BAC Information

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BAC

Clone NameB6Ng01-059J19
Chromosome19 (Build37)
Map Location 16,345,346 - 16,346,529
singlet/doubletsinglet
Overlap geneGnaq
Upstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, E030024N20Rik, LOC624438
Downstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J19.bB6Ng01-059J19.g
ACCDH880837DH880838
length1,1691,259
definitionDH880837|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J19, 5' end.DH880838|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtggattctagaaacaggcactattgcgttctgcgtagactg
tgttttcctatgtgcctggcgaatgtcatgccagagttaatgtgggcagg
tagtgtttatatggcatggacacaaaagatgttgagatagtgctcattcc
aggcaagatgggtctgtgttccattatgatgctgagaacagagcatgggt
aaaatcttggcattgtgtagttctgtaatagtttaacatttggcctgtgg
ttattaactgtaaatgaaaccacagaacatgaagctgcatgaaagggcac
tgtgccaagtgtctttctcagtctcctggctaaacacagtggtcagtgtt
gatgcctcttccatacatacagagatcagagtgagcagagggagagggac
cagcagggccatgctgaggttgtcacacacaggaagagactgtagccagt
ctgtgttgtttggagatggggtccgcttgccttagtcttcagagtgctgg
gattatagatgcattaccatacctacctccattctgaatcttggctccct
gaagaccacagaactcagtaagtttctgagtgtcagtgtgggtggggcat
gtataacttagtccaaaggtggaacaagagaatccatattcttattttac
atttcaacctgcatccatccccctattgtattttaataaagcatttctca
aatctttgttagttcatactgctcattgggaaagtgtttgtgtttgttca
catagacaccagtgtttcctgaaaatgttcagctgtctccacatctctcc
agcctaccggagagagttgcttgatgagttccccaaaggtttctccaggc
agaaacatttacaggacaggttccttgatgggcatcttagtggagttgcc
ttagcttcttgccttcctcctgttctggctatactcagctgcagtcagcc
ctgtactaatgcttctgagacactgacttagtgctaggggagctttggca
gaagaacttgatcttctgttgagtagccagactaaaagctccctttcctt
tgaaattggtatatactttttttaagtatagatggtttatattttgttag
ttttctttgctcagaaggttgattttctatatacatttcttaagaaccca
gaatacaagttaatttgtt
gaattctttgtttagctctgtacaccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattgaatattagtcccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcttt
ttttgtcttattgacagagtctcttgccttacagaagctttgcaatttta
tgaggtcccatttgtctctctaggagttttctatccaggaaaaaaaaaac
ctacatatcctgccctcaagtacaaaagaatgaacaatacaattaaaaaa
atttttaaaaggacaaggaacttgtgtagacttctcaacaataacagcaa
caacacaagaccattaaacacaaggccaataaatcaatgaaaaggtattt
aataatatcactcactaagctaaggaaatgcaaatcaatgaagtagcatt
caaatctaacacagaaagtaagcaaacatgacaacaatcaatgagaagta
ttatggatatggaaaaactgaagccctcacgcttgcctagtaggaatgta
aagggctatgaaaggtgaggggaacatttgataattcctcaaaaagctaa
gtatagaactggctgatcagttgtacttgtcaacaagagcccacaagaat
tgcaagtgagcactcagagagatctttgcgcaccagtgttcactgtggca
ttagtcacaatagccaccacacaaacaaaccaagtgactctcagtcagct
acagaagagaaagaagtcttaacatgtgctacgtggtggttaattttaga
tgcccatttgactggattaaatgatgcttcagacagagggtaaaatagta
tgtctgcatgtccaggtgcatgtctaagaagagcttttcaaagtgagatt
aacattggaatcagggtgacaaaagaaacatgccacaaggcaacttgagg
gctgagaggattatattgtctcatagttacagagggtatagtcagtccac
ttgtgacaagaaggcatggttgctgcatggtcttgacccatgatgacgga
agcccatacatgcttgttcataacttcatatgaatcaagaaactattcga
attcagaagcttgtcaggctatcaacttaggaacccactgctgctggtct
aagctgccatcttgtcttatgtgtcattattcatctttcaaagatttaag
tgttagatgcaattataacatccaaccacggtgtgtgataggtttctata
atcaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16345346_16346529
seq2: B6Ng01-059J19.b_47_1215

seq1  GAATTCCAGTGGATTCTAGAAACAGGCACTATTGCGTTCTGCGTAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGATTCTAGAAACAGGCACTATTGCGTTCTGCGTAGACTG  50

seq1  TGTTTTCCTATGTGCCTGGCGAATGTCATGCCAGAGTTAATGTGGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTATGTGCCTGGCGAATGTCATGCCAGAGTTAATGTGGGCAGG  100

seq1  TAGTGTTTATATGGCATGGACACAAAAGATGTTGAGATAGTGCTCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTATATGGCATGGACACAAAAGATGTTGAGATAGTGCTCATTCC  150

seq1  AGGCAAGATGGGTCTGTGTTCCATTATGATGCTGAGAACAGAGCATGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGATGGGTCTGTGTTCCATTATGATGCTGAGAACAGAGCATGGGT  200

