BAC Information

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BAC

Clone NameB6Ng01-050H23
Chromosome19 (Build37)
Map Location 43,451,887 - 43,573,668
singlet/doubletdoublet
Overlap geneLOC545291, Cnnm1
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, EG627624
Downstream geneGot1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H23.bB6Ng01-050H23.g
ACCDH874422DH874423
length1,0451,061
definitionDH874422|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H23, 5' end.DH874423|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,451,887 - 43,452,948)(43,572,588 - 43,573,668)
sequence
gaattctgataggaacatgaaagacaaagacataggagttcaacaaatct
tcacaagctattcatgccactcgtctggaatgtgtgtattcattctgttt
aaatcgccacccacagacaaatgcataaagtaaattgccaaattttctcg
ttttcccatctcctccttctttctccccttctgcccgaccactcaggagt
gctctgagaacaactgagagagaggcctaaggaagcactgatgagctgac
tgacatccaacccactctgaagaactctcacagaaagctctaccactaag
aacctaactaaccttggcagcctaaacaaaccagggatattttgaaggaa
aaaaaaaaaaacttagttttcataagggcacaatctcccaggacttatgc
tgagagaatagaatgttttaataaatttggcaggtaaaataatgatgttt
gatatgagtaacagtgttatcgtttatgtagtacaggaaatttgattact
tgaacctgtgaataacctgacagccatacctgctcttcatttactttctc
tgatttgatatatctgaagtttaacatggtggcaaatgcttataatctta
gctatgcaagatgttgagacaagaagatcacaaattcaagacaacttagt
gagatcatctcgaaattagagtttaaggggctggagcggtggctcagcag
ttaagagtatattaaaagctgggcagtggtggtgcacgcctttaatccca
gcactcaggaggcagaggcaggcggatttctgagttcgagaccagcctgg
tctacagagtgagttccaggacagccagggctacacagagaaaccctgtc
tcgaaaaaacaaacaaacaaacaagagtacattaaactgtctagaatgtc
agttcccaggacctatgtgagacgtctcacactgtctgtactcatctcag
aggtatctgatgctctgtatctcagtactgcatatacatgggtgactaca
tagaataataacatacacgaataaatttttaatataaatttaaaa
gaattctttccaagcttaccaagacaccctgttctgttagtagggccttt
tagtttaaaaaaagacctttgaccttgagccagaatttggactgttgctg
tcattctgccgtcattcctcattcctttctttgaatcagtctgttggtac
tgaaacagtctggcttcctgccttcggagaggaacggtggttatccctgg
tctggctttcctttgcaaagccctccgcccttgcagatcctaccatctgg
ctgggctgactctctgtaggtgccccaggctgctgggtgtggacgaggta
aaggttattagacgttagcttgcagcttgtttccatttgtatcctttatt
gaggtttgttctttcagctctaggatgctgccttccctggaagagtttct
tgcattctccctaggggtggcttaagccatcagactccagtacctctgat
ggggacagacttggttgttgtgagcaaaagagcattgcttgttgctcttg
cagaggactggggttctgtttctagcacccacatgaaaccacaactgccc
ggaattccagatcaaggggatctgacgccctcttctggcttccaggggta
cctacatatgctaaggcatacacataaataaatcttaaaaaacaattttg
atcaatgtggccctccaaaatgtcctacccagtaaccaccccccaccttt
tttttttttttttttttgagacagggtctctctgtgtatccctgactgtc
ctggaactcactctgtaaaccaggctggccttaaactcagaaatctgcct
gcctctgcctcccgtgctgggattaaagtgtgcgccaccactgactggct
tcccagtaaactcttactagggcatacttttcttgttagggaaagagatt
ttcttctagttttttatttttaatttattttataaaatttatttattaga
aaatttctaatttttcttctaggggagtgtcaaactattaaattaggaaa
caactttagttctcattgccagtatccacttgtaaaagttttagtattta
agaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43451887_43452948
seq2: B6Ng01-050H23.b_45_1089

seq1  GAATTCTGATAGGAACATGAAAGACAAAGACATAGGAGTTCAACAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAGGAACATGAAAGACAAAGACATAGGAGTTCAACAAATCT  50

seq1  TCACAAGCTATTCATGCCACTCGTCTGGAATGTGTGTATTCATTCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCTATTCATGCCACTCGTCTGGAATGTGTGTATTCATTCTGTTT  100

seq1  AAATCGCCACCCACAGACAAATGCATAAAGTAAATTGCCAAATTTTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGCCACCCACAGACAAATGCATAAAGTAAATTGCCAAATTTTCTCG  150

