BAC Information

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BAC

Clone NameB6Ng01-051C12
Chromosome19 (Build37)
Map Location 55,463,201 - 55,582,993
singlet/doubletdoublet
Overlap geneVti1a, LOC100043479
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051C12.bB6Ng01-051C12.g
ACCDH874882DH874883
length818912
definitionDH874882|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C12, 5' end.DH874883|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,582,175 - 55,582,993)(55,463,201 - 55,464,119)
sequence
gaattctttcttaatacctagatggcagcgtctccagtgacccacagttg
tttcttattatggcttccctggaaaccatttctgggaaggcacagtttcc
agcacttaactttgtttacaacagacaaacctgcttgtgtggtataaata
ggaatctgtctttaaatgctgctgagaaactaaaaggcagccatgaaaag
gagccatttcctgccctaaaggtggttttcaaagattcttagctacttta
agaatggcagcaaagcataaataataattatcaattgcctcacagtaaga
tagtaattttaaggaaaaaaaattatataaaaagaaaatagaactaggca
gagctgcccttaaaactgtccgtgttaggtccctttaccctggggttatg
aaaccctgccttgtgcgcgcatttgagatgtatatctataactcgctctt
gtccgtgcagataaacctcgccttgtctccccactgcactttgaaaagca
gcttcgcagtcgtctgacttttgatctgggtggcggcgaggcctggccac
ctgcgctgagcatgggctgtaactgagctggctttgtgccgtctcctaac
acagcgagccttttagaactgatgtgtgaatgcgctgatctacagtgcga
gtgttcaatcagaaaaacatggtggtggctgtggaggcgacagtggtggc
agcagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgaatgagacactctca
ccctgggttttgaagttgtccccatctccagcagtaaacgaaacaggtgc
gaaaagccttcctgaccc
gaattcttcatacagaaagctaaaaatcatatctcccatatcctgtgtta
tatattattgcttggttatttctcttattttcctttgtcagcagttgtac
caatttcagtgccgtagttgatgtttctgaggctgtactgtgatagaatt
attggtggtagaatgataatttcaggaattgtattgtccgtgtctttgat
ttgggtgtaacactaatatttatggatttggtgatgcaaccgagcttgca
agcagatggctccgaaggactcttctcccagtcagggtctgttcgtactc
atacggtgaatggtacctcaatttttcacttgcacttcttttaaaaagac
aagaacctatctattcaaggacacagtgtttgttgtatttggaaattcac
tgtgcccgtccttcctcggaatgctctcttcagggtatgttagaggcagg
gctgtagcgcagagggagctgtgccgagctgttggaatcctgcagcccgt
ctttctactttgcccagctcctcacacaagctgagccccgtcagaagctc
ctgtgcagcttcactcacctcctttgaagagggccaagaagagggtgaga
gaaggagtttgggatggagagtggggcagtctgaaagcctgtgcgcctct
gtcgtggatcgcctatcctttaaaggacagcactcacagctgatggacaa
tgaaacagcgcagctgtttccgagaacttgattttagtgagactttagtg
aagaagtttcaaaatgtgaaaggaagcccagctgggaagctgcccctaag
ctgatcatcgtcttggatgtatatgttctctgaaaatgaaacggttgctt
ccctgcttacagcaagtgtgcaggtttcatgcccttgtgacttttgtttc
cctgtgagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55582175_55582993
seq2: B6Ng01-051C12.b_41_858 (reverse)

seq1  GGGTCAGGGAGGCTTTTCGCACCTGTTTCGTTTACTGCTGGAGGTGGGGA  50
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  GGGTCAGGAAGGCTTTTCGCACCTGTTTCGTTTACTGCTGGAGATGGGGA  50

seq1  CAACTTCATAAACCCAGGGTGAGAGTGTCTCCTTCACACACACACACACA  100
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CAACTTCA-AAACCCAGGGTGAGAGTGTCTCATTCACACACACACACACA  99

