BAC Information

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BAC

Clone NameB6Ng01-051H06
Chromosome19 (Build37)
Map Location 23,966,830 - 24,157,185
singlet/doubletdoublet
Overlap geneApba1, Gm967, 1700021P04Rik
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream geneTjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051H06.bB6Ng01-051H06.g
ACCDH875089DH875090
length1,0471,123
definitionDH875089|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H06, 5' end.DH875090|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,966,830 - 23,967,875)(24,156,051 - 24,157,185)
sequence
gaattccttctaaagtatctacgatcctagtttagagatatttctctttg
agcagatatgccaatgggcccactcaattgagtagtactctatccataga
cctcggaaaatgcaacccgaagagtatgctaagaacaaactgcctgcgaa
gctttctgtctgggggcttgggagggtgaacgctatacgcaattaaacaa
gtaaatatgtaattacaaattacgatacgtgcgggaagaaaagagtgctg
tcagattactcttaagtttgcaatcatgccttaattgacccagattcagc
agggatcaatagcgagtggttttatgtctgtctgggcgctcggctcggag
ttccattctgaaccactcagcagccactctccttgtttcttccaggcccc
gtggagccaaaatgagcgcgcagtgagccagcgcagcctctcgccagcca
tcccccgacgcccaccatgaaccacttggagggctccgcggaggtggagg
tggccgacgaggcgccaggaggggaggtgaacgagtccgtggaggccgac
ctggagcaccccgaggtggtggagggacagcagccgtcgccatcgccccc
gccgcccgcaggtcacgagcccgaggaccaccgcgggcatcccgctccgc
caccgccgccaccaccgcaggaggaggaggaggaagagcgcggcgagtgc
ctggcgcgctcggccagcaccgagagcggcttccacaaccacacggacac
ggccgagggcgacgtgctcgccgcgggcccgcgacggctacgaggcggag
cgcgcgcaggacgccgacgatgagagcgcctacgccgtgcagtaccggcc
cgaggccgaggagtacacggagcaggcggaggccgagcacgtcgaggcgg
cgcagcggcgcgcgctgcccaaccacctgcacttccactcgctggagcac
gagaagccatgaacgccgcctactcgggttacgtctacacgcaccggctc
ttccaccgcgccgaggacgagccgtacgccgagccctatcgccgact
gaattctttcctccaggggctcagcctagaaagtggacagcatctctctg
ctctgctggtttaagctacagttctctatagcacacccagatctttctac
atactatggacgaaacaagaactagatatctagtcacttcaatcagttct
ggggacagtataatcaactagcccacaccaaaatctacactgatttggat
ccaatctgctgtctgcatttaccatgttcctggccattaactatagccac
ttggcctctctaccccagaaccccactgttctcctgtctaaggagctgcc
cagcaagaaaaggaccccaaatcacagctggacctttagaagtcagatct
agttttttggacacctatgtgaaaatctgatttaagacccttaatctatt
tgtgtgtgtttttgcatgtttatgaggagggcatgcatatctgtgggtag
gggagcatccgtgcatgtgcacatatgggggccagaggacagtcttggct
gccatcccttggatgccattcatttctttctttctttgtttctctttttc
tttcttttaggtagcatctcttgttggtctgggactcagcattagactaa
cctggctcactcgatgccctagagactcttgtttgctcctgtctctcgca
tctgcaccccatggaacccctttgtctctcatgatgtcagttttcatcat
gttgaaaactgttcctgggattatttttccatgtcgctgtgtactggcta
attttgtgtcaatttgacacaagctggagttatcacggagaaaggagctt
cagttggggaaatgcctccatgagatccagctgtggggcactttctcaat
tagtgatctaggaccccttgtgggtgggaccatccctgggctggtagtct
tggttcatagaagagcagctgagcaagccagtgaaagcaagccagtaagt
tacatccctccatgtcctctgctacagctcttgctctgaactgctgagtt
ccatcctggacttcctgggagaacacatgtatgtaagtgtaagctgaaat
aacccttccctcccacttgctctattgtcatgaatctggtgcaggattga
acccatctaagacacactttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23966830_23967875
seq2: B6Ng01-051H06.b_44_1090

seq1  GAATTCCTTCTAAAGTATCTACGATCCTAGTTTAGAGATATTTCTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTAAAGTATCTACGATCCTAGTTTAGAGATATTTCTCTTTG  50

seq1  AGCAGATATGCCAATGGGCCCACTCAATTGAGTAGTACTCTATCCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATATGCCAATGGGCCCACTCAATTGAGTAGTACTCTATCCATAGA  100

seq1  CCTCGGAAAATGCAACCCGAAGAGTATGCTAAGAACAAACTGCCTGCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAAAATGCAACCCGAAGAGTATGCTAAGAACAAACTGCCTGCGAA  150