seq1  TTTTCCCATCTCCTCCTTCTTTCTCCCCTTCTGCCCGACCACTCAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATCTCCTCCTTCTTTCTCCCCTTCTGCCCGACCACTCAGGAGT  200

seq1  GCTCTGAGAACAACTGAGAGAGAGGCCTAAGGAAGCACTGATGAGCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGAACAACTGAGAGAGAGGCCTAAGGAAGCACTGATGAGCTGAC  250

seq1  TGACATCCAACCCACTCTGAAGAACTCTCACAGAAAGCTCTACCACTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCAACCCACTCTGAAGAACTCTCACAGAAAGCTCTACCACTAAG  300

seq1  AACCTAACTAACCTTGGCAGCCTAAACAAACCAGGGATATTTTGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACTAACCTTGGCAGCCTAAACAAACCAGGGATATTTTGAAGGAA  350

seq1  AAAAAAAAAAACTTAGTTTTCATAAGGGCACAATCTCCCAGGACTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACTTAGTTTTCATAAGGGCACAATCTCCCAGGACTTATGC  400

seq1  TGAGAGAATAGAATGTTTTAATAAATTTGGCAGGTAAAATAATGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATAGAATGTTTTAATAAATTTGGCAGGTAAAATAATGATGTTT  450

seq1  GATATGAGTAACAGTGTTATCGTTTATGTAGTACAGGAAATTTGATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGTAACAGTGTTATCGTTTATGTAGTACAGGAAATTTGATTACT  500

seq1  TGAACCTGTGAATAACCTGACAGCCATACCTGCTCTTCATTTACTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGTGAATAACCTGACAGCCATACCTGCTCTTCATTTACTTTCTC  550

seq1  TGATTTGATATATCTGAAGTTTAACATGGTGGCAAATGCTTATAATCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGATATATCTGAAGTTTAACATGGTGGCAAATGCTTATAATCTTA  600

seq1  GCTATGCAAGATGTTGAGACAAGAAGATCACAAATTCAAGACAACTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAAGATGTTGAGACAAGAAGATCACAAATTCAAGACAACTTAGT  650

seq1  GAGATCATCTCGAAATTAGAGTTTAAGGGGCTGGAGCGGTGGCTCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATCTCGAAATTAGAGTTTAAGGGGCTGGAGCGGTGGCTCAGCAG  700

seq1  TTAAGAGTATATTAAAAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTATATTAAAAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCA  750

seq1  GCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGG  800

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  850

seq1  TCGAAAAAACAAACAAACAAACAAGAGTACATTAAACTGTTCTAGAAATG  900
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TCGAAAAAACAAACAAACAAACAAGAGTACATTAAACTG-TCTAG-AATG  898

seq1  TTCAGTTCCCAGGACCTATGTGAGACGTCTCACCACTGTCTGTAACTCAA  950
       ||||||||||||||||||||||||||||||| |||||||||| |||| |
seq2  -TCAGTTCCCAGGACCTATGTGAGACGTCTCA-CACTGTCTGT-ACTC-A  944

seq1  TCTCCAGAGGTATCTGATGCCTCTGGTATCTCCAGGTACCTGCATATACA  1000
      ||| ||||||||||||||| |||| |||||||   ||| |||||||||||
seq2  TCT-CAGAGGTATCTGATG-CTCT-GTATCTC--AGTA-CTGCATATACA  988

seq1  TGTGTGAACTACATAGAAATACATAAACATACACAAAATTAAAATATTTT  1050
      || ||| ||||||||| |||| || ||||||||| ||  |||   |||||
seq2  TGGGTG-ACTACATAG-AATA-AT-AACATACACGAA--TAA---ATTTT  1029

seq1  TAA-ATAA---TAAAA  1062
      ||| ||||   |||||
seq2  TAATATAAATTTAAAA  1045

seq1: chr19_43572588_43573668
seq2: B6Ng01-050H23.g_70_1130 (reverse)

seq1  TTTTTTTTTCTTTAAAATACTAAAAACTTTTTTAGCATGTTGGTACTGGC  50
      ||||||||||||  ||||||| |||||||||    || || | |||||||
seq2  TTTTTTTTTCTT--AAATACT-AAAACTTTT---ACAAGTGGATACTGGC  44

