtaagcac
gaaggtgctttttcccaactttgggactaaagaaaaagggtaaaagagtt
ttgatgaatatcattaagatcaagtcaaattctcataaattcctatagtt
aaaaccgtctgtctggatagatgagaacagaggcagcaagtgggtacctg
cccactcccccatcatacaaccaaagcacaccatccaaatttccagcaca
tggtctgggtttgagttttttgactatcaaaactaatgacctttcagtcc
ctgccttagcaatcgtcaggccactctcacagaggctgctgcctcagtag
gagggggggatgctgcatgcagatcaaagatctggctgaagctgctgatg
ctgacaggcaaaggcaggtctacagaagtggctgaccgctctggcgtgag
atcagtgtgaagagcagagctaacccatcacccagcagctgctttctaca
gactaagcagccaaggtctgcttcgagagagaagactggcttttgtaaga
catactgctcacattttggtttagttcttgatcagaaatctaaaactaag
cctggcatggtggcgcacactttagtcccagcacttgggagcagaagcag
gcaaatctcttgagttcatgcagctggttacaagtgagttcaggacagcc
aggg
tctttgaaataagttcccgagcgcgagctgacccagagttccagtgcctg
gaaatttgagctcatgctaacagaatgtatcttcccctctctctccaact
ccacgggacagtgagttagctcaaaatatgcagccagacctgtttccaga
agtgtctgaaattccaaaggaagcaaggagagaaggacggagcccaccat
ctcagggtggagggtgggggctgaatactcacggtgtggggatggggggg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25362563_25363627
seq2: B6Ng01-050F17.b_46_1099

seq1  GAATTCAAACCTTCCTTTGATTTGACTTTACTTTCAAACGTATATTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTTCCTTTGATTTGACTTTACTTTCAAACGTATATTAGGG  50

seq1  GAAAAAAAAACCCCAAAACAATAGACTATACCTAATAGATTTAGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACCCCAAAACAATAGACTATACCTAATAGATTTAGTGGAAA  100

seq1  TTTAGCCCAAATACCATGGCAATCTGAGGGAATGATCCCTTTAAATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCAAATACCATGGCAATCTGAGGGAATGATCCCTTTAAATATAT  150

seq1  CATTCCTATGGGGGGATCCTCAGATTTCTATGCCTAGGTGAGTCCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATGGGGGGATCCTCAGATTTCTATGCCTAGGTGAGTCCTCTGG  200

seq1  AGGGCAAGATGTGTAAAGTTTGGGGTTTTCTGAGTCCAGTCTAGCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGATGTGTAAAGTTTGGGGTTTTCTGAGTCCAGTCTAGCCATTT  250

seq1  TCTGTTATTGGCCAGAGAGCTGGCGTTTCTTTCTTTTTTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTGGCCAGAGAGCTGGCGTTTCTTTCTTTTTTTTTTTTTTTTT  300

seq1  CACTGTAAAAATATTTTTTAATCAAAAACTGGAATATTAGCATTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAAAATATTTTTTAATCAAAAACTGGAATATTAGCATTTAGAAA  350

seq1  ATCATTTTCAATAGTATTTCCAATGAACTTTATATACCTTATGTAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCAATAGTATTTCCAATGAACTTTATATACCTTATGTAAGCAC  400

seq1  GAAGGTGCTTTTTCCCAACTTTGGGACTAAAGAAAAAGGGTAAAAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCTTTTTCCCAACTTTGGGACTAAAGAAAAAGGGTAAAAGAGTT  450

seq1  TTGATGAATATCATTAAGATCAAGTCAAATTCTCATAAATTCCTATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAATATCATTAAGATCAAGTCAAATTCTCATAAATTCCTATAGTT  500

seq1  AAAACCGTCTGTCTGGATAGATGAGAACAGAGGCAGCAAGTGGGTACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGTCTGTCTGGATAGATGAGAACAGAGGCAGCAAGTGGGTACCTG  550

