BAC Information

Click to search

BAC

Clone NameB6Ng01-052O17
Chromosome19 (Build37)
Map Location 40,467,804 - 40,593,324
singlet/doubletdoublet
Overlap geneSorbs1
Upstream geneCyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052O17.bB6Ng01-052O17.g
ACCDH876128DH876129
length8001,105
definitionDH876128|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O17, 5' end.DH876129|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,592,528 - 40,593,324)(40,467,804 - 40,468,930)
sequence
gaattcttggaagtgacattccattccatcaagtcttttttcttttcttt
ttttatctttcttttcttttcttttcttttcttttcttttcttttctttt
ctttccttctctttcttccttccttcctttctttctttctttctttcttt
ctttctttctttctttctttcttttttttttttttttttgtctttctgtg
gttctgggaatggaacccaggcactgagctatagtatggtatgtgcgtcc
aatgtttatatcagttctatacattttaggcataaattttgccctcccct
gtactgccatgcctagatgagagtctgttcattaaggaaattttgctgtt
tctaaagtttgccactgtcatctagagatctgtcactaaagctgtgcaac
cccagggatagacagaaggaaggctagtgactcaggttgtctgtgcagcc
ttgtttcttcctctcttgattcctcagggagagagatggcctgtgggtga
ctcgagagcttggtgctgactccggtttgtatgcaggactctcctgcttc
atagtttacttctgtttccagtagtagagacactgctgggaacaatctga
ggcacatgaagagaaaatgaggagttactaatgagagtaaattaaactta
agtagatttttttttttttttgttgttttcagtgtgagaggaacagtagt
aaggcctattgagatgagcaggcccaggctgagagtttgtgggcatttac
aatctacataaagaggggcggagggagtaaaactacagaggaatacacta

gaattcacaacacctcgccccacccgtccagaaccataaggacgtccacc
ctcccagactccaggacaacacacctgacttgctttcatgcttcggagat
tcctgggggctcacagggctgctgcttggggttcccctgtaggaagacga
ggcccgaagagtcactgttcctttcccagtgcagattttggtagggtcca
tgtctgaaaaggaaagatccaaacgggagggtgtgagccaagacttctga
gggagcaggatagtccagtccgtgagcagatggttatagcggaggactga
gacgaacctggttacatctaagcctactcttcaaacatctacgaccaatg
agaattaatcggtacagcggtacaccagcattgtgaaattagggaaaaga
ggcaaggtaagctctgaggaaatgcatgagttacaatgtcagctgaaaac
atttaccagtggaaggaagctggctcattccttctacgaaatgaactttg
ggttgctaagcagactactggccagttagtaaggcatggttcacaggaga
gtttgtgaaagggctctcaagcttgctgatccccttctcaccaaaaaaaa
aaaaaaaaaaagcaagctggcaatgtggcacctcggggatgctctcattg
gtgaatacccctgaactacgggacagagggaggtgctgttcacagatggg
agctttcacactcaggcataatgagaaaacaggaaggtggccagacaggc
ttggtcacactcaacagtgtcttctgacctctctatagtctatagactcc
tcactgtccacaggcagaggcaaggtcataccagcctggacatctttagg
aagacccgcaagcagtctcctgattccagggctacatgtccccagtccct
ctgcaatgccttaaaccacagatgatactcagcctatgggagctatcttt
cctatacaaacagacgtgcttttgataagttaatgatgagttggcacgta
tagactggcaacagggactctgataaatgtagcgttatacattgtatacg
tattcattatataaagtgattcataaaaagtgtggtgttgttttccagta
cattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40592528_40593324
seq2: B6Ng01-052O17.b_46_845 (reverse)

seq1  TAGTGTATTTCTCTGTAGTTTTA-TTCCTCCGCCCCTCTTTATGTAGATT  49
      ||||||||| ||||||||||||| | ||||||||||||||||||||||||
seq2  TAGTGTATTCCTCTGTAGTTTTACTCCCTCCGCCCCTCTTTATGTAGATT  50

seq1  GTAAATG-CCACAAACTCTCAGCCTGGGCCTGCTCATCTCAATAGGCCTT  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCCCACAAACTCTCAGCCTGGGCCTGCTCATCTCAATAGGCCTT  100

