BAC Information

Click to search

BAC

Clone NameB6Ng01-050P16
Chromosome19 (Build37)
Map Location 56,651,680 - 56,813,079
singlet/doubletdoublet
Overlap geneNhlrc2, Adrb1
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
Downstream geneEG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050P16.bB6Ng01-050P16.g
ACCDH874758DH874759
length1,12685
definitionDH874758|Mus musculus domesticus DNA, BAC clone: B6Ng01-050P16, 5' end.DH874759|Mus musculus domesticus DNA, BAC clone: B6Ng01-050P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,651,680 - 56,652,821)(56,812,995 - 56,813,079)
sequence
gaattcttgctctgctgtgctagtgctgtctcagagagaggggaagcaat
gctttatgtgtaagattcatgggatctaagaacaaaaaagaaacacggat
cacacaggcttaaggtcaaagtcaggggacagggatctatactttaccca
ccatgaggctgtggaaagcatgtggatatagataaatacagagccagaat
gttcaacgtacagcatttctatcaaaatttgcctggcttaaagttacaat
gtactttatcgagctagataaacataatgaccaaggaatatttaacgttt
catccaggcgctttcccagttactcctcatggtgttgctggttgtttacc
tttgtggtgagaatacatccatcttaccccttaagagaagtcctaacttt
attgacaaatattgccgggtgtggtggcgcacgcctttaatctcagcatt
ccggaggcagaggcaggaggatttctgagttcgaggccagcctggtctac
agagtgagttccaggacatccagagctacacagagaaaccctgtctcgaa
aaaccaaaaaaaaaaaaaaaaaaagacaactattattaagttctaagtca
ggtgatatgtctttgaagagatacatctttattaaccctagctttcaagt
cctgctttaactcagctcctgtctctgcacttaacctaattctgtgacta
tcttgttgtggtttgaatgaggtcttcataaagtggcacctgaatgctca
gttccctgtgggtagaactgtttgggaaagattaggaggcatggccttat
tggaggaggtgccagtggggataaggcttgaggtgcccttcccactttgc
actcactctgtccccgaccccacccaccctctttctgcctcctgctttgg
atcagaagtaacactgagttgctggttcagcaccatgcctgtctgctctg
ctgcacctgctatgatagctacagactttaatcttctggaactgtaatgt
aagccaggccctcttctcctagtaaatcctcccgctatagttactgtgtc
atggtgcgccctcccagcatagaaaagtaaaacaggcaatcatacctccg
caggtggcatacgattcctgactcaa
tttgttttaagagctgtttggacactacagtgatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56651680_56652821
seq2: B6Ng01-050P16.b_48_1173

seq1  GAATTCTTGCTCTGCTGTGCTAGTGCTGTCTCAGAGAGAGGGGAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCTGCTGTGCTAGTGCTGTCTCAGAGAGAGGGGAAGCAAT  50

seq1  GCTTTATGTGTAAGATTCATGGGATCTAAGAACAAAAAAGAAACACGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGTGTAAGATTCATGGGATCTAAGAACAAAAAAGAAACACGGAT  100

seq1  CACACAGGCTTAAGGTCAAAGTCAGGGGACAGGGATCTATACTTTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCTTAAGGTCAAAGTCAGGGGACAGGGATCTATACTTTACCCA  150

seq1  CCATGAGGCTGTGGAAAGCATGTGGATATAGATAAATACAGAGCCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGCTGTGGAAAGCATGTGGATATAGATAAATACAGAGCCAGAAT  200

seq1  GTTCAACGTACAGCATTTCTATCAAAATTTGCCTGGCTTAAAGTTACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACGTACAGCATTTCTATCAAAATTTGCCTGGCTTAAAGTTACAAT  250

seq1  GTACTTTATCGAGCTAGATAAACATAATGACCAAGGAATATTTAACGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTATCGAGCTAGATAAACATAATGACCAAGGAATATTTAACGTTT  300

seq1  CATCCAGGCGCTTTCCCAGTTACTCCTCATGGTGTTGCTGGTTGTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGCGCTTTCCCAGTTACTCCTCATGGTGTTGCTGGTTGTTTACC  350

