BAC Information

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BAC

Clone NameB6Ng01-055K14
Chromosome19 (Build37)
Map Location 16,130,831 - 16,268,433
singlet/doubletdoublet
Overlap geneGnaq, E030024N20Rik
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055K14.bB6Ng01-055K14.g
ACCDH878045DH878046
length1,1181,114
definitionDH878045|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K14, 5' end.DH878046|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,130,831 - 16,131,548)(16,267,313 - 16,268,433)
sequence
gaattctttgcaggtcttctgtagagctaactttgtggttgtgaattcct
ttagtctgtttttattgtgcaaatattttctttctccttcaattgtggca
ggtagttttgtgagtttaacagtttgggctgacagttgtctttcagagtt
tgagatacatttatttattatccacgcatgtgttactgtacacaggcatg
tgtgacagtgggagcatggctgtcagaggacaacttaaagaacttggttc
ttgtcttcccccaaggtgactttcagagatcttactcaagatataaggtg
gcaagtacccttccttgctgagccactcaccagcccagaatactcgtctg
aaactccctggctttcagagttaatgttgagaaatctaaagctgtttgat
gtgcttctgcaagtgatttggtatttctctcctgaaatcttcagcgtact
ttctttgctccgtaaagtgttttaaagtatgctataacatgacatggaga
tattcttttccagtctcgtttggtgttacaaaggcctcttgcatctagat
gggcatgtctttccttagatttgaggagtttgcatctatgattttattga
aaatattttcctagtatttttatctttcatctatacccacagttcataga
cttggtctttcctgtgtcacatagacttgaatgtcctctcatgctctccc
aaagtctgtatgctctgattctcccaacctgtcttctaatttgataatct
gtcatacccatgatgtgctggtgaagctttccacactgctttttctttgg
tatatttaggtttctttctgtcaaatatttcaggctcttacatttttcta
tttcttgaattctactttcctattctctattgacttccttattgcattca
gttctttatattttgagtctgcatcttctttgggttctttgaacagactt
atcatttatcaaaggtttcattggaatttattctcatggagaacttgtaa
aatagtaatttttaaaataatttatttatgtatatggagtgctctatctg
catgaccctgtgcacagaagaaggcatcgaaccccattaccgaatgaatt
gtgaactcatcaggtggt
gaattcacttaaggttttactagtataaaaatgaaaaaattaaaacaaga
atttaatatgcccacttcaaaatgcttgataaagttatgaattaatttaa
acctactttatagagtataaatctttagatttttagcacataaagcgggc
ttctcagccagatgtgatggtgcacatgcactcccagcactcaggagaag
caggcaggagaatcaggagtgcaagctcattcttctttaaacaaaaaaaa
caaaactaaaactaaaattaggaaatggaaaagaatgtttgtctaaaaca
ttcagaaggcactctgaattttagatttgactaaagtctaatacactgat
ggcgtgtgtttcctctatagaccctaccgtggtgtttcctcacattttca
atgggtccaggaatagaaaacatctacaataaagaaaacacatcatataa
agctttttattattatcattattatttcttttttcattattatttcttaa
agaaatttttaaaaattatgttatcttcattatttaacattaataacata
cctattaaagtattaatttgccagtctttgttctaaagtttgatatattg
ataaattttaccctcccaggcaatttgtgaaattattttctcattttata
tagaaagcctgcatggtgggaaatttgctggtgggaatttaaggtcccag
gcctgcagctgtccacctgtctgtcccactcatgtatgctacgcaactgt
ttcctccttcatgtcatgagagttagcacagagcttcaaacctcagatta
ctacctgcccacagggcccacaactgatgccatacatctgagggggccct
agagaccctggctcatgcagttatggagtctttctcagcatctaggactt
attcacttcagcctcccttcatggtaaaccatggagctttaggaaggatt
agaaggaaaacatgttttccattcactctcacccagagtaagatggaggt
agtaggatccattcttgcattatgtataccaaaagaagaataagtcttca
tctgcatcactgggcccaggagcccagggaaatcatgtaaaaaaaaagat
tccactgaaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16130831_16131548
seq2: B6Ng01-055K14.b_448_1162

seq1  CTTCTGCAAGTGATTTGGTATTTCTCTCCTGAAATCTTCAGCGTACTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAAGTGATTTGGTATTTCTCTCCTGAAATCTTCAGCGTACTTTC  50

