BAC Information

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BAC

Clone NameB6Ng01-054C07
Chromosome19 (Build37)
Map Location 16,526,657 - 16,640,681
singlet/doubletdoublet
Overlap geneGna14, LOC666665
Upstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438
Downstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054C07.bB6Ng01-054C07.g
ACCDH876976DH876977
length1,0591,163
definitionDH876976|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C07, 5' end.DH876977|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,526,657 - 16,527,724)(16,639,503 - 16,640,681)
sequence
gaattccatgagataggcaatatatggggccccttttttgcattcgttca
gctgccaggcaatgaccaagaagaaagagcaagcacacacacatgttttt
atctttgtaccattgaagcactcatatttttgtgggtcctggcattttga
tatatgcctaaaaagctgtaatctcataatttgcaatggctcttgtagcc
catagacattttttcctagaatgacttagtaatgccaagaaagcatattc
tagaacaattgagatatatctattgatcatctttttatcactatcaatca
ccaatcatctatctatctatctatctatctatctatctatctatctatct
atctatctatcttctttttgaaaacccactcacatggaatatttggttga
ttatttcttctcatataatcatgcttttttcaaagtatagtggcttatgg
taatgtcatattttgtatgatttttagtgaatgcgaggagaaggtaagat
tcattttcttgaaaggccccttctgcattgccatgttgatcaccatccca
tgactcaggtgcttccacagcagtgctccctgcagcctgccgtgcataag
gcctacaggaactcgcctatcttttaaatgtgtttcccatgagcatggaa
ttgggaatgtaagctaattgcactactaaccagaatcagataaacaaagg
tgacaaaccagaagcatcatctaatctttacagtagtgagacagtgcctg
tcagactgcccaagcagggctgcatacacagaacagcctagatgctggcc
acatagacactcacagctctgtagcatccttgattctattggtcataaaa
aaccccacaaatcttaattcttaatacagtctgaaagctccttcccattg
tttggtagggaggatctggatgagtgaggagatgacaatgggctgggtgg
ccactagtgacttggaatcaaagccagatgaggagtagccccgttctacc
ctcctcatgagtcttccatctcagctcattctgggttccgtggacagcat
tgacctcta
gaattccttgcttatttagagccctggcctagagttttaaggaccattat
agactctttagatcagttatttgagttctcaatctttggaggaatccaac
gaccctttcacaggggtcacatattagatatcctgaatatcagatgttta
tattatgattcataacactaggaaagttacagttatgaagcagcaaagaa
aataattttatggttgcagtcaccacaacataaggagctgtattaagggc
ctcagcattaggaaggttgagaagcagtgccttaagtgttccttcttccc
cgagtcagcaggaacaggagtatctagagggtcttccaggataaaaatgt
tttatccctaccatgtcattgctagtcctgggatgttcttagcatactat
ccttccatgatttcataatcacattgacacgacatcccgtcacagtgacc
ctagaggtaaaggctgagactcaaagcttcaagtgctaactgatgccctt
ccacctctacaccctgggctgctgcttccactcaggggatacgggcagag
cccggagctcagtcatggggaagccagctaaaaacagatgccataagaca
agaaagcaggaggaagacctggatctggcagagtcaggatcattttacgg
ctgaacttcctgggcaagttcattcatgagaaagggatgaaggggcatcc
tgatggcagaagggacatcagagctagacctcagaggaaaaatttacctt
tccaggaagctgttgcttttaattgaaagaaaatcagtgaagtgcttaca
atgcatcgagattcaccacactgtatgcgtgacatggaatatgcttagtg
ctacttgaagaatatttttagagaacagaaagatgcacagaagagtatga
gacatgcttggcaccacgtcctgcttctgtcagtactcactttcggtctt
cacatcacatgaagttcatagatgggtttctactctctctagaagttgct
ctgtttctgaaggtgcactagcatttctaatagaatctgaacaggaggga
gcatgggctagactaggcccttgcacatacatagcatggggcagttggtc
ttcacgcaggtcccccacagctaagcagaagcgtctggactctatttcct
gcttggatactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16526657_16527724
seq2: B6Ng01-054C07.b_48_1106

seq1  GAATTCCATGAGATAGGCAATATATGGGGCCCCTTTTTTGCATTCGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGATAGGCAATATATGGGGCCCCTTTTTTGCATTCGTTCA  50

seq1  GCTGCCAGGCAATGACCAAGAAGAAAGAGCAAGCACACACACATGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGCAATGACCAAGAAGAAAGAGCAAGCACACACACATGTTTTT  100

seq1  ATCTTTGTACCATTGAAGCACTCATATTTTTGTGGGTCCTGGCATTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTACCATTGAAGCACTCATATTTTTGTGGGTCCTGGCATTTTGA  150

seq1  TATATGCCTAAAAAGCTGTAATCTCATAATTTGCAATGGCTCTTGTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTAAAAAGCTGTAATCTCATAATTTGCAATGGCTCTTGTAGCC  200

