BAC Information

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BAC

Clone NameB6Ng01-053L16
Chromosome19 (Build37)
Map Location 43,830,023 - 43,968,859
singlet/doubletdoublet
Overlap geneCutc, Abcc2, Dnmbp
Upstream geneHps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15
Downstream geneLOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053L16.bB6Ng01-053L16.g
ACCDH876691DH876692
length1,146710
definitionDH876691|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L16, 5' end.DH876692|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,830,023 - 43,831,180)(43,968,150 - 43,968,859)
sequence
gaattcaggcagcaaaattatgaagtatttatgggagatttgtattaatt
gctagttccttcaagaatgtctgttcatatattttaggagcaggaaatgg
atttcttatggaagtgtgtgtagattcggtggagtccgctgtgaatgcag
aaagaggaggtaaggaaaactagatgatacatgatggctggcaacctttt
gagagtctgaaaatgaatcctatgaactgacctcaaaagctttgcacgtg
ggaggctacagcagaagtgccactatgagttccatgtgagttattgagac
tccattaaaaaaatttaaaaagccttgtcatctctccaatagcaacagtc
ctttcagaaacaactaactagaaaacctactgaagagcttggtgtggtgg
tgcgtgcttacagtcccagcatggtctaatctgtctaatctccccattcc
ccaagcaggccacatttcaagtcaagtgtctataatcctgctaactcatt
aacatgattattttattgcacttgacacaaatttaaaagtttgaaagagt
ttaaagatctcttaggggtctgagcataagagtttagtttggctcccagt
ttgaagcactgaaggcatggcagcagagcgtggtgagacagctgtgtctg
tgtcttacattgtgtctgtagtcaggaaacagaaatggatgctggtgctc
agttggcttcctctctgtttttggtttggaactccagcctatgaaatagt
gctacccacatacaatgtgaatctttacttctcagtgaaacttctctgga
aactccctcaaagatgcactcaagagatgtgtctactaggggaatcctag
tctagtcaaatatgtgttttaatctatcatagttattttatttattggtg
cttattaatgtcctatctttggcttgtgagagccttgtgctgagaccttt
tatacattcccagtagtctgaaagtcttccctatcacattccttcatctc
aaattacttgaaagatactccaaagtaactggtttgcttttaaagcctct
gaggatggaggattgtttttgaaacttgatgttacttctactcttttttc
ctctatactggcttattcctgtccaagcaactcttataattttaaa
gaattcagttaacagattggttggcagccgcctttccctgctgagctagc
ccccgcctctccccatttttaaatagtatctcacacgtagctctagcagg
tctcaagtttcaggatccaccctcctcccagcatcacctgctgcagttag
tacagcgggatagcacagtgcccaactagagtgattaatctttttattgt
tttgctttgttcttaactctgagtctccctatgtatccctggctggccta
aaacttgctgtgtagaccaggctgccacaaactccccagtgctgggataa
aaggtgtgtgtctttctgaaaaggaaattaacctttgtttttagttggat
tagaaataagcaagatcattggattttagacttagaagcagagagaccat
caatgtcctcatttcacacataagaaagtaaccgctggggccgtggagat
gtcttagcagttaacacgggttgctctggaaggggatccaaggtctgttt
ttagcagctacatgatggctggagagcatgggtgtctacactcaaggaca
catgctcaacagagacacacgggtatacaggatcttaaaaataaagtaaa
tcagagagagagagagagagagagagagagagagagagagagaaaagaga
agagaagagaagagaagagaagagaagagagtagaggagaggagaggaga
ggataggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43830023_43831180
seq2: B6Ng01-053L16.b_46_1191

seq1  GAATTCAGGCAGCAAAATTATGAAGTATTTATGGGAGATTTGTATTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGCAAAATTATGAAGTATTTATGGGAGATTTGTATTAATT  50

seq1  GCTAGTTCCTTCAAGAATGTCTGTTCATATATTTTAGGAGCAGGAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCCTTCAAGAATGTCTGTTCATATATTTTAGGAGCAGGAAATGG  100

