BAC Information

Click to search

BAC

Clone NameB6Ng01-050I17
Chromosome19 (Build37)
Map Location 30,256,008 - 30,257,056
singlet/doubletsinglet
Overlap genenone
Upstream geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917
Downstream geneMbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995, Cstf2t
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050I17.bB6Ng01-050I17.g
ACCDH874454DH874455
length1,0791,040
definitionDH874454|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I17, 5' end.DH874455|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggattaatacttttgaggtgggtgtgtggtcttattcctcaac
tggggaccattcctatccactagatatggtctctataggttctatctccc
ctttgttgagtatttcggctaaagtcctccctgttgggttataggagact
cttgggtccctggaatctgggactttctagtggctaaaccagttccccct
cgcccactgctacacacctactttcaaattcctgaccctctgtacttctc
ccccatctccccccatatctgaactggccactcttctttcctccccctcc
tctctccctcccaggtccctctctccctccacttcccagagattattctc
tttccccaacagtatcaaccaatcagaatccccaaagctaccaggaacta
aaccaccaaccaaagagtacacatcgagtacccgtggctccggctgatat
gtagcagaggatggccttatctggcatcactgggagggggagcccctttg
tcctgtggagttttgatgacccagaataggggaacactaggccgctgaga
caggagtgggtgggcaagcggggaagcatcctcatagaggcagggggaag
ggaggaaaggacaggggacttgtggaggagaaactgggaaaggggataat
atttgaaatttaaataaataaaataaccaacaaaatgaaaaaattatcag
tcaagtctgaaatatattataaaatataaattagacactatgtcctcttt
ccccagatcatctttaaatttccatccaatgtatatgagaagataaggag
aaacatctcagaatatctttcaaccttcagtaaagggaagcacaggacag
gagttgtgtaacaaaagcagttctttggctgagtttactttggcaccctc
taattatatgtgctttctttaagattcttgtaaagtctgtcaatttgtct
gacgatggaacatcatcttagaggtcaaaggtcttttgagagttggaacc
tgtttcagtctgctttgaaatgtttgaaatcactttcaaccaactcccat
ttccttatatttttgtctcatctcgtatg
gaattcccttccttcccctcttcttcaggcataatagaataaacacacat
gctcaacagggaagtgtaaaatcagtggaaactctgtagccagggacaga
gtagaaggtggagttgaaaatttttatcagttcagaagtatggagaaagg
tcacagaccaagactcaggcctctgaaaacacgaacatgtgaccagaaca
ttatagaacactcactgtcccctcaagttactacgagttcaggaaggctc
caataatggtagctgttggatatactgtacagattctctgaaggaatctg
caggaaaccatccagaatatcaaaggagacaaaaaccaaggaagaaatag
aagcccttatcatccttacccatggaaaactaaacacagcctatgttccc
agcaaaatttaaataaataaatccttaatcccttaatctgagttttacat
tatatcatacacacatacacacacacacacacacacacacacacacacac
acacacacacacacggaaatgagagatccaaagacatatctgactttagt
ttagaaataaactggttacttttctttgagtctttttcccttgaactttt
tagcctgaacttagtaacttagtagccaaattctatctcatcaacattta
gtcccagcatctaagagaatatatgaaaaaaatgcatgctttttaaaaaa
cataattttggtgtgttttgtcccagcactcaagacagaactctttgagt
tcaagactagtctggtctacatagtgagaactctaggccagcctgggcta
catagagagagacacccccacccccactgcttctaaaagaaaataattct
tttattttactctatgtgtataagtgtttgtctgcatgtatatgtatgtg
tatcatatatgatgcttgcacatatgaaggaaaaagagggtgtcagtccc
ttagactgaagtaaagaagttttgagctgcacctggggtgctagaaactc
ttctgtaaaagcaggaagtgcttttacacagtgatgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30256008_30257056
seq2: B6Ng01-050I17.g_65_1104

seq1  GAATTCCCTTCCTTCCCCTCTTCTTCAGGCATAATAGAATAAACACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCCTTCCCCTCTTCTTCAGGCATAATAGAATAAACACACAT  50

seq1  GCTCAACAGGGAAGTGTAAAATCAGTGGAAACTCTGTAGCCAGGGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACAGGGAAGTGTAAAATCAGTGGAAACTCTGTAGCCAGGGACAGA  100

