BAC Information

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BAC

Clone NameB6Ng01-059J01
Chromosome19 (Build37)2 (Build37)
Map Location 40,490,723 - 40,491,04530,006,984 - 30,007,637
singlet/doubletsingletsinglet
Overlap geneSorbs1
Upstream geneCyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J01.bB6Ng01-059J01.g
ACCDH880807DH880808
length227653
definitionDH880807|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J01, 5' end.DH880808|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,490,723 - 40,491,045)(30,006,984 - 30,007,637)
sequence
ttgatcctcctgcctccaatcccctgaagtgctggaattattggggtttt
ttttgtttgtttggttggttggtttggttttttgggtttctctctctctc
tctctctctctctctctctctctttctttctttctttttcgagacagggt
ttctctgtgtagccctggctgtcctggaactcactttgttgaccagactg
gcctcgaactcataaatctgcctgcct
gaattcaaatatggattgtcttattccccaaggttaaccctgacatcctc
tccccgttcctgcctgagagggctgccagctttaccctagagccgagtat
aagggaggccatatacactcccgccatcttgaccgcccccagacctagga
cttggtagctggtagctcagccccagtactgctccctttgttgactggga
cgcagcaaatgctgcccaggacgcggatgcattcattccttcttgcctgc
ctcccccaccccaccccttgccccgtttcctgggaccatgctactggaat
cactgcatctgatttgtttctgtgggagacctgcatcctgtgcccaccac
ttggtccttgagatgaaggccaaggacatggagactttgtcttgggtagg
gtggctccgcagttggacgctgcctgagggaaggatctgcccttgattct
taagggggaaccccgagcctgagctcctgcagctcccgggagctcagcag
gccagggctgttgatgagtcgtccttaataaactgtgctctttaccatgc
gtgtcggtgctgtgctggctggacttgagactttggaggagaggaaacag
ttggagcaagacagagccagagtcccttagagtgttctaagacagaccag
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40490723_40491045
seq2: B6Ng01-059J01.b_96_276

seq1  TTTTGTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTTGTTTTTTTGAGACA  50
      |||| |||||||||||||||||||||||||||||||              
seq2  TTTTTTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTT-------------T  37

seq1  GGGTTTCTCTGTTGTAGCCTTGGCTGTCCTGGAACTCGCGCTGTTCAAAG  100
      ||||||||||                        ||| | ||        
seq2  GGGTTTCTCT------------------------CTCTCTCT--------  55

seq1  CTGGCCGTGAACTGAGAGATCCTCCTCTGAGTGCTGGATTGAAGGCTTGA  150
                              |||                       
seq2  ------------------------CTC-----------------------  58

seq1  GCCATCACTGCCCAGGCTTCTTCTTGTTTCTTTTTTTTCCTTTTCTTTTC  200
                                                      ||
seq2  ------------------------------------------------TC  60

seq1  TCTCTCTCTCTCT-TCCTTTTTTCTTTTTGGTTTTTCAAGACAGGGTTTC  249
      ||||||||||||| || || |||||||    |||||| ||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTTTCTTT---CTTTTTCGAGACAGGGTTTC  107

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  299
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTTGACCAGACTGGCC  157

seq1  TCGAACTCAGAAATCCGCCTGCCT  323
      ||||||||| ||||| ||||||||
seq2  TCGAACTCATAAATCTGCCTGCCT  181

seq1: chr2_30006984_30007637
seq2: B6Ng01-059J01.g_68_720

seq1  GAATTCAAATATGGATTGTCTTATTCCCCAAGGTTAACCCTGACATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGGATTGTCTTATTCCCCAAGGTTAACCCTGACATCCTC  50

seq1  TCCCCGTTCCTGCCTGAGAGGGCTGCCAGCTTTACCCTAGAGCCGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTTCCTGCCTGAGAGGGCTGCCAGCTTTACCCTAGAGCCGAGTAT  100

seq1  AAGGGAGGCCATATACACTCCCGCCATCTTGACCGCCCCCAGACCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGCCATATACACTCCCGCCATCTTGACCGCCCCCAGACCTAGGA  150

seq1  CTTGGTAGCTGGTAGCTCAGCCCCAGTACTGCTCCCTTTGTTGACTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGCTGGTAGCTCAGCCCCAGTACTGCTCCCTTTGTTGACTGGGA  200

seq1  CGCAGCAAATGCTGCCCAGGACGCGGATGCATTCATTCCTTCTTGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAAATGCTGCCCAGGACGCGGATGCATTCATTCCTTCTTGCCTGC  250

seq1  CTCCCCCACCCCACCCCTTGCCCCGTTTCCTGGGACCATGCTACTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCCACCCCTTGCCCCGTTTCCTGGGACCATGCTACTGGAAT  300

seq1  CACTGCATCTGATTTGTTTCTGTGGGAGACCTGCATCCTGTGCCCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATCTGATTTGTTTCTGTGGGAGACCTGCATCCTGTGCCCACCAC  350

seq1  TTGGTCCTTGAGATGAAGGCCAAGGACATGGAGACTTTGTCTTGGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTTGAGATGAAGGCCAAGGACATGGAGACTTTGTCTTGGGTAGG  400

seq1  GTGGCTCCGCAGTTGGACGCTGCCTGAGGGAAGGATCTGCCCTTGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCGCAGTTGGACGCTGCCTGAGGGAAGGATCTGCCCTTGATTCT  450

seq1  TAAGGGGGAACCCCGAGCCTGAGCTCCTGCAGCTCCCGGGAGCTCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGGAACCCCGAGCCTGAGCTCCTGCAGCTCCCGGGAGCTCAGCAG  500

seq1  GCCAGGGCTGTTGATGAGTCGTCCTTAATAAACTGTGCTCTTTACCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTGTTGATGAGTCGTCCTTAATAAACTGTGCTCTTTACCATGC  550

seq1  GTGTCGGTGCTGTGCTGGCTGGACTTGAGACTTTGGAGGAGAGGAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGTGCTGTGCTGGCTGGACTTGAGACTTTGGAGGAGAGGAAACAG  600

seq1  TTGGAGCAAGGACAGAGCCAGAGTCCCTTAGAGTGTTCTAAGACAGACCA  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAA-GACAGAGCCAGAGTCCCTTAGAGTGTTCTAAGACAGACCA  649

seq1  GGAG  654
      ||||
seq2  GGAG  653