seq1  ATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAG  150

seq1  AAAGAGGAGGTAAGGAAAACTAGATGATACATGATGGCTGGCAACCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGGTAAGGAAAACTAGATGATACATGATGGCTGGCAACCTTTT  200

seq1  GAGAGTCTGAAAATGAATCCTATGAACTGACCTCAAAAGCTTTGCACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTGAAAATGAATCCTATGAACTGACCTCAAAAGCTTTGCACGTG  250

seq1  GGAGGCTACAGCAGAAGTGCCACTATGAGTTCCATGTGAGTTATTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTACAGCAGAAGTGCCACTATGAGTTCCATGTGAGTTATTGAGAC  300

seq1  TCCATTAAAAAAATTTAAAAAGCCTTGTCATCTCTCCAATAGCAACAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAAAAAAATTTAAAAAGCCTTGTCATCTCTCCAATAGCAACAGTC  350

seq1  CTTTCAGAAACAACTAACTAGAAAACCTACTGAAGAGCTTGGTGTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAAACAACTAACTAGAAAACCTACTGAAGAGCTTGGTGTGGTGG  400

seq1  TGCGTGCTTACAGTCCCAGCATGGTCTAATCTGTCTAATCTCCCCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCTTACAGTCCCAGCATGGTCTAATCTGTCTAATCTCCCCATTCC  450

seq1  CCAAGCAGGCCACATTTCAAGTCAAGTGTCTATAATCCTGCTAACTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGGCCACATTTCAAGTCAAGTGTCTATAATCCTGCTAACTCATT  500

seq1  AACATGATTATTTTATTGCACTTGACACAAATTTAAAAGTTTGAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATTATTTTATTGCACTTGACACAAATTTAAAAGTTTGAAAGAGT  550

seq1  TTAAAGATCTCTTAGGGGTCTGAGCATAAGAGTTTAGTTTGGCTCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCTCTTAGGGGTCTGAGCATAAGAGTTTAGTTTGGCTCCCAGT  600

seq1  TTGAAGCACTGAAGGCATGGCAGCAGAGCGTGGTGAGACAGCTGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCACTGAAGGCATGGCAGCAGAGCGTGGTGAGACAGCTGTGTCTG  650

seq1  TGTCTTACATTGTGTCTGTAGTCAGGAAACAGAAATGGATGCTGGTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACATTGTGTCTGTAGTCAGGAAACAGAAATGGATGCTGGTGCTC  700

seq1  AGTTGGCTTCCTCTCTGTTTTTGGTTTGGAACTCCAGCCTATGAAATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTCCTCTCTGTTTTTGGTTTGGAACTCCAGCCTATGAAATAGT  750

seq1  GCTACCCACATACAATGTGAATCTTTACTTCTCAGTGAAACTTCTCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCACATACAATGTGAATCTTTACTTCTCAGTGAAACTTCTCTGGA  800

seq1  AACTCCCTCAAAGATGCACTCAAGAGATGTGTCTACTAGGGGAATCCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTCAAAGATGCACTCAAGAGATGTGTCTACTAGGGGAATCCTAG  850

seq1  TCTAGTCAAATATGTGTTTTAATCTATCATAGTTATTTTATTTATTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCAAATATGTGTTTTAATCTATCATAGTTATTTTATTTATTGGTG  900

seq1  CTTA-TAATGTCCTATCTTTGGCTTGTGAGAGCCTTGTTGCTGAGACCTT  949
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTATTAATGTCCTATCTTTGGCTTGTGAGAGCCTTG-TGCTGAGACCTT  949

seq1  TTAATACAATCCCAGTAGTCTGAAAGTTCCTTCCCTATCACCATTCCCTT  999
      || ||||| ||||||||||||||||||  ||||||||||| |||| ||||
seq2  TT-ATACATTCCCAGTAGTCTGAAAGT--CTTCCCTATCA-CATT-CCTT  994

