BAC Information

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BAC

Clone NameB6Ng01-059A02
Chromosome19 (Build37)
Map Location 4,637,343 - 4,794,148
singlet/doubletdoublet
Overlap geneGm960, Spnb3, Rbm4b, Rbm4
Upstream geneLrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1
Downstream geneRbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A02.bB6Ng01-059A02.g
ACCDH880428DH880429
length1,1381,121
definitionDH880428|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A02, 5' end.DH880429|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,792,992 - 4,794,148)(4,637,343 - 4,638,488)
sequence
gaattccgcgtttctagctccaccttcagatggacctcttgcccaatcag
tggcttcagtttcactaggctgggtgctcattggctttcatataaaaggt
ccaggttactgacgtttccacctcttcctggcctctcaggtaattggcgt
tccgggtaaccaatcaggaagaggatctccgggaacgccagccttttact
ttaccgaacggccaatccggtgggtaggttcacccctctttctacccaga
gtcactgctgtggccgccgccattttagcgttttgtcagaaccgtccgcg
ctgcaaggaggaggacctgcaggtatccatgcggtgagatactccacgtt
cttccactgtgttcttttctctgttaaaaaaacttacctgactccggtgg
gtgtcagggttggcatagtggggttgcggtctgcgcacccgtccctgaga
gccgacatcggtcctcgacttagtgcggtaagcctgaaacaaccttcctc
caagtcctcgttctctactcccggaatagctttcttttgtccaccttacc
ctctgctttgctcaatcttctttggggtttccacctagataaatcttaga
tttaggctggagaatctgtcatgccctgggcattgttggcttcctcacca
aactgtagcaccagtctttgaccagttcttctgtaggagcctgtaatgac
atgccccacccccacccccaccccagaggactcctcctactcgggcattt
tctatatttccctgctttttatctggttgatcccggaactcactactccg
agtgaaattcccacttttccggaaatggttgctaagagaggaagagctaa
tttgaagtattataattagcaagtctagtagttagaatcttgttttcaat
gtcaaagtgagtagctctcagtacctgtagcatttttttatttatgctga
aacttagagcgttattcctttgtctggggcaggggaagtgtactcagtgg
cgatacttgctatatgtacgtgctgtaggtggagcccccgcaatcccctt
gtctacaaagcctgcctgttactttttccttttaagaacttcttgtgaga
aataaaagacaggcccttggtggactcacacatttgtt
gaattcactggggacccaagggaagtgctgtagaggcaagaactgtgact
tctttactgtgctcagttatctctctgggagcttggaaggcagagaaggg
cctgagatgcttggcatgtgagacccatgtcttcccacctaagcaagatt
cttctcccaagacctttgtctacagcagacgaatattgcagagatccctc
tgtctcatgactgggttgaaaggattctcttctttgagatgagtgagaaa
gcagccatcccattgagcagtgaggctgaggaaggggtgggaagtgtctg
atgagcccttggggagaagagaaccagagagcacagtccccacccaggag
actgagttcatcaatgcgctcagccttggatgccttagtacagaactgta
gacatccgttaaaggacgtgaggatcctgctaaaaccatgtgctaagtta
gagaaagatttgtctttaggtgtttttgcatgttggaagctgtgtgtgtg
caggttcctgagagcctagaagaggcattaatgtcctggagccaatagtg
agctacttgatgtggattcatggaactaaatgtggatcctccggaagagt
agcacattatcttatgacagctgagccatttctccagctcctacatatta
attttatagatgagaaattgaaattcagaaagaagtggccccttaagatc
aggtaggacaaaagccagggccacttcttcctaccccatcatccgcacac
acaaaggtgaagcgatgactgaaggttcttacttgcttataaaggcaagg
tttctgtgctactaaagtacttttttctaggaaacagttttagacaaata
agatatcacaattaaaggtattaattgaagcactatttacatacagcata
aattaccagtgtaaaagcccacactagaggatgaattattaaattagatt
agtaataaagtacactatttatacaaatcaattctatcttgttgaaattg
gtaaattcaatttataccaaaaatatatttcctggtttcactatgtaaat
ggatggtgaaaatttaaatggagtaatagattagtactaagttttctatg
gactattatctttaagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4792992_4794148
seq2: B6Ng01-059A02.b_45_1182 (reverse)