seq1  CACACACACACCTTCTGCTGCCACCACTGTCGCCTCCACAGCCACCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCTTCTGCTGCCACCACTGTCGCCTCCACAGCCACCACCA  149

seq1  TGTTTTTCTGATTGAACACTCGCACTGTAGATCAGCGCATTCACACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGATTGAACACTCGCACTGTAGATCAGCGCATTCACACATCA  199

seq1  GTTCTAAAAGGCTCGCTGTGTTAGGAGACGGCACAAAGCCAGCTCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAAGGCTCGCTGTGTTAGGAGACGGCACAAAGCCAGCTCAGTTA  249

seq1  CAGCCCATGCTCAGCGCAGGTGGCCAGGCCTCGCCGCCACCCAGATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATGCTCAGCGCAGGTGGCCAGGCCTCGCCGCCACCCAGATCAAA  299

seq1  AGTCAGACGACTGCGAAGCTGCTTTTCAAAGTGCAGTGGGGAGACAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACGACTGCGAAGCTGCTTTTCAAAGTGCAGTGGGGAGACAAGGC  349

seq1  GAGGTTTATCTGCACGGACAAGAGCGAGTTATAGATATACATCTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTATCTGCACGGACAAGAGCGAGTTATAGATATACATCTCAAATG  399

seq1  CGCGCACAAGGCAGGGTTTCATAACCCCAGGGTAAAGGGACCTAACACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACAAGGCAGGGTTTCATAACCCCAGGGTAAAGGGACCTAACACGG  449

seq1  ACAGTTTTAAGGGCAGCTCTGCCTAGTTCTATTTTCTTTTTATATAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAAGGGCAGCTCTGCCTAGTTCTATTTTCTTTTTATATAATTT  499

seq1  TTTTTCCTTAAAATTACTATCTTACTGTGAGGCAATTGATAATTATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTAAAATTACTATCTTACTGTGAGGCAATTGATAATTATTATT  549

seq1  TATGCTTTGCTGCCATTCTTAAAGTAGCTAAGAATCTTTGAAAACCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTGCTGCCATTCTTAAAGTAGCTAAGAATCTTTGAAAACCACCT  599

seq1  TTAGGGCAGGAAATGGCTCCTTTTCATGGCTGCCTTTTAGTTTCTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAGGAAATGGCTCCTTTTCATGGCTGCCTTTTAGTTTCTCAGCA  649

seq1  GCATTTAAAGACAGATTCCTATTTATACCACACAAGCAGGTTTGTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAGACAGATTCCTATTTATACCACACAAGCAGGTTTGTCTGTT  699

seq1  GTAAACAAAGTTAAGTGCTGGAAACTGTGCCTTCCCAGAAATGGTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAGTTAAGTGCTGGAAACTGTGCCTTCCCAGAAATGGTTTCCA  749

seq1  GGGAAGCCATAATAAGAAACAACTGTGGGTCACTGGAGACGCTGCCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCATAATAAGAAACAACTGTGGGTCACTGGAGACGCTGCCATCT  799

seq1  AGGTATTAAGAAAGAATTC  819
      |||||||||||||||||||
seq2  AGGTATTAAGAAAGAATTC  818

seq1: chr19_55463201_55464119
seq2: B6Ng01-051C12.g_66_976

seq1  GAATTCTTCATACAGAAAGCTAAAAATCATATCTCCCATATCCTGTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATACAGAAAGCTAAAAATCATATCTCCCATATCCTGTGTTA  50

seq1  TATATTATTGCTTGGTTATTTCTCTTATTTTCCTTTGTCAGCAGTTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATTGCTTGGTTATTTCTCTTATTTTCCTTTGTCAGCAGTTGTAC  100

seq1  CAATTTCAGTGCCGTAGTTGATGTTTCTGAGGCTGTACTGTGATAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAGTGCCGTAGTTGATGTTTCTGAGGCTGTACTGTGATAGAATT  150