seq1  GTAGAAGGTGGAGTTGAAAATTTTTATCAGTTCAGAAGTATGGAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTGGAGTTGAAAATTTTTATCAGTTCAGAAGTATGGAGAAAGG  150

seq1  TCACAGACCAAGACTCAGGCCTCTGAAAACACGAACATGTGACCAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACCAAGACTCAGGCCTCTGAAAACACGAACATGTGACCAGAACA  200

seq1  TTATAGAACACTCACTGTCCCCTCAAGTTACTACGAGTTCAGGAAGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACACTCACTGTCCCCTCAAGTTACTACGAGTTCAGGAAGGCTC  250

seq1  CAATAATGGTAGCTGTTGGATATACTGTACAGATTCTCTGAAGGAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGGTAGCTGTTGGATATACTGTACAGATTCTCTGAAGGAATCTG  300

seq1  CAGGAAACCATCCAGAATATCAAAGGAGACAAAAACCAAGGAAGAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACCATCCAGAATATCAAAGGAGACAAAAACCAAGGAAGAAATAG  350

seq1  AAGCCCTTATCATCCTTACCCATGGAAAACTAAACACAGCCTATGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTATCATCCTTACCCATGGAAAACTAAACACAGCCTATGTTCCC  400

seq1  AGCAAAATTTAAATAAATAAATCCTTAATCCCTTAATCTGAGTTTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTTAAATAAATAAATCCTTAATCCCTTAATCTGAGTTTTACAT  450

seq1  TATATCATACACACATACACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATACACACATACACACACACACACACACACACACACACACACAC  500

seq1  ACACACACACACACGGAAATGAGAGATCCAAAGACATATCTGACTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACGGAAATGAGAGATCCAAAGACATATCTGACTTTAGT  550

seq1  TTAGAAATAAACTGGTTACTTTTCTTTGAGTCTTTTTCCCTTGAACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAAACTGGTTACTTTTCTTTGAGTCTTTTTCCCTTGAACTTTT  600

seq1  TAGCCTGAACTTAGTAACTTAGTAGCCAAATTCTATCTCATCAACATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAACTTAGTAACTTAGTAGCCAAATTCTATCTCATCAACATTTA  650

seq1  GTCCCAGCATCTAAGAGAATATATGAAAAAAATGCATGCTTTTTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCATCTAAGAGAATATATGAAAAAAATGCATGCTTTTTAAAAAA  700

seq1  CATAATTTTGGTGTGTTTTGTCCCAGCACTCAAGACAGAACTCTTTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTGGTGTGTTTTGTCCCAGCACTCAAGACAGAACTCTTTGAGT  750

seq1  TCAAGACTAGTCTGGTCTACATAGTGAGAACTCTAGGCCAGCCTGGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTAGTCTGGTCTACATAGTGAGAACTCTAGGCCAGCCTGGGCTA  800

seq1  CATAGAGAGAGACACCCCCACCCCCACTGCTTCTAAAAGAAAATAATTTC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAGAGAGAGACACCCCCACCCCCACTGCTTCTAAAAGAAAATAA-TTC  849

seq1  TTTTATTTTACTCTATGTGTATAAGTGTTTGTCTGCATGTATATGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTACTCTATGTGTATAAGTGTTTGTCTGCATGTATATGTATGT  899

seq1  GTATCATATATGATTGCTTGCACATATGAAGGACAGAAGAGGGTGTCAGG  950
      ||||||||||||| ||||||||||||||||||| | |||||||||||| |
seq2  GTATCATATATGA-TGCTTGCACATATGAAGGA-AAAAGAGGGTGTCA-G  946

seq1  TCCCTTAGGACTGAAGTTAAAGAAGCTGTGAGCTGCCACCT-GGGTGCTA  999
      ||||||| |||||||| |||||||| | ||||||| ||||| ||||||||
seq2  TCCCTTA-GACTGAAG-TAAAGAAGTTTTGAGCTG-CACCTGGGGTGCTA  993

seq1  GAAACTCTTCTGTAAGAGCAGGAAGTGCTTTTAACCACAGTGATGTCTCT  1049
      ||||||||||||||| |||||||||||||||||  |||||||||| ||||
seq2  GAAACTCTTCTGTAAAAGCAGGAAGTGCTTTTA--CACAGTGATG-CTCT  1040