seq1  TTTGTGGTGAGAATACATCCATCTTACCCCTTAAGAGAAGTCCTAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTGAGAATACATCCATCTTACCCCTTAAGAGAAGTCCTAACTTT  400

seq1  ATTGACAAATATTGCCGGGTGTGGTGGCGCACGCCTTTAATCTCAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATATTGCCGGGTGTGGTGGCGCACGCCTTTAATCTCAGCATT  450

seq1  CCGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  500

seq1  AGAGTGAGTTCCAGGACATCCAGAGCTACACAGAGAAACCCTGTCTCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACATCCAGAGCTACACAGAGAAACCCTGTCTCGAA  550

seq1  AAACCAAAAAAAAAAAAAAAAAAAGACAACTATTATTAAGTTCTAAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAAAAAAAAAAGACAACTATTATTAAGTTCTAAGTCA  600

seq1  GGTGATATGTCTTTGAAGAGATACATCTTTATTAACCCTAGCTTTCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATGTCTTTGAAGAGATACATCTTTATTAACCCTAGCTTTCAAGT  650

seq1  CCTGCTTTAACTCAGCTCCTGTCTCTGCACTTAACCTAATTCTGTGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAACTCAGCTCCTGTCTCTGCACTTAACCTAATTCTGTGACTA  700

seq1  TCTTGTTGTGGTTTGAATGAGGTCTTCATAAAGTGGCACCTGAATGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGTGGTTTGAATGAGGTCTTCATAAAGTGGCACCTGAATGCTCA  750

seq1  GTTCCCTGTGGGTAGAACTGTTTGGGAAAGATTAGGAGGCATGGCCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTGGGTAGAACTGTTTGGGAAAGATTAGGAGGCATGGCCTTAT  800

seq1  TGGAGGAGGTGCCAGTGGGGATAAGGCTTGAGGTGCCCTTCCCACTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGTGCCAGTGGGGATAAGGCTTGAGGTGCCCTTCCCACTTTGC  850

seq1  ACTCACTCTGTCCCCCGACCCCACCCCACCCCTCTTTCTGCCTCCTGCTT  900
      ||||||||||| ||||||||||||||   ||||||||||||||||||| |
seq2  ACTCACTCTGT-CCCCGACCCCACCC--ACCCTCTTTCTGCCTCCTGC-T  896

seq1  TTGGATCAGAAGTAAACACTGAGTTGCTGGTTCAGCACCATGCCTGTCTG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAGAAGT-AACACTGAGTTGCTGGTTCAGCACCATGCCTGTCTG  945

seq1  CCTCTGCTGCACCTGCTATGATAGCTACAGACTTTAATCTTCTGGAACTG  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCTGCTGCACCTGCTATGATAGCTACAGACTTTAATCTTCTGGAACTG  994

seq1  TAATGTAAGCCAGGCCCTCTTCTCCTCAGTAAATTCTCCCGCTATAAGTT  1050
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  TAATGTAAGCCAGGCCCTCTTCTCCT-AGTAAATCCTCCCGCTAT-AGTT  1042

seq1  ACTGTGGTCATGGTGCGCCTTCACAGCAATAGAAAAGTAAAACAGGCATA  1100
      ||||| ||||||||||||| || |||| |||||||||||||||||||| |
seq2  ACTGT-GTCATGGTGCGCCCTCCCAGC-ATAGAAAAGTAAAACAGGCA-A  1089

seq1  TCATCACTCCAGCAGGTGGGCACTACGTATTCCTGAGCTCAA  1142
      ||||  |||| |||||| |||| |||| |||||||| |||||
seq2  TCATACCTCC-GCAGGT-GGCA-TACG-ATTCCTGA-CTCAA  1126

seq1: chr19_56812995_56813079
seq2: B6Ng01-050P16.g_74_158 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACACA  50

seq1  CATCACTGTAGTGTCCAAACAGCTCTTAAAACAAA  85
      |||||||||||||||||||||||||||||||||||
seq2  CATCACTGTAGTGTCCAAACAGCTCTTAAAACAAA  85