seq1  ACTACTGTTCCTCTCACACTGAAAACAAC-AAAAAAAAAAAAAATCTACT  147
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTACTGTTCCTCTCACACTGAAAACAACAAAAAAAAAAAAAAATCTACT  150

seq1  TAAGTTTAATTTACTCTCATTAGTAACTCCTCATTTTCTCTTCATGTGCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTTACTCTCATTAGTAACTCCTCATTTTCTCTTCATGTGCC  200

seq1  TCAGATTGTTCCCAGCAGTGTCTCTACTACTGGAAACAGAAGTAAACTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGTTCCCAGCAGTGTCTCTACTACTGGAAACAGAAGTAAACTAT  250

seq1  GAAGCAGGAGAGTCCTGCATACAAACCGGAGTCAGCACCAAGCTCTCGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGAGAGTCCTGCATACAAACCGGAGTCAGCACCAAGCTCTCGAG  300

seq1  TCACCCACAGGCCATCTCTCTCCCTGAGGAATCAAGAGAGGAAGAAACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACAGGCCATCTCTCTCCCTGAGGAATCAAGAGAGGAAGAAACAA  350

seq1  GGCTGCACAGACAACCTGAGTCACTAGCCTTCCTTCTGTCTATCCCTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACAGACAACCTGAGTCACTAGCCTTCCTTCTGTCTATCCCTGGG  400

seq1  GTTGCACAGCTTTAGTGACAGATCTCTAGATGACAGTGGCAAACTTTAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGCTTTAGTGACAGATCTCTAGATGACAGTGGCAAACTTTAGA  450

seq1  AACAGCAAAATTTCCTTAATGAACAGACTCTCATCTAGGCATGGCAGTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAATTTCCTTAATGAACAGACTCTCATCTAGGCATGGCAGTAC  500

seq1  AGGGGAGGGCAAAATTTATGCCTAAAATGTATAGAACTGATATAAACATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGCAAAATTTATGCCTAAAATGTATAGAACTGATATAAACATT  550

seq1  GGACGCACATACCATACTATAGCTCAGTGCCTGGGTTCCATTCCCAGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCACATACCATACTATAGCTCAGTGCCTGGGTTCCATTCCCAGAAC  600

seq1  CACAGAAAGACAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGACAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAG  650

seq1  AAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGAGAAGGAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGAGAAGGAAAG  700

seq1  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGATAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGATAAAA  750

seq1  AAAGAAAAGAAAAAAGACTTGATGGAATGGAATGTCACTTCCAAGAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAAAGACTTGATGGAATGGAATGTCACTTCCAAGAATTC  800

seq1: chr19_40467804_40468930
seq2: B6Ng01-052O17.g_68_1172

seq1  GAATTCACAACACCTCGCCCCACCCGTCCAGAACCATAAGGACGTCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACACCTCGCCCCACCCGTCCAGAACCATAAGGACGTCCACC  50

seq1  CTCCCAGACTCCAGGACAACACACCTGACTTGCTTTCATGCTTCGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACTCCAGGACAACACACCTGACTTGCTTTCATGCTTCGGAGAT  100

seq1  TCCTGGGGGCTCACAGGGCTGCTGCTTGGGGTTCCCCTGTAGGAAGACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGGCTCACAGGGCTGCTGCTTGGGGTTCCCCTGTAGGAAGACGA  150

seq1  GGCCCGAAGAGTCACTGTTCCTTTCCCAGTGCAGATTTTGGTAGGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGAAGAGTCACTGTTCCTTTCCCAGTGCAGATTTTGGTAGGGTCCA  200

seq1  TGTCTGAAAAGGAAAGATCCAAACGGGAGGGTGTGAGCCAAGACTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAAAGGAAAGATCCAAACGGGAGGGTGTGAGCCAAGACTTCTGA  250

seq1  GGGAGCAGGATAGTCCAGTCCGTGAGCAGATGGTTATAGCGGAGGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGATAGTCCAGTCCGTGAGCAGATGGTTATAGCGGAGGACTGA  300