seq1  AACAAATGTG-GAGTTCAACAAGAGCCTG-CTTCTATTTCTCACAAGAAG  48
      |||||||||| |||| || |||| ||||| ||| ||||||||||||||||
seq2  AACAAATGTGTGAGTCCACCAAGGGCCTGTCTTTTATTTCTCACAAGAAG  50

seq1  TTCTATAAAGAGGAAAAATGTAACAAGGCAGACTTTTGTAGACAAAGGGG  98
      |||| |||| |||||||| ||||| |||||| | ||||||||| ||||||
seq2  TTCT-TAAA-AGGAAAAA-GTAAC-AGGCAGGC-TTTGTAGAC-AAGGGG  94

seq1  ATTTTGCGGTGTGGCTCCAACCTACAGCACGGTACATTATAGGCAAGTAT  148
      |  |||||  | |||||| ||||||||||| ||||| |||| ||||||||
seq2  A--TTGCG--GGGGCTCC-ACCTACAGCAC-GTACA-TATA-GCAAGTAT  136

seq1  TCCGCCACTGAGTTACACTTCCCCTGCCCCAGACAAAGGAATAACGCTCT  198
        |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  --CGCCACTGAG-TACACTTCCCCTGCCCCAGACAAAGGAATAACGCTCT  183

seq1  AAGTTTTCAGCATAAATAAAAAAAATGCTACAGGTACTGAGAGCTACTCA  248
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAG-TTTCAGCATAAAT-AAAAAAATGCTACAGGTACTGAGAGCTACTCA  231

seq1  CTTTGACATTTGAAAACAAGATTCTAACTACTAGACTTGCTAATTATAAT  298
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTGACA-TTGAAAACAAGATTCTAACTACTAGACTTGCTAATTATAA-  279

seq1  TACTTCAAATTAGCTCTTCCTCTCTTAGCAACCATTTCCGGAAAAGTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAATTAGCTCTTCCTCTCTTAGCAACCATTTCCGGAAAAGTGGG  329

seq1  AATTTCACTCGGAGTAGTGAGTTCCGGGATCAACCAGATAAAAAGCAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACTCGGAGTAGTGAGTTCCGGGATCAACCAGATAAAAAGCAGGG  379

seq1  AAATATAGAAAATGCCCGAGTAGGAGGAGTCCTCTGGGGTGGGGGTGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAAAATGCCCGAGTAGGAGGAGTCCTCTGGGGTGGGGGTGGGG  429

seq1  GTGGGGCATGTCATTACAGGCTCCTACAGAAGAACTGGTCAAAGACTGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCATGTCATTACAGGCTCCTACAGAAGAACTGGTCAAAGACTGGT  479

seq1  GCTACAGTTTGGTGAGGAAGCCAACAATGCCCAGGGCATGACAGATTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTTGGTGAGGAAGCCAACAATGCCCAGGGCATGACAGATTCTC  529

seq1  CAGCCTAAATCTAAGATTTATCTAGGTGGAAACCCCAAAGAAGATTGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAAATCTAAGATTTATCTAGGTGGAAACCCCAAAGAAGATTGAGC  579

seq1  AAAGCAGAGGGTAAGGTGGACAAAAGAAAGCTATTCCGGGAGTAGAGAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGGGTAAGGTGGACAAAAGAAAGCTATTCCGGGAGTAGAGAAC  629

seq1  GAGGACTTGGAGGAAGGTTGTTTCAGGCTTACCGCACTAAGTCGAGGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTGGAGGAAGGTTGTTTCAGGCTTACCGCACTAAGTCGAGGACC  679