seq1  GCTTTCTGTCTGGGGGCTTGGGAGGGTGAACGCTATACGCAATTAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTCTGGGGGCTTGGGAGGGTGAACGCTATACGCAATTAAACAA  200

seq1  GTAAATATGTAATTACAAATTACGATACGTGCGGGAAGAAAAGAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATGTAATTACAAATTACGATACGTGCGGGAAGAAAAGAGTGCTG  250

seq1  TCAGATTACTCTTAAGTTTGCAATCATGCCTTAATTGACCCAGATTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTACTCTTAAGTTTGCAATCATGCCTTAATTGACCCAGATTCAGC  300

seq1  AGGGATCAATAGCGAGTGGTTTTATGTCTGTCTGGGCGCTCGGCTCGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCAATAGCGAGTGGTTTTATGTCTGTCTGGGCGCTCGGCTCGGAG  350

seq1  TTCCATTCTGAACCACTCAGCAGCCACTCTCCTTGTTTCTTCCAGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCTGAACCACTCAGCAGCCACTCTCCTTGTTTCTTCCAGGCCCC  400

seq1  GTGGAGCCAAAATGAGCGCGCAGTGAGCCAGCGCAGCCTCTCGCCAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCCAAAATGAGCGCGCAGTGAGCCAGCGCAGCCTCTCGCCAGCCA  450

seq1  TCCCCCGACGCCCACCATGAACCACTTGGAGGGCTCCGCGGAGGTGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGACGCCCACCATGAACCACTTGGAGGGCTCCGCGGAGGTGGAGG  500

seq1  TGGCCGACGAGGCGCCAGGAGGGGAGGTGAACGAGTCCGTGGAGGCCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGACGAGGCGCCAGGAGGGGAGGTGAACGAGTCCGTGGAGGCCGAC  550

seq1  CTGGAGCACCCCGAGGTGGTGGAGGGACAGCAGCCGTCGCCATCGCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCACCCCGAGGTGGTGGAGGGACAGCAGCCGTCGCCATCGCCCCC  600

seq1  GCCGCCCGCAGGTCACGAGCCCGAGGACCACCGCGGGCATCCCGCTCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCCGCAGGTCACGAGCCCGAGGACCACCGCGGGCATCCCGCTCCGC  650

seq1  CACCGCCGCCACCACCGCAGGAGGAGGAGGAGGAAGAGCGCGGCGAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCGCCACCACCGCAGGAGGAGGAGGAGGAAGAGCGCGGCGAGTGC  700

seq1  CTGGCGCGCTCGGCCAGCACCGAGAGCGGCTTCCACAACCACACGGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCGCTCGGCCAGCACCGAGAGCGGCTTCCACAACCACACGGACAC  750

seq1  GGCCGAGGGCGACGTGCTCGCCGC-GGCCCGCGACGGCTACGAGGCGGAG  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCCGAGGGCGACGTGCTCGCCGCGGGCCCGCGACGGCTACGAGGCGGAG  800

seq1  CGCGCGCAGGACGCCGACGATGAGAGCGCCTACGCCGTGCAGTACCGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGCAGGACGCCGACGATGAGAGCGCCTACGCCGTGCAGTACCGGCC  850

seq1  CGAGGCCGAGGAGTACACGGAGCAGGCGGAGGCCGAGCACGTCGAGGCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCGAGGAGTACACGGAGCAGGCGGAGGCCGAGCACGTCGAGGCGG  900

seq1  CGCAGCGGCGCGCGCTGCCCAACCACCTGCACTTCCACTCGCTGGAGCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGGCGCGCGCTGCCCAACCACCTGCACTTCCACTCGCTGGAGCAC  950

seq1  GAGGAAGCCATGAACGCCGCCTACTCGGGCTACGTCTACACGCACCGGCT  999
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GA-GAAGCCATGAACGCCGCCTACTCGGGTTACGTCTACACGCACCGGCT  999

seq1  CTTCCACCGCGCCGAGGACGAGCCGTACGCCGAGCCCTA-CGCCGACT  1046
      ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCCACCGCGCCGAGGACGAGCCGTACGCCGAGCCCTATCGCCGACT  1047

seq1: chr19_24156051_24157185
seq2: B6Ng01-051H06.g_68_1190 (reverse)

seq1  GGGACAGTGTGTCTTAGTTAGGTTTCTATTCCTGCACAAACATCATGACC  50
      |||| |||||||||||| | ||||   | |||||||| |   ||||||| 
seq2  GGGAAAGTGTGTCTTAGATGGGTT--CAATCCTGCACCAGATTCATGACA  48