seq1  TTTGCTCCGTAAAGTGTTTTAAAGTATGCTATAACATGACATGGAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCGTAAAGTGTTTTAAAGTATGCTATAACATGACATGGAGATAT  100

seq1  TCTTTTCCAGTCTCGTTTGGTGTTACAAAGGCCTCTTGCATCTAGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAGTCTCGTTTGGTGTTACAAAGGCCTCTTGCATCTAGATGGG  150

seq1  CATGTCTTTCCTTAGATTTGAGGAGTTTGCATCTATGATTTTATTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTCCTTAGATTTGAGGAGTTTGCATCTATGATTTTATTGAAAA  200

seq1  TATTTTCCTAGTATTTTTATCTTTCATCTATACCCACAGTTCATAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTAGTATTTTTATCTTTCATCTATACCCACAGTTCATAGACTT  250

seq1  GGTCTTTCCTGTGTCACATAGACTTGAATGTCCTCTCATGCTCTCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCCTGTGTCACATAGACTTGAATGTCCTCTCATGCTCTCCCAAA  300

seq1  GTCTGTATGCTCTGATTCTCCCAACCTGTCTTCTAATTTGATAATCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATGCTCTGATTCTCCCAACCTGTCTTCTAATTTGATAATCTGTC  350

seq1  ATACCCATGATGTGCTGGTGAAGCTTTCCACACTGCTTTTTCTTTGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATGATGTGCTGGTGAAGCTTTCCACACTGCTTTTTCTTTGGTAT  400

seq1  ATTTAGGTTTCTTTCTGTCAAATATTTCAAGCTCTTACATTTTTCTATTT  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTAGGTTTCTTTCTGTCAAATATTTCAGGCTCTTACATTTTTCTATTT  450

seq1  CTTGAATTCTACTTTCCTATTCTCTATTGACTTCCTTATTGCATTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTCTACTTTCCTATTCTCTATTGACTTCCTTATTGCATTCAGTT  500

seq1  CTTTATATTTTGAGTCTGCATCTTCTTTGGTTTCTTTGAACAGACTTATC  550
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTATATTTTGAGTCTGCATCTTCTTTGGGTTCTTTGAACAGACTTATC  550

seq1  ATTTATCAAAGGTTTCATT-GAATTTATTCTCATTGGAGAACTTGTAAAA  599
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ATTTATCAAAGGTTTCATTGGAATTTATTCTCA-TGGAGAACTTGTAAAA  599

seq1  TTAGTAATTTTTAAAAATTAATTTATTTTATGTATAT-GAGTGCTCTATC  648
       |||||||||||||||  ||||||| ||||||||||| ||||||||||||
seq2  -TAGTAATTTTTAAAA--TAATTTA-TTTATGTATATGGAGTGCTCTATC  645

seq1  TGCATGGACACCTGTGCACCAGAAGAGGGCATCAGACCCCATTACAG-AT  697
      ||||| ||| |||||||| ||||||| ||||||  |||||||||| | ||
seq2  TGCAT-GAC-CCTGTGCA-CAGAAGAAGGCATCGAACCCCATTACCGAAT  692

seq1  G-ATTGTGAAC-CATCATGTGGT  718
      | ||||||||| ||||| |||||
seq2  GAATTGTGAACTCATCAGGTGGT  715

seq1: chr19_16267313_16268433
seq2: B6Ng01-055K14.g_68_1181 (reverse)

seq1  CCTCC-TCAGTGTGAATCTTTTTTTTTTACATGATTTCCCTTGGTGCTCC  49
      ||||| |||||| ||||| ||||||||||||||||||||||  | |||||
seq2  CCTCCTTCAGTG-GAATC-TTTTTTTTTACATGATTTCCCT--GGGCTCC  46

seq1  TGGGGCCCAGTTGTGCAGATGAGGACTTATTCTTCTCTATGTAATACATA  99
      | |||||||||  ||||||||| ||||||||||||| | ||  |||||||
seq2  T-GGGCCCAGTGATGCAGATGAAGACTTATTCTTCT-TTTGGTATACATA  94

seq1  ATGCAGAGATGGATCCTACTACCCTCCATCTTCCTCCTGGGTGAGAGTTG  149
      |||||   ||||||||||||| |||||||||| || ||||||||||| ||
seq2  ATGCAAGAATGGATCCTACTA-CCTCCATCTTACT-CTGGGTGAGAG-TG  141