seq1  CATAGACATTTTTTCCTAGAATGACTTAGTAATGCCAAGAAAGCATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATTTTTTCCTAGAATGACTTAGTAATGCCAAGAAAGCATATTC  250

seq1  TAGAACAATTGAGATATATCTATTGATCATCTTTTTATCACTATCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATTGAGATATATCTATTGATCATCTTTTTATCACTATCAATCA  300

seq1  CCAATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  350

seq1  ATCTATCTATCTTCTTTTTGAAAACCCACTCACATGGAATATTTGGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTTCTTTTTGAAAACCCACTCACATGGAATATTTGGTTGA  400

seq1  TTATTTCTTCTCATATAATCATGCTTTTTTCAAAGTATAGTGGCTTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTCTCATATAATCATGCTTTTTTCAAAGTATAGTGGCTTATGG  450

seq1  TAATGTCATATTTTGTATGATTTTTAGTGAATGCGAGGAGAAGGTAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCATATTTTGTATGATTTTTAGTGAATGCGAGGAGAAGGTAAGAT  500

seq1  TCATTTTCTTGAAAGGCCCCTTCTGCATTGCCATGTTGATCACCATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTGAAAGGCCCCTTCTGCATTGCCATGTTGATCACCATCCCA  550

seq1  TGACTCAGGTGCTTCCACAGCAGTGCTCCCTGCAGCCTGCCGTGCATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGGTGCTTCCACAGCAGTGCTCCCTGCAGCCTGCCGTGCATAAG  600

seq1  GCCTACAGGAACTCGCCTATCTTTTAAATGTGTTTCCCATGAGCATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGGAACTCGCCTATCTTTTAAATGTGTTTCCCATGAGCATGGAA  650

seq1  TTGGGAATGTAAGCTAATTGCACTACTAACCAGAATCAGATAAACAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATGTAAGCTAATTGCACTACTAACCAGAATCAGATAAACAAAGG  700

seq1  TGACAAACCAGAAGCATCATCTAATCTTTACAGTAGTGAGACAGTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACCAGAAGCATCATCTAATCTTTACAGTAGTGAGACAGTGCCTG  750

seq1  TCAGACTGCCCAAGCAGGGCTGCATACACAGAACAGCCTAGATGCTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGCCCAAGCAGGGCTGCATACACAGAACAGCCTAGATGCTGGCC  800

seq1  ACATAGACACTCACAGCTCTGTAGCATCCTTGATTCTATTGGTCATAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATAGACACTCACAGCTCTGTAGCATCCTTGATTCTATTGGTCAT-AAA  849

seq1  AAACCCCACAAATCTTAATTCTTAATACAGTCTGAAAGCTCCTTCCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAAATCTTAATTCTTAATACAGTCTGAAAGCTCCTTCCCATT  899

seq1  GTTTGGTAGGGAGGATCTGGATGAGTGAGGAGATGACAATGGGCTGGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTAGGGAGGATCTGGATGAGTGAGGAGATGACAATGGGCTGGGTG  949

seq1  GCCACTAGTGACTTGGAATCAAAGCCCAGATTGAGGAGTAGCCCCGTTTC  1000
      |||||||||||||||||||||||| ||||| ||||||||||||||| |||
seq2  GCCACTAGTGACTTGGAATCAAAG-CCAGA-TGAGGAGTAGCCCCG-TTC  996

seq1  TACCCTCCTTCATTGAGTTCTCCATCTTCATGCTCAATTTCTTGGTTTCT  1050
      |||||||| ||| |||||  |||||| ||| |||||  |||| |||| | 
seq2  TACCCTCC-TCA-TGAGTCTTCCATC-TCA-GCTCA--TTCTGGGTTCCG  1040

seq1  GTGACAGCATTGA-CTCTA  1068
        ||||||||||| |||||
seq2  TGGACAGCATTGACCTCTA  1059

seq1: chr19_16639503_16640681
seq2: B6Ng01-054C07.g_67_1229 (reverse)

seq1  ACAGTATCCACAGGCAGGCAATAGAGTCAAGGACAGCTCCTGCTCTAGCT  50
      ||||||||  || ||||| ||||||||| | ||| ||| ||||| |||||
seq2  ACAGTATC--CAAGCAGGAAATAGAGTCCA-GAC-GCTTCTGCT-TAGCT  45

seq1  GTTGGGGGACCTGCGTGAAGACCAAACTGCACATTGCTATGTATGTGCAA  100
      | ||||||||||||||||||||| |||||| |  ||||||||||||||||
seq2  G-TGGGGGACCTGCGTGAAGACC-AACTGCCCCATGCTATGTATGTGCAA  93

