BAC Information

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BAC

Clone NameB6Ng01-051C08
Chromosome19 (Build37)
Map Location 25,687,260 - 25,795,864
singlet/doubletdoublet
Overlap geneDmrt3, Dmrt2
Upstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1
Downstream geneEG667806, 1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051C08.bB6Ng01-051C08.g
ACCDH874876DH874877
length513501
definitionDH874876|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C08, 5' end.DH874877|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,795,346 - 25,795,864)(25,687,260 - 25,687,766)
sequence
attgctggagaggacattacagcaatccaagttcccaaatgctaatcaga
gatactttccagtcctctataaaactcacacttctaacaatgtggcattt
tcctagaagaaccattctttctctggggttacagatttcatatctgctca
gagataggttaaaaaggtccttccctttataaagtgataacaaaggatct
aataaagaatcattgtttgggtttgatatgtatacatttacaaagtcaaa
attagaggccttagcaaactgccaaaacaagtttaagttgttatcaatct
atgaaatttttaatctggaaatcaagatgaggatgatgaagttacccagg
aaaagaaatgtcatcaaaactctactatggtgaagaaatgacaccataga
gcgacttaagttcagaaaaaagaaagagtcaaaaatgaagagtgggggat
ggagagaaggaggaaggagaacataggagaaggagagaaaaggcagaagg
aggagggataagt
catgctacccacttttaattttccgttcctggttttcctggctctgggag
tcccctggactagagaagaagaggtcgagttaaaaattcaacttgctatt
ttacagtgcccagctgcctatcagcagctcttaaagagcactaaccttga
gttctgtggtctctgtccaagaggggactcctttagcatcgcgtggttct
caacgggttgtccttctccatagccaaaatgtataaagagccaacaaaac
ccaaagcaaggagaaaagggggtggatgagggcattgaggaggccaagtt
gaggcaggagggcccaagccttaggagaattaaaaggggcaaagaatttc
aagggtgctaaccaggcacggtgcaggatttctctccttctatgttcacg
agctactcagaagtagcctgagccttccaaattgagaacaagtaattgag
agagagggggaaaaaacaagaagaggaggaggaggggaaggaggaggaag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25795346_25795864
seq2: B6Ng01-051C08.b_44_562 (reverse)

seq1  ACTTCTCCCTCCTCCTTCTGCCTTTTCTCTCCTTCTCCTATGTTCTCCTT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCCCTCCTCCTTCTGCCTTTTCTCTCCTTCTCCTATGTTCTCCTT  50

seq1  CCTCCTTCTCTCCATCCCCCACTCTTCATTTTTGACTCTTTCTTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCTCCATCCCCCACTCTTCATTTTTGACTCTTTCTTTTTTCT  100

seq1  GAACTTAAGTCGCTCTATGGTGTCATTTCTTCACCATAGTAGAGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAGTCGCTCTATGGTGTCATTTCTTCACCATAGTAGAGTTTTGA  150

seq1  TGACATTTCTTTTCCTGGGTAACTTCATCATCCTCATCTTGATTTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTTTTCCTGGGTAACTTCATCATCCTCATCTTGATTTCCAGA  200

seq1  TTAAAAATTTCATAGATTGATAACAACTTAAACTTGTTTTGGCAGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTTCATAGATTGATAACAACTTAAACTTGTTTTGGCAGTTTGC  250

seq1  TAAGGCCTCTAATTTTGACTTTGTAAATGTATACATATCAAACCCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTCTAATTTTGACTTTGTAAATGTATACATATCAAACCCAAACA  300

seq1  ATGATTCTTTATTAGATCCTTTGTTATCACTTTATAAAGGGAAGGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTTATTAGATCCTTTGTTATCACTTTATAAAGGGAAGGACCTT  350

seq1  TTTAACCTATCTCTGAGCAGATATGAAATCTGTAACCCCAGAGAAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTATCTCTGAGCAGATATGAAATCTGTAACCCCAGAGAAAGAAT  400

seq1  GGTTCTTCTAGGAAAATGCCACATTGTTAGAAGTGTGAGTTTTATAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTCTAGGAAAATGCCACATTGTTAGAAGTGTGAGTTTTATAGAGG  450

seq1  ACTGGAAAGTATCTCTGATTAGCATTTGGGAACTTGGATTGCTGTAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAGTATCTCTGATTAGCATTTGGGAACTTGGATTGCTGTAATGT  500

seq1  CCTCTCCAGCAATGAATTC  519
      |||||||||||||||||||
seq2  CCTCTCCAGCAATGAATTC  519

seq1: chr19_25687260_25687766
seq2: B6Ng01-051C08.g_67_573

seq1  GAATTCCATGCTACCCACTTTTAATTTTCCGTTCCTGGTTTTCCTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTACCCACTTTTAATTTTCCGTTCCTGGTTTTCCTGGCTC  50

seq1  TGGGAGTCCCCTGGACTAGAGAAGAAGAGGTCGAGTTAAAAATTCAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCCCCTGGACTAGAGAAGAAGAGGTCGAGTTAAAAATTCAACTT  100

seq1  GCTATTTTACAGTGCCCAGCTGCCTATCAGCAGCTCTTAAAGAGCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTACAGTGCCCAGCTGCCTATCAGCAGCTCTTAAAGAGCACTAA  150

seq1  CCTTGAGTTCTGTGGTCTCTGTCCAAGAGGGGACTCCTTTAGCATCGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTTCTGTGGTCTCTGTCCAAGAGGGGACTCCTTTAGCATCGCGT  200

seq1  GGTTCTCAACGGGTTGTCCTTCTCCATAGCCAAAATGTATAAAGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAACGGGTTGTCCTTCTCCATAGCCAAAATGTATAAAGAGCCAA  250

seq1  CAAAACCCAAAGCAAGGAGAAAAGGGGGTGGATGAGGGCATTGAGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAAGCAAGGAGAAAAGGGGGTGGATGAGGGCATTGAGGAGGC  300

seq1  CAAGTTGAGGCAGGAGGGCCCAAGCCTTAGGAGAATTAAAAGGGGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGAGGCAGGAGGGCCCAAGCCTTAGGAGAATTAAAAGGGGCAAAG  350

seq1  AATTTCAAGGGTGCTAACCAGGCACGGTGCAGGATTTCTCTCCTTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAGGGTGCTAACCAGGCACGGTGCAGGATTTCTCTCCTTCTATG  400

seq1  TTCACGAGCTACTCAGAAGTAGCCTGAGCCTTCCAAATTGAGAACAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGAGCTACTCAGAAGTAGCCTGAGCCTTCCAAATTGAGAACAAGTA  450

seq1  ATTGAGAGAGAGGGGGAAAAAACAAGAAGAGGAGGAGGAGGGGAAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGAGAGGGGGAAAAAACAAGAAGAGGAGGAGGAGGGGAAGGAGG  500

seq1  AGGAAGG  507
      |||||||
seq2  AGGAAGG  507