seq1  ATTGAGACTTAAAGTTGTTTCCTTAATTTAAATAGTTTTGGCACTCCCCC  100
      | |||||  ||||||||||||| |||||| ||||| |||| |||| ||||
seq2  AATGAGAACTAAAGTTGTTTCC-TAATTT-AATAG-TTTGACACT-CCCC  90

seq1  TAGAAGAAAAATTAGAAATTTTTCTAATAAATAAATTTTTATAAAATAAA  150
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TAGAAGAAAAATTAGAAA-TTTTCTAATAAATAAA-TTTTATAAAATAAA  138

seq1  TTTAAAAATAAAAAACTAGAAGAAAAATTCTCTTTCCCTAACAAGAAAAG  200
       |||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  -TTAAAAATAAAAAACTAGAAGAAAA--TCTCTTTCCCTAACAAGAAAAG  185

seq1  TATGCCCTAGTAAGAGTTTACTGGGGAGCCAGTCAGTGGTGGCGCACACC  250
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  TATGCCCTAGTAAGAGTTTACTGGGAAGCCAGTCAGTGGTGGCGCACA-C  234

seq1  TTTAATCCCAGCACGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTAAGGC  284

seq1  CAGCCTGGTTTACAGAGTGAGTTCCAGGACAGTCAGGGATACACAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTTTACAGAGTGAGTTCCAGGACAGTCAGGGATACACAGAGAG  334

seq1  ACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGTGGGGGGTGGTTAC  400
      ||||||||||    ||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTC----AAAAAAAAAAAAAAAAAAAAGGTGGGGGGTGGTTAC  380

seq1  TGGGTAGGACATTTTGGAGGGCCACATTGATCAAAATTGTTTTTTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGACATTTTGGAGGGCCACATTGATCAAAATTGTTTTTTAAGAT  430

seq1  TTATTTATGTGTATGCCTTAGCATATGTAGGTACCCCTGGAAGCCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTGTATGCCTTAGCATATGTAGGTACCCCTGGAAGCCAGAAG  480

seq1  AGGGCGTCAGATCCCCTTGATCTGGAATTCCGGGCAGTTGTGGTTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTCAGATCCCCTTGATCTGGAATTCCGGGCAGTTGTGGTTTCATG  530

seq1  TGGGTGCTAGAAACAGAACCCCAGTCCTCTGCAAGAGCAACAAGCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTAGAAACAGAACCCCAGTCCTCTGCAAGAGCAACAAGCAATGC  580

seq1  TCTTTTGCTCACAACAACCAAGTCTGTCCCCATCAGAGGTACTGGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTCACAACAACCAAGTCTGTCCCCATCAGAGGTACTGGAGTCT  630

seq1  GATGGCTTAAGCCACCCCTAGGGAGAATGCAAGAAACTCTTCCAGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAAGCCACCCCTAGGGAGAATGCAAGAAACTCTTCCAGGGAAG  680

seq1  GCAGCATCCTAGAGCTGAAAGAACAAACCTCAATAAAGGATACAAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCTAGAGCTGAAAGAACAAACCTCAATAAAGGATACAAATGGA  730

seq1  AACAAGCTGCAAGCTAACGTCTAATAACCTTTACCTCGTCCACACCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTGCAAGCTAACGTCTAATAACCTTTACCTCGTCCACACCCAGC  780

seq1  AGCCTGGGGCACCTACAGAGAGTCAGCCCAGCCAGATGGTAGGATCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGCACCTACAGAGAGTCAGCCCAGCCAGATGGTAGGATCTGCA  830

seq1  AGGGCGGAGGGCTTTGCAAAGGAAAGCCAGACCAGGGATAACCACCGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGAGGGCTTTGCAAAGGAAAGCCAGACCAGGGATAACCACCGTTC  880

seq1  CTCTCCGAAGGCAGGAAGCCAGACTGTTTCAGTACCAACAGACTGATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGAAGGCAGGAAGCCAGACTGTTTCAGTACCAACAGACTGATTCA  930

seq1  AAGAAAGGAATGAGGAATGACGGCAGAATGACAGCAACAGTCCAAATTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAATGAGGAATGACGGCAGAATGACAGCAACAGTCCAAATTCT  980

seq1  GGCTCAAGGTCAAAGGTCTTTTTTTAAACTAAAAGGCCCTACTAACAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGGTCAAAGGTCTTTTTTTAAACTAAAAGGCCCTACTAACAGAA  1030

seq1  CAGGGTGTCTTGGTAAGCTTGGAAAGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  CAGGGTGTCTTGGTAAGCTTGGAAAGAATTC  1061