seq1  GGGGCCTAGGTCTAGCCCATGCTCACTCCTTGGTTCAGATTCTTATTAGA  150
       ||||||| ||||||||||||||| |||||  |||||||||| |||||||
seq2  -GGGCCTA-GTCTAGCCCATGCTCCCTCCT--GTTCAGATTC-TATTAGA  138

seq1  AATGCTAGTGCACCTTTCAGAAACAGAGCAACTTCTAGAGAGAAGTAGAA  200
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AATGCTAGTGCACC-TTCAGAAACAGAGCAACTTCTAGAGAG-AGTAGAA  186

seq1  AACCATCTATGGAACTTCATGTGATGTGAAGACCGAAAGTGAGTACTGAC  250
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTAT-GAACTTCATGTGATGTGAAGACCGAAAGTGAGTACTGAC  235

seq1  AGAAGCAGGACGGTGGTGCCAAGCATGTCTCATACTCTTCTGTGCATCTT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGAC-GTGGTGCCAAGCATGTCTCATACTCTTCTGTGCATCTT  284

seq1  TCTGTTCTCTAAAAATATTCTTCAAGTAGCACTAAGCATATTCCATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCTAAAAATATTCTTCAAGTAGCACTAAGCATATTCCATGTCA  334

seq1  CGCATACAGTGTGGTGAATCTCGATGCATTGTAAGCACTTCACTGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATACAGTGTGGTGAATCTCGATGCATTGTAAGCACTTCACTGATTTT  384

seq1  CTTTCAATTAAAAGCAACAGCTTCCTGGAAAGGTAAATTTTTCCTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATTAAAAGCAACAGCTTCCTGGAAAGGTAAATTTTTCCTCTGAG  434

seq1  GTCTAGCTCTGATGTCCCTTCTGCCATCAGGATGCCCCTTCATCCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCTCTGATGTCCCTTCTGCCATCAGGATGCCCCTTCATCCCTTTC  484

seq1  TCATGAATGAACTTGCCCAGGAAGTTCAGCCGTAAAATGATCCTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATGAACTTGCCCAGGAAGTTCAGCCGTAAAATGATCCTGACTCT  534

seq1  GCCAGATCCAGGTCTTCCTCCTGCTTTCTTGTCTTATGGCATCTGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCCAGGTCTTCCTCCTGCTTTCTTGTCTTATGGCATCTGTTTTT  584

seq1  AGCTGGCTTCCCCATGACTGAGCTCCGGGCTCTGCCCGTATCCCCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTCCCCATGACTGAGCTCCGGGCTCTGCCCGTATCCCCTGAGT  634

seq1  GGAAGCAGCAGCCCAGGGTGTAGAGGTGGAAGGGCATCAGTTAGCACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCAGCCCAGGGTGTAGAGGTGGAAGGGCATCAGTTAGCACTTG  684

seq1  AAGCTTTGAGTCTCAGCCTTTACCTCTAGGGTCACTGTGACGGGATGTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGAGTCTCAGCCTTTACCTCTAGGGTCACTGTGACGGGATGTCG  734

seq1  TGTCAATGTGATTATGAAATCATGGAAGGATAGTATGCTAAGAACATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATGTGATTATGAAATCATGGAAGGATAGTATGCTAAGAACATCCC  784

seq1  AGGACTAGCAATGACATGGTAGGGATAAAACATTTTTATCCTGGAAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGCAATGACATGGTAGGGATAAAACATTTTTATCCTGGAAGACC  834

seq1  CTCTAGATACTCCTGTTCCTGCTGACTCGGGGAAGAAGGAACACTTAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATACTCCTGTTCCTGCTGACTCGGGGAAGAAGGAACACTTAAGG  884

seq1  CACTGCTTCTCAACCTTCCTAATGCTGAGGCCCTTAATACAGCTCCTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTCTCAACCTTCCTAATGCTGAGGCCCTTAATACAGCTCCTTAT  934

seq1  GTTGTGGTGACTGCAACCATAAAATTATTTTCTTTGCTGCTTCATAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTGACTGCAACCATAAAATTATTTTCTTTGCTGCTTCATAACTG  984

seq1  TAACTTTCCTAGTGTTATGAATCATAATATAAACATCTGATATTCAGGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCTAGTGTTATGAATCATAATATAAACATCTGATATTCAGGAT  1034

seq1  ATCTAATATGTGACCCCTGTGAAAGGGTCGTTGGATTCCTCCAAAGATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATATGTGACCCCTGTGAAAGGGTCGTTGGATTCCTCCAAAGATTG  1084

seq1  AGAACTCAAATAACTGATCTAAAGAGTCTATAATGGTCCTTAAAACTCTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAATAACTGATCTAAAGAGTCTATAATGGTCCTTAAAACTCTA  1134

seq1  GGCCAGGGCTCTAAATAAGCAAGGAATTC  1179
      |||||||||||||||||||||||||||||
seq2  GGCCAGGGCTCTAAATAAGCAAGGAATTC  1163