seq1  CCCACTCCCCCATCATACAACCAAAGCACACCATCCAAATTTCCAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCCCATCATACAACCAAAGCACACCATCCAAATTTCCAGCACA  600

seq1  TGGTCTGGGTTTGAGTTTTTTGACTATCAAAACTAATGACCTTTCAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGGTTTGAGTTTTTTGACTATCAAAACTAATGACCTTTCAGTCC  650

seq1  CTGCCTTAGCAATCGTCAGGCCACTCTCACAGAGGCTGCTGCCTCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAGCAATCGTCAGGCCACTCTCACAGAGGCTGCTGCCTCAGTAG  700

seq1  GAGGAGGGGATGCTGCATGCAGATCAAAGATCTGGCTGAAGCTGCTGATG  750
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGGATGCTGCATGCAGATCAAAGATCTGGCTGAAGCTGCTGATG  750

seq1  CTGACAGGCAAAGGCAGGTCTACAGAAGTGGCTGACCGCTCTGGCGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGCAAAGGCAGGTCTACAGAAGTGGCTGACCGCTCTGGCGTGAG  800

seq1  ATCAGTGTGAAGAGCCAGAGCTAACCCATCACCCAGCAGCTGCTTTCTAC  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTGAAGAG-CAGAGCTAACCCATCACCCAGCAGCTGCTTTCTAC  849

seq1  AGGACTAAAGCAGCCAAGGTCTGCTTCGAGAGAGAAGACTGGC-TTTGTA  899
      | |||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  A-GACT-AAGCAGCCAAGGTCTGCTTCGAGAGAGAAGACTGGCTTTTGTA  897

seq1  AGACATACTGCTCACATTTTGGTTTAGTTCTTGATCAGAAATCTAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGACATACTGCTCACATTTTGGTTTAGTTCTTGATCAGAAATCTAAAAC-  946

seq1  TAAGCCTGGCATGGTGGCGCACACCTTTAGTCCCAGCACTTGGGAAGCAG  999
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TAAGCCTGGCATGGTGGCGCACA-CTTTAGTCCCAGCACTTGGG-AGCAG  994

seq1  AAGCAGGCAAATCTCTTGAGTTCAATGCCAGCCTGGTCTACAGAGTGAGT  1049
      ||||||||||||||||||||||| ||| ||| ||||| |||| |||||||
seq2  AAGCAGGCAAATCTCTTGAGTTC-ATG-CAG-CTGGT-TACA-AGTGAGT  1039

seq1  TCCAGGACAGCCAGGG  1065
      | ||||||||||||||
seq2  T-CAGGACAGCCAGGG  1054

seq1: chr19_25481662_25481912
seq2: B6Ng01-050F17.g_72_322 (reverse)

seq1  ACCCCCCCATCCCCACACCGTGAGTATTCAGCCCCCACCCTCCACCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCATCCCCACACCGTGAGTATTCAGCCCCCACCCTCCACCCTGA  50

seq1  GATGGTGGGCTCCGTCCTTCTCTCCTTGCTTCCTTTGGAATTTCAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGGCTCCGTCCTTCTCTCCTTGCTTCCTTTGGAATTTCAGACAC  100

seq1  TTCTGGAAACAGGTCTGGCTGCATATTTTGAGCTAACTCACTGTCCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAACAGGTCTGGCTGCATATTTTGAGCTAACTCACTGTCCCGTG  150

seq1  GAGTTGGAGAGAGAGGGGAAGATACATTCTGTTAGCATGAGCTCAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGAGAGAGGGGAAGATACATTCTGTTAGCATGAGCTCAAATTT  200

seq1  CCAGGCACTGGAACTCTGGGTCAGCTCGCGCTCGGGAACTTATTTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTGGAACTCTGGGTCAGCTCGCGCTCGGGAACTTATTTCAAAG  250

seq1  A  251
      |
seq2  A  251