seq1  GATGTCGGCTCTCAGGGACGGGTGCGCAGACCGCAACCCCACTATGCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCGGCTCTCAGGGACGGGTGCGCAGACCGCAACCCCACTATGCCAA  729

seq1  CCCTGACACCCACCGGAGTCAGGTAAGTTTTTTTAACAGAGAAAAGAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACCCACCGGAGTCAGGTAAGTTTTTTTAACAGAGAAAAGAACA  779

seq1  CAGTGGAAGAACGTGGAGTATCTCACCGCATGGATACCTGCAGGTCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAACGTGGAGTATCTCACCGCATGGATACCTGCAGGTCCTCC  829

seq1  TCCTTGCAGCGCGGACGGTTCTGACAAAACGCTAAAATGGCGGCGGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGCGCGGACGGTTCTGACAAAACGCTAAAATGGCGGCGGCCAC  879

seq1  AGCAGTGACTCTGGGTAGAAAGAGGGGTGAACCTACCCACCGGATTGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGACTCTGGGTAGAAAGAGGGGTGAACCTACCCACCGGATTGGCC  929

seq1  GTTCGGTAAAGTAAAAGGCTGGCGTTCCCGGAGATCCTCTTCCTGATTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGTAAAGTAAAAGGCTGGCGTTCCCGGAGATCCTCTTCCTGATTGG  979

seq1  TTACCCGGAACGCCAATTACCTGAGAGGCCAGGAAGAGGTGGAAACGTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGGAACGCCAATTACCTGAGAGGCCAGGAAGAGGTGGAAACGTCA  1029

seq1  GTAACCTGGACCTTTTATATGAAAGCCAATGAGCACCCAGCCTAGTGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGGACCTTTTATATGAAAGCCAATGAGCACCCAGCCTAGTGAAA  1079

seq1  CTGAAGCCACTGATTGGGCAAGAGGTCCATCTGAAGGTGGAGCTAGAAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCACTGATTGGGCAAGAGGTCCATCTGAAGGTGGAGCTAGAAAC  1129

seq1  GCGGAATTC  1157
      |||||||||
seq2  GCGGAATTC  1138

seq1: chr19_4637343_4638488
seq2: B6Ng01-059A02.g_66_1186

seq1  GAATTCACTGGGGACCCAAGGGAAGTGCTGTAGAGGCAAGAACTGTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGGACCCAAGGGAAGTGCTGTAGAGGCAAGAACTGTGACT  50

seq1  TCTTTACTGTGCTCAGTTATCTCTCTGGGAGCTTGGAAGGCAGAGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGTGCTCAGTTATCTCTCTGGGAGCTTGGAAGGCAGAGAAGGG  100

seq1  CCTGAGATGCTTGGCATGTGAGACCCATGTCTTCCCACCTAAGCAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGCTTGGCATGTGAGACCCATGTCTTCCCACCTAAGCAAGATT  150

seq1  CTTCTCCCAAGACCTTTGTCTACAGCAGACGAATATTGCAGAGATCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCAAGACCTTTGTCTACAGCAGACGAATATTGCAGAGATCCCTC  200

seq1  TGTCTCATGACTGGGTTGAAAGGATTCTCTTCTTTGAGATGAGTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATGACTGGGTTGAAAGGATTCTCTTCTTTGAGATGAGTGAGAAA  250

seq1  GCAGCCATCCCATTGAGCAGTGAGGCTGAGGAAGGGGTGGGAAGTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATCCCATTGAGCAGTGAGGCTGAGGAAGGGGTGGGAAGTGTCTG  300

seq1  ATGAGCCCTTGGGGAGAAGAGAACCAGAGAGCACAGTCCCCACCCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCTTGGGGAGAAGAGAACCAGAGAGCACAGTCCCCACCCAGGAG  350

