BAC Information

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BAC

Clone NameB6Ng01-053G19
Chromosome19 (Build37)
Map Location 41,918,561 - 42,065,780
singlet/doubletdoublet
Overlap geneFrat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1
Upstream geneCcnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1
Downstream geneAnkrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053G19.bB6Ng01-053G19.g
ACCDH876473DH876474
length242569
definitionDH876473|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G19, 5' end.DH876474|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,065,539 - 42,065,780)(41,918,561 - 41,919,135)
sequence
gaattccactcttcactgtgggctcctaaaaccggcctcttagaacaaat
agcagcaagtgaggagccaaaccaccactgtaatcatatggacacggcag
agggtctgttcctttcctaatgggctgtcctgagggcaacaaaaaccagg
gtcgaggatggtacaagtacaatgcacacagagctcagtctctctccaat
gcaagggagatgctgtccttgcaggtgggggtgggggttggg
agagacagactgtctccatccccaaaataaggtggagggtgaccaaggaa
gacatgatcatctttggcctccacacacatgaatacatgtactcgtgttc
aaccacaaacacatgaaccaaaaaaaaaaaaaaaaaaaaagttaatataa
aaggggttgggaagagtgcttagtagcagagtgcctgcctggcttctgtg
aagctctgggttcaatctacagcaacacacgcacagtcacaatttcagtg
tctaatggatggtctaacctcagcatcctcgtctctgcagagtatgccta
ccactcggcgtatataaatccatagggtacttacttccaagaatgaggaa
ttttggtttgaatacttcaccctcccaatcatttaggcaggactgttcta
ccagtgagagaagaggagcacagggtgggggtgggggcagggactcgctc
attataacaaagcctgcaggcggcagtagagtgatgctggagtcctccag
cactagtaggtcatcatgttgggtaccatagggggagatggtacacatct
agaggacttggtagcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42065539_42065780
seq2: B6Ng01-053G19.b_41_282 (reverse)

seq1  CCCAACCCCCACCCCCACCTGCAAGGACAGCATCTCCCTTGCATTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCCCACCCCCACCTGCAAGGACAGCATCTCCCTTGCATTGGAGA  50

seq1  GAGACTGAGCTCTGTGTGCATTGTACTTGTACCATCCTCGACCCTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGCTCTGTGTGCATTGTACTTGTACCATCCTCGACCCTGGTTT  100

seq1  TTGTTGCCCTCAGGACAGCCCATTAGGAAAGGAACAGACCCTCTGCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTCAGGACAGCCCATTAGGAAAGGAACAGACCCTCTGCCGTG  150

seq1  TCCATATGATTACAGTGGTGGTTTGGCTCCTCACTTGCTGCTATTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGATTACAGTGGTGGTTTGGCTCCTCACTTGCTGCTATTTGTTC  200

seq1  TAAGAGGCCGGTTTTAGGAGCCCACAGTGAAGAGTGGAATTC  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCCGGTTTTAGGAGCCCACAGTGAAGAGTGGAATTC  242

seq1: chr19_41918561_41919135
seq2: B6Ng01-053G19.g_71_645

seq1  GAATTCAGAGACAGACTGTCTCCATCCCCAAAATAAGGTGGAGGGTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACAGACTGTCTCCATCCCCAAAATAAGGTGGAGGGTGACC  50

seq1  AAGGAAGACATGATCATCTTTGGCCTCCACACACATGAATACATGTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGACATGATCATCTTTGGCCTCCACACACATGAATACATGTACTC  100

seq1  GTGTTCAACCACAAACACATGAACCAAAAAAAAAAAAAAAAAAAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAACCACAAACACATGAACCAAAAAAAAAAAAAAAAAAAAAGTTA  150

seq1  ATATAAAAGGGGTTGGGAAGAGTGCTTAGTAGCAGAGTGCCTGCCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGGGGTTGGGAAGAGTGCTTAGTAGCAGAGTGCCTGCCTGGCT  200

seq1  TCTGTGAAGCTCTGGGTTCAATCTACAGCAACACACGCACAGTCACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGCTCTGGGTTCAATCTACAGCAACACACGCACAGTCACAATT  250

seq1  TCAGTGTCTAATGGATGGTCTAACCTCAGCATCCTCGTCTCTGCAGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTAATGGATGGTCTAACCTCAGCATCCTCGTCTCTGCAGAGTA  300

seq1  TGCCTACCACTCGGCGTATATAAATCCATAGGGTACTTACTTCCAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCACTCGGCGTATATAAATCCATAGGGTACTTACTTCCAAGAAT  350

seq1  GAGGAATTTTGGTTTGAATACTTCACCCTCCCAATCATTTAGGCAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTTGGTTTGAATACTTCACCCTCCCAATCATTTAGGCAGGACT  400

seq1  GTTCTACCAGTGAGAGAAGAGGAGCACAGGGTGGGGGTGGGGGCAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCAGTGAGAGAAGAGGAGCACAGGGTGGGGGTGGGGGCAGGGAC  450

seq1  TCGCTCATTATAACAAAGCCTGCAGGCGGCAGTAGAGTGATGCTGGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATTATAACAAAGCCTGCAGGCGGCAGTAGAGTGATGCTGGAGTC  500

seq1  CTCCAGCACTAGTAGGTCATCATGTTGGGTACCATAGGGGGAGATGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCACTAGTAGGTCATCATGTTGGGTACCATAGGGGGAGATGGTAC  550

seq1  ACAGCTAGAGGACTTGGTAGCAGAG  575
      ||| |||||||||||||||||||||
seq2  ACATCTAGAGGACTTGGTAGCAGAG  575