seq1  CATCTCAAAATTACCTTGATAGATACTCCAAAGTAACTGGTTTGCTTTTT  1049
      |||||| |||||| ||||| ||||||||||||||||||||||||||||| 
seq2  CATCTC-AAATTA-CTTGAAAGATACTCCAAAGTAACTGGTTTGCTTTTA  1042

seq1  AAAGCTCTGAGGAATGAGGAATGTTTTGAAACCTTGATGTTACTTTCTAC  1099
      ||  |||||||||  ||||| ||||||  || ||||||||||| ||||||
seq2  AAGCCTCTGAGGATGGAGGATTGTTTTTGAAACTTGATGTTAC-TTCTAC  1091

seq1  TCTTTTCTCCT-AATACTGCCTTTATTCCCTGTCCACAGCAACTCTTTAA  1148
      |||||| ||||  |||||| | ||||| |||||||| ||||||||||  |
seq2  TCTTTTTTCCTCTATACTGGC-TTATT-CCTGTCCA-AGCAACTCTT--A  1136

seq1  TATTTTTAAA  1158
      || |||||||
seq2  TAATTTTAAA  1146

seq1: chr19_43968150_43968859
seq2: B6Ng01-053L16.g_69_778 (reverse)

seq1  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCTTCTCTTCTCTTCTCT  50
      | |||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TATCCTATCCTCTCCTCTCCTCTCCTCTACTCTCTTCTCTTCTCTTCTCT  50

seq1  TCTCTTCTCTTCTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTCTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTGATTTACTTTATTTTTAAGATCCTGTATACCCGTGTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGATTTACTTTATTTTTAAGATCCTGTATACCCGTGTGTCTCT  150

seq1  GTTGAGCATGTGTCCTTGAGTGTAGACACCCATGCTCTCCAGCCATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCATGTGTCCTTGAGTGTAGACACCCATGCTCTCCAGCCATCATG  200

seq1  TAGCTGCTAAAAACAGACCTTGGATCCCCTTCCAGAGCAACCCGTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTAAAAACAGACCTTGGATCCCCTTCCAGAGCAACCCGTGTTAA  250

seq1  CTGCTAAGACATCTCCACGGCCCCAGCGGTTACTTTCTTATGTGTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGACATCTCCACGGCCCCAGCGGTTACTTTCTTATGTGTGAAAT  300

seq1  GAGGACATTGATGGTCTCTCTGCTTCTAAGTCTAAAATCCAATGATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTGATGGTCTCTCTGCTTCTAAGTCTAAAATCCAATGATCTTG  350

seq1  CTTATTTCTAATCCAACTAAAAACAAAGGTTAATTTCCTTTTCAGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTAATCCAACTAAAAACAAAGGTTAATTTCCTTTTCAGAAAGA  400

seq1  CACACACCTTTTATCCCAGCACTGGGGAGTTTGTGGCAGCCTGGTCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTTTTATCCCAGCACTGGGGAGTTTGTGGCAGCCTGGTCTACA  450

seq1  CAGCAAGTTTTAGGCCAGCCAGGGATACATAGGGAGACTCAGAGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTTTAGGCCAGCCAGGGATACATAGGGAGACTCAGAGTTAAGA  500

seq1  ACAAAGCAAAACAATAAAAAGATTAATCACTCTAGTTGGGCACTGTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAAACAATAAAAAGATTAATCACTCTAGTTGGGCACTGTGCTA  550

seq1  TCCCGCTGTACTAACTGCAGCAGGTGATGCTGGGAGGAGGGTGGATCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTGTACTAACTGCAGCAGGTGATGCTGGGAGGAGGGTGGATCCTG  600

seq1  AAACTTGAGACCTGCTAGAGCTACGTGTGAGATACTATTTAAAAATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGACCTGCTAGAGCTACGTGTGAGATACTATTTAAAAATGGGG  650

seq1  AGAGGCGGGGGCTAGCTCAGCAGGGAAAGGCGGCTGCCAACCAATCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGGGGGCTAGCTCAGCAGGGAAAGGCGGCTGCCAACCAATCTGTT  700

seq1  AACTGAATTC  710
      ||||||||||
seq2  AACTGAATTC  710