seq1  AAAATCTTGGCATTGTGTAGTTCTGTAATAGTTTAACATTTGGCCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGGCATTGTGTAGTTCTGTAATAGTTTAACATTTGGCCTGTGG  250

seq1  TTATTAACTGTAAATGAAACCACAGAACATGAAGCTGCATGAAAGGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTGTAAATGAAACCACAGAACATGAAGCTGCATGAAAGGGCAC  300

seq1  TGTGCCAAGTGTCTTTCTCAGTCTCCTGGCTAAACACAGTGGTCAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAAGTGTCTTTCTCAGTCTCCTGGCTAAACACAGTGGTCAGTGTT  350

seq1  GATGCCTCTTCCATACATACAGAGATCAGAGTGAGCAGAGGGAGAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCTTCCATACATACAGAGATCAGAGTGAGCAGAGGGAGAGGGAC  400

seq1  CAGCAGGGCCATGCTGAGGTTGTCACACACAGGAAGAGACTGTAGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGCCATGCTGAGGTTGTCACACACAGGAAGAGACTGTAGCCAGT  450

seq1  CTGTGTTGTTTGGAGATGGGGTCCGCTTGCCTTAGTCTTCAGAGTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTTTGGAGATGGGGTCCGCTTGCCTTAGTCTTCAGAGTGCTGG  500

seq1  GATTATAGATGCATTACCATACCTACCTCCATTCTGAATCTTGGCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAGATGCATTACCATACCTACCTCCATTCTGAATCTTGGCTCCCT  550

seq1  GAAGACCACAGAACTCAGTAAGTTTCTGAGTGTCAGTGTGGGTGGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCACAGAACTCAGTAAGTTTCTGAGTGTCAGTGTGGGTGGGGCAT  600

seq1  GTATAACTTAGTCCAAAGGTGGAACAAGAGAATCCATATTCTTATTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACTTAGTCCAAAGGTGGAACAAGAGAATCCATATTCTTATTTTAC  650

seq1  ATTTCAACCTGCATCCATCCCCCTATTGTATTTTAATAAAGCATTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACCTGCATCCATCCCCCTATTGTATTTTAATAAAGCATTTCTCA  700

seq1  AATCTTTGTTAGTTCATACTGCTCATTGGGAAAGTGTTTGTGTTTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTAGTTCATACTGCTCATTGGGAAAGTGTTTGTGTTTGTTCA  750

seq1  CATAGACACCAGTGTTTCCTG-AAATGTTCAGCTGTCTCCACATCTCTCC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATAGACACCAGTGTTTCCTGAAAATGTTCAGCTGTCTCCACATCTCTCC  800

seq1  AGCCTACCGGAGAGAGTTGCTTGATGAGTTCCCCAAAGGTTTCTCCAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCGGAGAGAGTTGCTTGATGAGTTCCCCAAAGGTTTCTCCAGGC  850

seq1  AGAAACA-TTACAGGACAGGTTCCTTGATGGGCATCTTAGTGGAGTTGCC  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTACAGGACAGGTTCCTTGATGGGCATCTTAGTGGAGTTGCC  900

seq1  TTAGCTTCTTGCC-TCCTCCTGTTCTGGCTATAACTCAGCTGCAGTCAGC  947
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTAGCTTCTTGCCTTCCTCCTGTTCTGGCTAT-ACTCAGCTGCAGTCAGC  949

seq1  CCTGTACT-ATGCTTCTGAGAACACTGACTTAGTGCTAGGGGAGCTTTGG  996
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  CCTGTACTAATGCTTCTGAG-ACACTGACTTAGTGCTAGGGGAGCTTTGG  998

seq1  CAGAAAGACTTGATCTTCTGTTGAGTAGGCAAGACTAAAAAGCTCCC-TT  1045
      |||||  |||||||||||||||||||| || ||||| |||||||||| ||
seq2  CAGAAGAACTTGATCTTCTGTTGAGTA-GCCAGACT-AAAAGCTCCCTTT  1046

seq1  CCTTTGAAAAATTGTGTATATACTTTTCTGTAAGTTATAGATGGTTTTAT  1095
      ||||||  |||||| |||||||||||| | |||| ||||||||| |||||
seq2  CCTTTG--AAATTG-GTATATACTTTT-TTTAAG-TATAGATGG-TTTAT  1090

seq1  ATTTGTTTAGTTTTTCTTTGCTCAGAAGGTTGAATGTTTCTAATAATACA  1145
      ||||  |||| ||||||||||||||||||||||   ||||||   |||||
seq2  ATTTTGTTAG-TTTTCTTTGCTCAGAAGGTTGA--TTTTCTA--TATACA  1135

seq1  TTTCTTTAGTAAACCCAGAACACAAAGTTAAATTTTGTT  1184
      |||||| ||  ||||||||| || |||||||  ||||||
seq2  TTTCTTAAG--AACCCAGAATAC-AAGTTAA--TTTGTT  1169