seq1  GACGAACCTGGTTACATCTAAGCCTACTCTTCAAACATCTACGACCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACCTGGTTACATCTAAGCCTACTCTTCAAACATCTACGACCAATG  350

seq1  AGAATTAATCGGTACAGCGGTACACCAGCATTGTGAAATTAGGGAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATCGGTACAGCGGTACACCAGCATTGTGAAATTAGGGAAAAGA  400

seq1  GGCAAGGTAAGCTCTGAGGAAATGCATGAGTTACAATGTCAGCTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTAAGCTCTGAGGAAATGCATGAGTTACAATGTCAGCTGAAAAC  450

seq1  ATTTACCAGTGGAAGGAAGCTGGCTCATTCCTTCTACGAAATGAACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCAGTGGAAGGAAGCTGGCTCATTCCTTCTACGAAATGAACTTTG  500

seq1  GGTTGCTAAGCAGACTACTGGCCAGTTAGTAAGGCATGGTTCACAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTAAGCAGACTACTGGCCAGTTAGTAAGGCATGGTTCACAGGAGA  550

seq1  GTTTGTGAAAGGGCTCTCAAGCTTGCTGATCCCCTTCTCACCAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAAAGGGCTCTCAAGCTTGCTGATCCCCTTCTCACCAAAAAAAA  600

seq1  AAAAAAAAAAAGCAAGCTGGCAATGTGGCACCTCGGGGATGCTCTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCAAGCTGGCAATGTGGCACCTCGGGGATGCTCTCATTG  650

seq1  GTGAATACCCCTGAACTACGGGACAGAGGGAGGTGCTGTTCACAGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACCCCTGAACTACGGGACAGAGGGAGGTGCTGTTCACAGATGGG  700

seq1  AGCTTTCACACTCAGGCATAATGAGAAAACAGGAAGGTGGCCAGACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCACACTCAGGCATAATGAGAAAACAGGAAGGTGGCCAGACAGGC  750

seq1  TTGGTCACACTCAACAGTGTCTTCTGAACCTCTCTATAGTCTATAGACTC  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGGTCACACTCAACAGTGTCTTCTG-ACCTCTCTATAGTCTATAGACTC  799

seq1  CTCACTGTCCACAGGCAGAGGCAAGGTCCATACCAGCCTGGACATCTTTA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCACTGTCCACAGGCAGAGGCAAGGT-CATACCAGCCTGGACATCTTTA  848

seq1  GGAAGACCCGCAAAGCAGTCTCCTGAATCCAGGGCTACATGTCCCCAGTC  900
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GGAAGACCCGC-AAGCAGTCTCCTGATTCCAGGGCTACATGTCCCCAGTC  897

seq1  CCTCTGCAAATGCCTTAAACCACAGATGATACTCAGCCTATGGGAGCAAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCTGC-AATGCCTTAAACCACAGATGATACTCAGCCTATGGGAGCTAT  946

seq1  CTTTCCTATACAAACAGACGTGCTTTTGATAAAGTTTAATGTATGAGTTG  1000
      ||||||||||||||||||||||||||||||||   |||||| ||||||| 
seq2  CTTTCCTATACAAACAGACGTGCTTTTGATAA--GTTAATG-ATGAGTT-  992

seq1  GGCACAGTAATAAGACTGGCAACAGTGACTCTGATAAAATGGTAGCGTTA  1050
      ||||| |||   ||||||||||||| ||||||||||||   |||||||||
seq2  GGCAC-GTA--TAGACTGGCAACAGGGACTCTGATAAA--TGTAGCGTTA  1037

seq1  TAACATTGTTATACGTTATTTCATTATATAAAAGTGATTTCAATAAAAAG  1100
      | |||||| |||||||   |||||||||| |||||||||   ||||||||
seq2  T-ACATTG-TATACGT--ATTCATTATAT-AAAGTGATT--CATAAAAAG  1080

seq1  TGTGTTGTTTGTTTCCAGTTAACATTT  1127
      |||| ||||  ||||||||  ||||||
seq2  TGTGGTGTTGTTTTCCAGT--ACATTT  1105