BAC Information

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BAC

Clone NameB6Ng01-054G23
Chromosome19 (Build37)
Map Location 49,694,153 - 49,834,853
singlet/doubletdoublet
Overlap geneLOC629448
Upstream geneSorcs3, LOC100042896
Downstream geneSiah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054G23.bB6Ng01-054G23.g
ACCDH877179DH877180
length1,095532
definitionDH877179|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G23, 5' end.DH877180|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,694,153 - 49,695,258)(49,834,316 - 49,834,853)
sequence
gaattctatgctaaggaaaatgaaatcatgatatttgcaggtaaatggat
ggaactgaaaaatatgacactgagtgaggtaatcctgatccagaaagaca
aacgccatgtgctctctctgatttatggctccttgctctacatctccgtg
tgggaatatataacctggagtaactgcagaagccagaaaagtatttctct
caaaaaaggagttgttcttaaaagtggaactgcaaggtgatctaatgagg
tgcagtttttatacttacagtgagagaggagtgtggttaagttaaactca
tcctggccctaggtaagtcgtgtctctctgaagtgttatataggaaacca
aggattatctctgtgagtcattcacgtttcattaatcctgctgaagtgtc
tgatgtgcagcttgcagcgtatgtgtactctgtccccgagtatgaggtca
cactccctccccttgccaccccccacctccccctggctttatatgcagcc
tcagcaggaaacgcctttagtttttcccagtgtcatatgacatgaactgt
ggatttatcttgcacagtgctaattgtctggaggttatgccttctatact
tcatttttttcaatgtttcagtgtgaaggaatattgaaatctctcaaatt
atttttttcctctttatattgaaattatatggtttgaattttgttctatt
aatgtgatatgtctcatttataaacttgcatggtgtgactcattcctgct
tcctagggaaaatacttttaatatgcgggtgattttggtgtctaaatgtt
tttctggggatttttttatttactcatcaagaatatttgacgtataattc
tctgtctttgtgggacacccatgaatcccaacaagatctgtgcactgttt
tctgagatctgcagtggggtttctgagatatgagcaaagatggccctggt
gggttggggagaggcacagccttcaccatcttgacgcagtctatgagctc
aaatgccaagaattgatggtggccatcgaaggaagtgtctcaggtcaggc
agaatcttgatatgatttgaagagattggcctaataatttgggtt
aagtggctcgtgtaatacaaaatgaaaaatggttgtctgcctggtgaggt
actgagaacttgataccttctcagtctatgaaactagatttgttaagagg
ccaaatatattattaaatgcaggaaggattcctggagagccactgatcct
taatccacatttgaatgctaaagaagctatattccatggtcatagaatga
aggcatcagcagtggcaggtgcagagaccatgcacttaccagctaggcat
aaaagtgcacaggcaaacacatattggtctaccctctggacttctgttgg
aaggtaacactcactcttgtggagggtcttctagcccccaggtaattccc
ccaggagctccacctataatcctaatacttgagaaactgggtctagagta
tgtagagtgctgagtgcttagtcaacctgagctgtatagtaagaccctat
ttcagaagagaaagaaaaaaataacaaagaaagaaaaggaaaagaaagaa
ggatggatgagggagggaagagggagggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49694153_49695258
seq2: B6Ng01-054G23.b_47_1141

seq1  GAATTCTATGCTAAGGAAAATGAAATCATGATATTTGCAGGTAAATGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTAAGGAAAATGAAATCATGATATTTGCAGGTAAATGGAT  50

seq1  GGAACTGAAAAATATGACACTGAGTGAGGTAATCCTGATCCAGAAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAAAAATATGACACTGAGTGAGGTAATCCTGATCCAGAAAGACA  100

seq1  AACGCCATGTGCTCTCTCTGATTTATGGCTCCTTGCTCTACATCTCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCATGTGCTCTCTCTGATTTATGGCTCCTTGCTCTACATCTCCGTG  150

seq1  TGGGAATATATAACCTGGAGTAACTGCAGAAGCCAGAAAAGTATTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATATAACCTGGAGTAACTGCAGAAGCCAGAAAAGTATTTCTCT  200

seq1  CAAAAAAGGAGTTGTTCTTAAAAGTGGAACTGCAAGGTGATCTAATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGAGTTGTTCTTAAAAGTGGAACTGCAAGGTGATCTAATGAGG  250

seq1  TGCAGTTTTTATACTTACAGTGAGAGAGGAGTGTGGTTAAGTTAAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTTATACTTACAGTGAGAGAGGAGTGTGGTTAAGTTAAACTCA  300

seq1  TCCTGGCCCTAGGTAAGTCGTGTCTCTCTGAAGTGTTATATAGGAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCCTAGGTAAGTCGTGTCTCTCTGAAGTGTTATATAGGAAACCA  350

seq1  AGGATTATCTCTGTGAGTCATTCACGTTTCATTAATCCTGCTGAAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATCTCTGTGAGTCATTCACGTTTCATTAATCCTGCTGAAGTGTC  400

seq1  TGATGTGCAGCTTGCAGCGTATGTGTACTCTGTCCCCGAGTATGAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCAGCTTGCAGCGTATGTGTACTCTGTCCCCGAGTATGAGGTCA  450

seq1  CACTCCCTCCCCTTGCCACCCCCCACCTCCCCCTGGCTTTATATGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTCCCCTTGCCACCCCCCACCTCCCCCTGGCTTTATATGCAGCC  500

