BAC Information

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BAC

Clone NameB6Ng01-050L19
Chromosome19 (Build37)
Map Location 11,623,200 - 11,623,953
singlet/doubletsinglet
Overlap geneMs4a4d
Upstream gene2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b
Downstream geneLOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L19.bB6Ng01-050L19.g
ACCDH874592DH874593
length905831
definitionDH874592|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L19, 5' end.DH874593|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcagtcaggaggcagagacaggacaatcactataaacttggt
gctggcctgggttacatagtgatttctaggcctgcctgagctagatttct
ggcctcaagaaaatggaggagagatggagggatggagggatggaggatac
ccaatgctctgtctcagtagcttcatagtacatcatcacatcccagtgtt
aatagcatttgattttttaatacattttattagatattttcttcatttac
atttcaaatgttatccccaaagtcccttataccctccccccccccgccct
gttccccaacccacccactcccacttcttggccctggcattcccctatac
tggggcatatgatcttcgcaagaccaagggcctctaccatcacatcccag
tgttaatagcatttgattttcatatttatcatttgacaattgacatgtta
gtctaacacatcagactttcagtttaattatctttaaaatgttgagactg
caggaattatctagtctgtagatcatctaagatgatcatatctaactgag
tgtagagaaaaggctataaagctacagctgggggcctggcccttctgcct
aacaacccaatctgttctgtacaattacagtgccttttctttcacctgct
actcagatgatggggaaatcctccattctggcacatatttctgtctcccg
taaaattgaagggggagacaaagatatggacacctccccaatgatgagcc
actctgaccttagtactttggcttctattagtttattgatttctataaat
ataatttaaaataaatcataataatatcaagtagtagtaaatcttttgga
attattatatttttagttcattttgtttgtttctgtttggggtttttgtt
gttgg
gaattcctttcttttgtttttaacttaaaaattacattatttgtttgttt
gtttgagtggtgtgtgtgtgtgtgtgtgtgtgtgactctgagattctgtc
ttacaccgggcacaacagatgacgtctatttcactctggatttttcctca
tgctggtgaagatgagggaccgaggggaagacgcctcctctgctggtgcc
tgatcttacaaaactatccaagcacctcacgtggaagaggtcaaaggcca
cagaaccttcgccatcccttttgcagaatcgggatagttcctcactgaat
taccaatacttatcctcttaccgatagaaaactgtgcttcccaccactca
tcggtaaagtttttcccttttctttttcctttcttttttgaagcaggtgt
aggcttctaaagaaactcaccactattgcaaagccgagaactcatgaata
actggtctataactctcaagcatcccctgcactgagggacaggagacttt
cctgttttctttatggattgtcgagacacggtttcgctgtatatgctggg
acgcctgagagcgcacattacataccacggttccctggaacccaaaaatc
ctccctccgcagccccccgagtcccggacaaaggggcgaccccaccgcat
ctggcccagagatttcttggagaagttagaaacaaatcggaggggctgat
ttttagaggaaactagcagaagaagacacacccaagcctccctgctggcc
ccatgctgattttttgaacatggtactctgtaaaaaaaatccaatctcct
tcctcttatcccgtaagctcctgaccaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11623200_11623953
seq2: B6Ng01-050L19.b_191_950

seq1  GATACCCAATGCTCTGTCTCAGTAGCTTCATAGTACATCATCACATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAATGCTCTGTCTCAGTAGCTTCATAGTACATCATCACATCCCA  50

seq1  GTGTTAATAGCATTTGATTTTTTAATACATTTTATTAGATATTTTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATAGCATTTGATTTTTTAATACATTTTATTAGATATTTTCTTCA  100

seq1  TTTACATTTCAAATGTTATCCCCAAAGTCCCTTATACCCTCCCCCCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCAAATGTTATCCCCAAAGTCCCTTATACCCTCCCCCCCCCC  150

seq1  GCCCTGTTCCCCAACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCCCCAACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCC  200

seq1  TATACTGGGGCATATGATCTTCGCAAGACCAAGGGCCTCTACCATCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGGGCATATGATCTTCGCAAGACCAAGGGCCTCTACCATCACAT  250

seq1  CCCAGTGTTAATAGCATTTGATTTTCATATTTATCATTTGACAATTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTTAATAGCATTTGATTTTCATATTTATCATTTGACAATTGACA  300

seq1  TGTTAGTCTAACACATCAGACTTTCAGTTTAATTATCTTTAAAATGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCTAACACATCAGACTTTCAGTTTAATTATCTTTAAAATGTTGA  350

seq1  GACTGCAGGAATTATCTAGTCTGTAGATCATCTAAGATGATCATATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGGAATTATCTAGTCTGTAGATCATCTAAGATGATCATATCTAA  400

seq1  CTGAGTGTAGAGAAAAGGCTATAAAGCTACAGCT-GTGGCCTGGCCC-TC  448
      |||||||||||||||||||||||||||||||||| | |||||||||| ||
seq2  CTGAGTGTAGAGAAAAGGCTATAAAGCTACAGCTGGGGGCCTGGCCCTTC  450

seq1  TGCCTAACAAACCCAATCTGTTCTGTACAATTACAGTGCC-TTTCTTTCA  497
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TGCCTAAC-AACCCAATCTGTTCTGTACAATTACAGTGCCTTTTCTTTCA  499

seq1  CCTGCTACTCAGATGAT-GGGAAATCCTCCATTCT-GCACATATTTCTGT  545
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CCTGCTACTCAGATGATGGGGAAATCCTCCATTCTGGCACATATTTCTGT  549

seq1  CTCCAGTAAAATTGAA-GGGGAGACAAAGATATGTACAC--TCCCAATGA  592
      |||| ||||||||||| ||||||||||||||||| ||||   ||||||||
seq2  CTCCCGTAAAATTGAAGGGGGAGACAAAGATATGGACACCTCCCCAATGA  599

seq1  TGAG-CACTCTGACCTTAGTACTTTGTCTTCTATTAGTTTATTGATTTCT  641
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGCCACTCTGACCTTAGTACTTTGGCTTCTATTAGTTTATTGATTTCT  649

seq1  ATAAATATTAATTTAAAATAAATCATAATAATATCAAGTAGTAGTAAATC  691
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATA-TAATTTAAAATAAATCATAATAATATCAAGTAGTAGTAAATC  698

seq1  TTTTGAAATTATTATATTTTTTAGTTCA-TTTGTTTGTTTCTGTTTTGGG  740
      ||||| |||||||||| ||||||||||| |||||||||||||| ||||||
seq2  TTTTGGAATTATTATA-TTTTTAGTTCATTTTGTTTGTTTCTG-TTTGGG  746

seq1  TTTTTTGTTGTTGG  754
       |||||||||||||
seq2  GTTTTTGTTGTTGG  760