seq1  ATTGGTGGTAGAATGATAATTTCAGGAATTGTATTGTCCGTGTCTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGGTAGAATGATAATTTCAGGAATTGTATTGTCCGTGTCTTTGAT  200

seq1  TTGGGTGTAACACTAATATTTATGGATTTGGTGATGCAACCGAGCTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTAACACTAATATTTATGGATTTGGTGATGCAACCGAGCTTGCA  250

seq1  AGCAGATGGCTCCGAAGGACTCTTCTCCCAGTCAGGGTCTGTTCGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGCTCCGAAGGACTCTTCTCCCAGTCAGGGTCTGTTCGTACTC  300

seq1  ATACGGTGAATGGTACCTCAATTTTTCACTTGCACTTCTTTTAAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTGAATGGTACCTCAATTTTTCACTTGCACTTCTTTTAAAAAGAC  350

seq1  AAGAACCTATCTATTCAAGGACACAGTGTTTGTTGTATTTGGAAATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTATCTATTCAAGGACACAGTGTTTGTTGTATTTGGAAATTCAC  400

seq1  TGTGCCCGTCCTTCCTCGGAATGCTCTCTTCAGGGTATGTTAGAGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCGTCCTTCCTCGGAATGCTCTCTTCAGGGTATGTTAGAGGCAGG  450

seq1  GCTGTAGCGCAGAGGGAGCTGTGCCGAGCTGTTGGAATCCTGCAGCCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCGCAGAGGGAGCTGTGCCGAGCTGTTGGAATCCTGCAGCCCGT  500

seq1  CTTTCTACTTTGCCCAGCTCCTCACACAAGCTGAGCCCCGTCAGAAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTTTGCCCAGCTCCTCACACAAGCTGAGCCCCGTCAGAAGCTC  550

seq1  CTGTGCAGCTTCACTCACCTCCTTTGAAGAGGGCCAAGAAGAGGGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGCTTCACTCACCTCCTTTGAAGAGGGCCAAGAAGAGGGTGAGA  600

seq1  GAAGGAGTTTGGGATGGAGAGTGGGGCAGTCTGAAAGCCTGTGCGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTTGGGATGGAGAGTGGGGCAGTCTGAAAGCCTGTGCGCCTCT  650

seq1  GTCGTGGATCGCCTTTCATTTAAAGGACAGCACGCACAGCTGAGGGACAA  700
      |||||||||||||| || ||||||||||||||| ||||||||| ||||||
seq2  GTCGTGGATCGCCTATCCTTTAAAGGACAGCACTCACAGCTGATGGACAA  700

seq1  TGTAAACAGCGCAGCTG-TTCCGAGAACTTGATTTTAGTTTGACTTTAGT  749
      || |||||||||||||| |||||||||||||||||||||  |||||||||
seq2  TG-AAACAGCGCAGCTGTTTCCGAGAACTTGATTTTAGTGAGACTTTAGT  749

seq1  GAAGAAGTTTCAAAATGTGAAGGGAAGCCCTGCTGGGAAGCTGCCCCTAA  799
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GAAGAAGTTTCAAAATGTGAAAGGAAGCCCAGCTGGGAAGCTGCCCCTAA  799

seq1  GCTGATCATCCTCTTGGGTGTATATTTCCTCTGAAAAAATGAAGCGGTTG  849
      |||||||||| |||||| ||||||| | |||||  |||||||| ||||||
seq2  GCTGATCATCGTCTTGGATGTATATGTTCTCTG--AAAATGAAACGGTTG  847

seq1  CTTCCACTGCTTAGTGCAGAGTGTGCAGGGTTTCATGCCCATTGTGACAT  899
      ||||| |||||||  ||| |||||||| |||||||||||| ||||||| |
seq2  CTTCC-CTGCTTACAGCA-AGTGTGCA-GGTTTCATGCCC-TTGTGAC-T  892

seq1  TTTGTTTCCCTGTTTAGCTC  919
      |||||||||||| | |||||
seq2  TTTGTTTCCCTG-TGAGCTC  911