BAC Information

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BAC

Clone NameB6Ng01-059K07
Chromosome19 (Build37)
Map Location 27,658,933 - 27,769,761
singlet/doubletdoublet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K07.bB6Ng01-059K07.g
ACCDH880859DH880860
length1,0781,077
definitionDH880859|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K07, 5' end.DH880860|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,768,670 - 27,769,761)(27,658,933 - 27,660,032)
sequence
gaattccactccacttcactgctttctcagctcagtgactcaaccgaact
gcctgattagaactcagagatttgcaagtctcttgtctcctgagttctgg
gattaaaggcatgtaccaccatgcctggacctaagcttctctttacctaa
aactttctctgtatcaggctggccttgaactcagatatcggcttgactct
gtctcttgggattaaagtcatgtctgtattctagcaaatcacacaagcct
ataaagtctttggatgtgatctcttgccagagcagccatgttgctggaat
aaaattcctctacacaaatccaaacaacaatatcagctcctctagttaag
aaacacaaatagccaacagttcttcagaaagtgttcagtgtctttgaagt
ctggggaaatgcctgtgaatggtgttaagtgacatggtttggattggtcc
aaacacccactcccaggctttgtaaggctattcttgttgagttggtatgt
cagctggcaaaccctcccgtgatgcctcttctggtgttgccacagaccca
acaaaagacttgtgttgaatggtacattcttagattagccatgcaggctg
tgctgttagaacagaacaacagagagtcgggtggtggcagaggcagctgt
gtggccacagtgactgatttacacaggctgggaaggagtgtgggcagcag
gagcggggcggtggacataaagaaatagcaggagagttgaaatggaagaa
ttaaagctgcaaggagccagaaacaagaaactgcaggccttggtgtccag
aaactgctgtgaattggggttgatgcgtggctggcaactttgcctcctgg
tgccaggcattccttacgcccttgtttctggatgagttttaaagaagtgt
caacgccttgaggccaagagtctgagacacctggccaagagctatacact
gcgtggctttaatagtaagaatcctgaaactgtagactacacaaaatctc
taacacagctagctgtcacagatcccacagtagcagacagcttgcatgtt
agctacaccaagaccagaataccctaga
gaattcaaaacacaacagaactggaagagaattgagccccatttctcctc
ttcccataaagtccagtcttgtttaagaaatacgcaccatgacagagacc
tcaaaatcccctgaactgcaccagctctagaagagggagagggagcagct
attgtgagactgctttcttctgtctcatcttctccatcttcttttttccc
cccttctctcctgatttcttccctcctcccatgtcgctgcctcagtggtg
ttgccataatggtaacatcagccaacaggaaccaaagctacgagagcgaa
cctcctctccactcctgggcactgttgtttcaaaggctggggtcatgcct
gccactggggctttgttcttcctgtaccctttctgcctagccaatctgta
gaaaaggaatccacaggcaaatcaacttgtaagtggtggattatctatca
cgacttttaggcttcttcctctgtccttccttcttcctttgggttaaaag
ggaaagatgccaagtcagggcagggggatattagaaatgaagttagttct
ccccgattacatggcaagctgagcaatctctgctgcccttccctggatgt
gtccctttcggtgtgtgccaccaagggttggttggtcatagagcttcaaa
gcggcatgactctagtagctggtgctggctgttagctgacacacttcatt
tctcacgtgtacccttagctccaacatgaaagacctgggcatgagaatgt
gcacacaggatctctaggtttgctgaagcctgggaccctggaactcatgg
ggaatattgtctctgttacaagtctagcataacttaagggctagaagtct
ctgaaagagtaggaaagatctacagcatggtgagggagttgcagttggag
acaagagccattggagactgttgtttcaaattctgtgtacttgcttagga
atagtgttcaaagctcaggccatgggcacacaattgttgcctagtgacga
atgatgccctattgtgttagatcccaatgagaaattaagggaaatatgag
actgtgttacgaactgctgatgtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27768670_27769761
seq2: B6Ng01-059K07.b_43_1120 (reverse)