seq1  TCAGCAGGAAACGCCTTTAGTTTTTCCCAGTGTCATATGACATGAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAAACGCCTTTAGTTTTTCCCAGTGTCATATGACATGAACTGT  550

seq1  GGATTTATCTTGCACAGTGCTAATTGTCTGGAGGTTATGCCTTCTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATCTTGCACAGTGCTAATTGTCTGGAGGTTATGCCTTCTATACT  600

seq1  TCATTTTTTTCAATGTTTCAGTGTGAAGGAATATTGAAATCTCTCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTCAATGTTTCAGTGTGAAGGAATATTGAAATCTCTCAAATT  650

seq1  ATTTTTTTCCTCTTTATATTGAAATTATATGGTTTGAATTTTGTTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCTCTTTATATTGAAATTATATGGTTTGAATTTTGTTCTATT  700

seq1  AATGTGATATGTCTCATTTATAAACTTGCATGGTGTGACTCATTCCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATATGTCTCATTTATAAACTTGCATGGTGTGACTCATTCCTGCT  750

seq1  TCCTAGGGAAAATACTTTTAATATGCGGGTGATTTTGGTGTCTAAATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGAAAATACTTTTAATATGCGGGTGATTTTGGTGTCTAAATGTT  800

seq1  TTTCTGGGGATTTTTTTATTTACTCATCAAGAATATTTGACGTATAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGGATTTTTTTATTTACTCATCAAGAATATTTGACGTATAATTC  850

seq1  TCTGTCTTTGTGGGACACCCATGAATCCCAACAAGATCTGTGCACTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGTGGGACACCCATGAATCCCAACAAGATCTGTGCACTGTTT  900

seq1  TCTGAGATCTGCAGTGGGGTTTCTGAGATATGAGGCAAAGATGGCCCTGG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTGAGATCTGCAGTGGGGTTTCTGAGATATGA-GCAAAGATGGCCCTGG  949

seq1  TGGG-TGGGGAGAGGGCACAGCCTTCACCATCTTGACGGCAGTCTATGAA  999
      |||| |||||||| ||||||||||||||||||||||| |||||||||| |
seq2  TGGGTTGGGGAGA-GGCACAGCCTTCACCATCTTGAC-GCAGTCTATG-A  996

seq1  GCTCAGATGCCAAGAATTGATGGGTGGCCATACAGAAAGAAAGTGTCTCC  1049
      ||||| ||||||||||||||| |||||||||     ||| ||||||||| 
seq2  GCTCAAATGCCAAGAATTGAT-GGTGGCCAT---CGAAGGAAGTGTCTC-  1041

seq1  AGGGTCAGGGCAGAATCTTGATATGGTTTTGAGAGTATGGGCTAAATAAT  1099
        ||||| ||||||||||||||||| |||  |||| || |||  ||||||
seq2  -AGGTCA-GGCAGAATCTTGATATGATTTGAAGAG-ATTGGCCTAATAAT  1088

seq1  TTTGGTT  1106
      || ||||
seq2  TTGGGTT  1095

seq1: chr19_49834316_49834853
seq2: B6Ng01-054G23.g_65_602 (reverse)

seq1  TCTTCCCTCCCTCTTCCCTCCCTCATCCATCCTTCTTTCTTTTCCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCCTCTTCCCTCCCTCATCCATCCTTCTTTCTTTTCCTTTTC  50

seq1  TTTCTTTGTTATTTTTTTCTTTCTCTTCTGAAATAGGGTCTTACTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTATTTTTTTCTTTCTCTTCTGAAATAGGGTCTTACTATACA  100

seq1  GCTCAGGTTGACTAAGCACTCAGCACTCTACATACTCTAGACCCAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTTGACTAAGCACTCAGCACTCTACATACTCTAGACCCAGTTTC  150

seq1  TCAAGTATTAGGATTATAGGTGGAGCTCCTGGGGGAATTACCTGGGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTAGGATTATAGGTGGAGCTCCTGGGGGAATTACCTGGGGGCT  200

seq1  AGAAGACCCTCCACAAGAGTGAGTGTTACCTTCCAACAGAAGTCCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCTCCACAAGAGTGAGTGTTACCTTCCAACAGAAGTCCAGAGG  250

seq1  GTAGACCAATATGTGTTTGCCTGTGCACTTTTATGCCTAGCTGGTAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAATATGTGTTTGCCTGTGCACTTTTATGCCTAGCTGGTAAGTG  300

seq1  CATGGTCTCTGCACCTGCCACTGCTGATGCCTTCATTCTATGACCATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTCTGCACCTGCCACTGCTGATGCCTTCATTCTATGACCATGGA  350

seq1  ATATAGCTTCTTTAGCATTCAAATGTGGATTAAGGATCAGTGGCTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTTCTTTAGCATTCAAATGTGGATTAAGGATCAGTGGCTCTCCA  400

seq1  GGAATCCTTCCTGCATTTAATAATATATTTGGCCTCTTAACAAATCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTTCCTGCATTTAATAATATATTTGGCCTCTTAACAAATCTAGT  450

seq1  TTCATAGACTGAGAAGGTATCAAGTTCTCAGTACCTCACCAGGCAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGACTGAGAAGGTATCAAGTTCTCAGTACCTCACCAGGCAGACAA  500

seq1  CCATTTTTCATTTTGTATTACACGAGCCACTTGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTCATTTTGTATTACACGAGCCACTTGAATTC  538