seq1  ACTGAGTTCATCAATGCGCTCAGCCTTGGATGCCTTAGTACAGAACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTCATCAATGCGCTCAGCCTTGGATGCCTTAGTACAGAACTGTA  400

seq1  GACATCCGTTAAAGGACGTGAGGATCCTGCTAAAACCATGTGCTAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCGTTAAAGGACGTGAGGATCCTGCTAAAACCATGTGCTAAGTTA  450

seq1  GAGAAAGATTTGTCTTTAGGTGTTTTTGCATGTTGGAAGCTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATTTGTCTTTAGGTGTTTTTGCATGTTGGAAGCTGTGTGTGTG  500

seq1  CAGGTTCCTGAGAGCCTAGAAGAGGCATTAATGTCCTGGAGCCAATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCTGAGAGCCTAGAAGAGGCATTAATGTCCTGGAGCCAATAGTG  550

seq1  AGCTACTTGATGTGGATTCATGGAACTAAATGTGGATCCTCCGGAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTGATGTGGATTCATGGAACTAAATGTGGATCCTCCGGAAGAGT  600

seq1  AGCACATTATCTTATGACAGCTGAGCCATTTCTCCAGCTCCTACATATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTATCTTATGACAGCTGAGCCATTTCTCCAGCTCCTACATATTA  650

seq1  ATTTTATAGATGAGAAATTGAAATTCAGAAAGAAGTGGCCCCTTAAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGATGAGAAATTGAAATTCAGAAAGAAGTGGCCCCTTAAGATC  700

seq1  AGGTAGGACAAAAGCCAGGGCCACTTCTTCCTACCCCATCATCCGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGACAAAAGCCAGGGCCACTTCTTCCTACCCCATCATCCGCACAC  750

seq1  ACAAAGGTGAAGCGATGACTGAAGGTTCTTACTTGCTTATAAAGGCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGAAGCGATGACTGAAGGTTCTTACTTGCTTATAAAGGCAAGG  800

seq1  TTTCTGTGCTACTAAAGTACTTTTTTCTAGGAAACAGTTTTAGACAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCTGTGCTACTAAAGTACTTTTTTCTAGGAAACAGTTTTAGAC-AAAT  849

seq1  AAGATATCACAATTAAA-GTATTAATTGAAGCACTATTTACATACAGCAA  899
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AAGATATCACAATTAAAGGTATTAATTGAAGCACTATTTACATACAGC-A  898

seq1  TAAATTACCAGTGTAAAAGCCCAACACTAGAGGAATGAATTATTAAATTA  949
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TAAATTACCAGTGTAAAAGCCC-ACACTAGAGG-ATGAATTATTAAATTA  946

seq1  GATTAAGTAATAAAGTACACTATTTATTAACAAAATCAAATTCTATCTTT  999
      |||| ||||||||||||||||||||||  || ||||| ||||||||| ||
seq2  GATT-AGTAATAAAGTACACTATTTAT--AC-AAATC-AATTCTATC-TT  990

seq1  GTTGAAATTGGTAAAATTCAATTTTATACACAAAAATATAATTTCCTGGT  1049
      |||||||||||| |||||||| ||||||| ||||||||| ||||||||||
seq2  GTTGAAATTGGT-AAATTCAA-TTTATAC-CAAAAATAT-ATTTCCTGGT  1036

seq1  TTCAACTATGTAATATGAGATGTGAAAAAATTAAAATTGTAGTAATAGAA  1099
      ||| ||||||||| ||| ||||   |||| |||||  || ||||||||  
seq2  TTC-ACTATGTAA-ATG-GATGGTGAAAATTTAAA--TGGAGTAATAG--  1079

seq1  ATTAGTACTTAAGTTTTTCTATGTGACATATTATCTTTTAAGAAAAA  1146
      |||||||| |||| ||||||||| ||| ||||||| |||||||||||
seq2  ATTAGTAC-TAAG-TTTTCTATG-GAC-TATTATC-TTTAAGAAAAA  1121