seq1  TCTAGGGGTATTCCTGGGTCTTGGTTGTAGCTAACATTGCAAGCTGGTCT  50
      |||| ||||||||   |||||||| ||||||||||| |||||||| ||| 
seq2  TCTA-GGGTATTC--TGGTCTTGG-TGTAGCTAACA-TGCAAGCT-GTC-  43

seq1  TGCTTACTGTTGGGATTCTGTGACAGCTAGCTGTGTTAGAGATTTTGTGT  100
      ||| ||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TGC-TACTG-TGGGA-TCTGTGACAGCTAGCTGTGTTAGAGATTTTGTGT  90

seq1  AGGTCTACAGTTTCAGGATTCCTTACCTATTAAAGCCACGCAGTGTTATA  150
      | |||||||||||||||||| |||| ||||||||||||||||||| ||||
seq2  A-GTCTACAGTTTCAGGATT-CTTA-CTATTAAAGCCACGCAGTG-TATA  136

seq1  GCTCTTGGCCAGGTGTCTCAGACTCTTGGCCTCAAGGCGTTGACACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGCCAGGTGTCTCAGACTCTTGGCCTCAAGGCGTTGACACTTCT  186

seq1  TTAAAACTCATCCAGAAACAAGGGCGTAAGGAATGCCTGGCACCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTCATCCAGAAACAAGGGCGTAAGGAATGCCTGGCACCAGGAGG  236

seq1  CAAAGTTGCCAGCCACGCATCAACCCCAATTCACAGCAGTTTCTGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCCAGCCACGCATCAACCCCAATTCACAGCAGTTTCTGGACAC  286

seq1  CAAGGCCTGCAGTTTCTTGTTTCTGGCTCCTTGCAGCTTTAATTCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTGCAGTTTCTTGTTTCTGGCTCCTTGCAGCTTTAATTCTTCCA  336

seq1  TTTCAACTCTCCTGCTATTTCTTTATGTCCACCGCCCCGCTCCTGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCTCCTGCTATTTCTTTATGTCCACCGCCCCGCTCCTGCTGCC  386

seq1  CACACTCCTTCCCAGCCTGTGTAAATCAGTCACTGTGGCCACACAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTTCCCAGCCTGTGTAAATCAGTCACTGTGGCCACACAGCTGC  436

seq1  CTCTGCCACCACCCGACTCTCTGTTGTTCTGTTCTAACAGCACAGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACCACCCGACTCTCTGTTGTTCTGTTCTAACAGCACAGCCTGC  486

seq1  ATGGCTAATCTAAGAATGTACCATTCAACACAAGTCTTTTGTTGGGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAATCTAAGAATGTACCATTCAACACAAGTCTTTTGTTGGGTCTG  536

seq1  TGGCAACACCAGAAGAGGCATCACGGGAGGGTTTGCCAGCTGACATACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACACCAGAAGAGGCATCACGGGAGGGTTTGCCAGCTGACATACCA  586

seq1  ACTCAACAAGAATAGCCTTACAAAGCCTGGGAGTGGGTGTTTGGACCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAAGAATAGCCTTACAAAGCCTGGGAGTGGGTGTTTGGACCAAT  636

seq1  CCAAACCATGTCACTTAACACCATTCACAGGCATTTCCCCAGACTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCATGTCACTTAACACCATTCACAGGCATTTCCCCAGACTTCAAA  686

seq1  GACACTGAACACTTTCTGAAGAACTGTTGGCTATTTGTGTTTCTTAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAACACTTTCTGAAGAACTGTTGGCTATTTGTGTTTCTTAACTA  736

seq1  GAGGAGCTGATATTGTTGTTTGGATTTGTGTAGAGGAATTTTATTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTGATATTGTTGTTTGGATTTGTGTAGAGGAATTTTATTCCAGC  786

seq1  AACATGGCTGCTCTGGCAAGAGATCACATCCAAAGACTTTATAGGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTGCTCTGGCAAGAGATCACATCCAAAGACTTTATAGGCTTGT  836

seq1  GTGATTTGCTAGAATACAGACATGACTTTAATCCCAAGAGACAGAGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGCTAGAATACAGACATGACTTTAATCCCAAGAGACAGAGTCAA  886