seq1  AATGG-AAACATGTTTTCCCTTCTAATCCTTCTTAAGGCT-CATGGTTTA  197
      ||||| ||||||||||| |||||||||||||| ||| ||| |||||||||
seq2  AATGGAAAACATGTTTT-CCTTCTAATCCTTCCTAAAGCTCCATGGTTTA  190

seq1  CCATTGAAGGGAGGCTGAAGTG-ATAAGT-CTAGATGCTGAGAAAAGACT  245
      ||| |||||||||||||||||| |||||| |||||||||||| |||||||
seq2  CCA-TGAAGGGAGGCTGAAGTGAATAAGTCCTAGATGCTGAG-AAAGACT  238

seq1  CCATAACTGCATGAGCCAGGGTCTCTAGGGCCCCCTCAGATGTATGGCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTGCATGAGCCAGGGTCTCTAGGGCCCCCTCAGATGTATGGCAT  288

seq1  CAGTTGTGGGCCCTGTGGGCAGGTAGTAATCTGAGGTTTGAAGCTCTGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGGGCCCTGTGGGCAGGTAGTAATCTGAGGTTTGAAGCTCTGTG  338

seq1  CTAACTCTCATGACATGAAGGAGGAAACAGTTGCGTAGCATACATGAGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTCATGACATGAAGGAGGAAACAGTTGCGTAGCATACATGAGTG  388

seq1  GGACAGACAGGTGGACAGCTGCAGGCCTGGGACCTTAAATTCCCACCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGGTGGACAGCTGCAGGCCTGGGACCTTAAATTCCCACCAGC  438

seq1  AAATTTCCCACCATGCAGGCTTTCTATATAAAATGAGAAAATAATTTCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCACCATGCAGGCTTTCTATATAAAATGAGAAAATAATTTCAC  488

seq1  AAATTGCCTGGGAGGGTAAAATTTATCAATATATCAAACTTTAGAACAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTGGGAGGGTAAAATTTATCAATATATCAAACTTTAGAACAAA  538

seq1  GACTGGCAAATTAATACTTTAATAGGTATGTTATTAATGTTAAATAATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAAATTAATACTTTAATAGGTATGTTATTAATGTTAAATAATGA  588

seq1  AGATAACATAATTTTTAAAAATTTCTTTAAGAAATAATAATGAAAAAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACATAATTTTTAAAAATTTCTTTAAGAAATAATAATGAAAAAAGA  638

seq1  AATAATAATGATAATAATAAAAAGCTTTATATGATGTGTTTTCTTTATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGATAATAATAAAAAGCTTTATATGATGTGTTTTCTTTATTG  688

seq1  TAGATGTTTTCTATTCCTGGACCCATTGAAAATGTGAGGAAACACCACGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTTTCTATTCCTGGACCCATTGAAAATGTGAGGAAACACCACGG  738

seq1  TAGGGTCTATAGAGGAAACACACGCCATCAGTGTATTAGACTTTAGTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTATAGAGGAAACACACGCCATCAGTGTATTAGACTTTAGTCAA  788

seq1  ATCTAAAATTCAGAGTGCCTTCTGAATGTTTTAGACAAACATTCTTTTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATTCAGAGTGCCTTCTGAATGTTTTAGACAAACATTCTTTTCC  838

seq1  ATTTCCTAATTTTAGTTTTAGTTTTGTTTTTTTTGTTTAAAGAAGAATGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAATTTTAGTTTTAGTTTTGTTTTTTTTGTTTAAAGAAGAATGA  888

seq1  GCTTGCACTCCTGATTCTCCTGCCTGCTTCTCCTGAGTGCTGGGAGTGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACTCCTGATTCTCCTGCCTGCTTCTCCTGAGTGCTGGGAGTGCA  938

seq1  TGTGCACCATCACATCTGGCTGAGAAGCCCGCTTTATGTGCTAAAAATCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCATCACATCTGGCTGAGAAGCCCGCTTTATGTGCTAAAAATCT  988

seq1  AAAGATTTATACTCTATAAAGTAGGTTTAAATTAATTCATAACTTTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATACTCTATAAAGTAGGTTTAAATTAATTCATAACTTTATCA  1038

seq1  AGCATTTTGAAGTGGGCATATTAAATTCTTGTTTTAATTTTTTCATTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTGAAGTGGGCATATTAAATTCTTGTTTTAATTTTTTCATTTTT  1088

seq1  ATACTAGTAAAACCTTAAGTGAATTC  1121
      ||||||||||||||||||||||||||
seq2  ATACTAGTAAAACCTTAAGTGAATTC  1114