seq1  AAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACT  100
      |   |||||||  |||||| |||||||  |||||||||||||| ||||| 
seq2  ATAGAGCAAGT--GGGAGGGAAGGGTTATTTCAGCTTACACTTACATACA  96

seq1  GCTGTTCATCACCAAGGAAGT-CAGGACTGGAACTCAAGCAGGTCAGGAA  149
        |||   || || ||||||| ||||| |||||||| ||||| ||||  |
seq2  TGTGT---TCTCCCAGGAAGTCCAGGA-TGGAACTC-AGCAGTTCAG--A  139

seq1  GCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTT  199
      ||| ||||||  ||||||| ||||||||||||| ||||||||||||||||
seq2  GCAAGAGCTGTAGCAGAGGACATGGAGGGATGTAACTTACTGGCTTGCTT  189

seq1  TCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCAAGACTACCAGCCCA  249
      || |||||||||||||| ||||||  ||| ||||||||||||||||||||
seq2  TCACTGGCTTGCTCAGC-TGCTCTTCTAT-GAACCAAGACTACCAGCCCA  237

seq1  GAGATGGTCCCACCCACAAGGGGTCCTAGATCACTAATTGAGAAAGTGCC  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTCCCACCCACAAGGGGTCCTAGATCACTAATTGAGAAAGTGCC  287

seq1  CCACAGCTGGATCTCATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTGGATCTCATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCC  337

seq1  GTGATAACTCCAGCTTGTGTCAAATTGACACAAAATTAGCCAGTACACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACTCCAGCTTGTGTCAAATTGACACAAAATTAGCCAGTACACAG  387

seq1  CGACATGGAAAAATAATCCCAGGAACAGTTTTCAACATGATGAAAACTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATGGAAAAATAATCCCAGGAACAGTTTTCAACATGATGAAAACTGA  437

seq1  CATCATGAGAGACAAAGGGGTTCCATGGGGTGCAGATGCGAGAGACAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAGAGACAAAGGGGTTCCATGGGGTGCAGATGCGAGAGACAGGA  487

seq1  GCAAACAAGAGTCTCTAGGGCATCGAGTGAGCCAGGTTAGTCTAATGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGAGTCTCTAGGGCATCGAGTGAGCCAGGTTAGTCTAATGCTG  537

seq1  AGTCCCAGACCAACAAGAGATGCTACCTAAAAGAAAGAAAAAGAGAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGACCAACAAGAGATGCTACCTAAAAGAAAGAAAAAGAGAAACA  587

seq1  AAGAAAGAAAGAAATGAATGGCATCCAAGGGATGGCAGCCAAGACTGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAATGAATGGCATCCAAGGGATGGCAGCCAAGACTGTCC  637

seq1  TCTGGCCCCCATATGTGCACATGCACGGATGCTCCCCTACCCACAGATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCCATATGTGCACATGCACGGATGCTCCCCTACCCACAGATAT  687

seq1  GCATGCCCTCCTCATAAACATGCAAAAACACACACAAATAGATTAAGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCTCCTCATAAACATGCAAAAACACACACAAATAGATTAAGGGT  737

seq1  CTTAAATCAGATTTTCACATAGGTGTCCAAAAAACTAGATCTGACTTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCAGATTTTCACATAGGTGTCCAAAAAACTAGATCTGACTTCTA  787

seq1  AAGGTCCAGCTGTGATTTGGGGTCCTTTTCTTGCTGGGCAGCTCCTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGCTGTGATTTGGGGTCCTTTTCTTGCTGGGCAGCTCCTTAGA  837

seq1  CAGGAGAACAGTGGGGTTCTGGGGTAGAGAGGCCAAGTGGCTATAGTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAACAGTGGGGTTCTGGGGTAGAGAGGCCAAGTGGCTATAGTTAA  887

seq1  TGGCCAGGAACATGGTAAATGCAGACAGCAGATTGGATCCAAATCAGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGAACATGGTAAATGCAGACAGCAGATTGGATCCAAATCAGTGT  937

seq1  AGATTTTGGTGTGGGCTAGTTGATTATACTGTCCCCAGAACTGATTGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGTGTGGGCTAGTTGATTATACTGTCCCCAGAACTGATTGAAG  987

seq1  TGACTAGATATCTAGTTCTTGTTTCGTCCATAGTATGTAGAAAGATCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGATATCTAGTTCTTGTTTCGTCCATAGTATGTAGAAAGATCTGG  1037

seq1  GTGTGCTATAGAGAACTGTAGCTTAAACCAGCAGAGCAGAGAGATGCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTATAGAGAACTGTAGCTTAAACCAGCAGAGCAGAGAGATGCTGT  1087

seq1  CCACTTTCTAGGCTGAGCCCCTGGAGGAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTAGGCTGAGCCCCTGGAGGAAAGAATTC  1123