seq1  GCCGATATCTGAGTTCAAGGCCAGCCTGATACAGAGAAAGTTTTAGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATATCTGAGTTCAAGGCCAGCCTGATACAGAGAAAGTTTTAGGTAA  936

seq1  AGAGAAGCTTAGGTCCAGGCATGGTGGTACATGCCTTTAATCCCAGAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTTAGGTCCAGGCATGGTGGTACATGCCTTTAATCCCAGAACT  986

seq1  CAGGAGACAAGAGACTTGCAAATCTCTGAGTTCTAATCAGGCAGTTCGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACAAGAGACTTGCAAATCTCTGAGTTCTAATCAGGCAGTTCGGT  1036

seq1  TGAGTCACTGAGCTGAGAAAGCAGTGAAGTGGAGTGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGAGCTGAGAAAGCAGTGAAGTGGAGTGGAATTC  1078

seq1: chr19_27658933_27660032
seq2: B6Ng01-059K07.g_67_1143

seq1  GAATTCAAAACACAACAGAACTGGAAGAGAATTGAGCCCCATTTCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACACAACAGAACTGGAAGAGAATTGAGCCCCATTTCTCCTC  50

seq1  TTCCCATAAAGTCCAGTCTTGTTTAAGAAATACGCACCATGACAGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAAAGTCCAGTCTTGTTTAAGAAATACGCACCATGACAGAGACC  100

seq1  TCAAAATCCCCTGAACTGCACCAGCTCTAGAAGAGGGAGAGGGAGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCCCCTGAACTGCACCAGCTCTAGAAGAGGGAGAGGGAGCAGCT  150

seq1  ATTGTGAGACTGCTTTCTTCTGTCTCATCTTCTCCATCTTCTTTTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGACTGCTTTCTTCTGTCTCATCTTCTCCATCTTCTTTTTTCCC  200

seq1  CCCTTCTCTCCTGATTTCTTCCCTCCTCCCATGTCGCTGCCTCAGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTCCTGATTTCTTCCCTCCTCCCATGTCGCTGCCTCAGTGGTG  250

seq1  TTGCCATAATGGTAACATCAGCCAACAGGAACCAAAGCTACGAGAGCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATAATGGTAACATCAGCCAACAGGAACCAAAGCTACGAGAGCGAA  300

seq1  CCTCCTCTCCACTCCTGGGCACTGTTGTTTCAAAGGCTGGGGTCATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCCACTCCTGGGCACTGTTGTTTCAAAGGCTGGGGTCATGCCT  350

seq1  GCCACTGGGGCTTTGTTCTTCCTGTACCCTTTCTGCCTAGCCAATCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGGCTTTGTTCTTCCTGTACCCTTTCTGCCTAGCCAATCTGTA  400

seq1  GAAAAGGAATCCACAGGCAAATCAACTTGTAAGTGGTGGATTATCTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAATCCACAGGCAAATCAACTTGTAAGTGGTGGATTATCTATCA  450

seq1  CGACTTTTAGGCTTCTTCCTCTGTCCTTCCTTCTTCCTTTGGGTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTTAGGCTTCTTCCTCTGTCCTTCCTTCTTCCTTTGGGTTAAAAG  500

seq1  GGAAAGATGCCAAGTCAGGGCAGGGGGATATTAGAAATGAAGTTAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATGCCAAGTCAGGGCAGGGGGATATTAGAAATGAAGTTAGTTCT  550

seq1  CCCCGATTACATGGCAAGCTGAGCAATCTCTGCTGCCCTTCCCTGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGATTACATGGCAAGCTGAGCAATCTCTGCTGCCCTTCCCTGGATGT  600

seq1  GTCCCTTTCGGTGTGTGCCACCAAGGGTTGGTTGGTCATAGAGCTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCGGTGTGTGCCACCAAGGGTTGGTTGGTCATAGAGCTTCAAA  650

seq1  GCGGCATGACTCTAGTAGCTGGTGCTGGCTGTTAGCTGACACACTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATGACTCTAGTAGCTGGTGCTGGCTGTTAGCTGACACACTTCATT  700

seq1  TCTCACGTGTACCCTTAGCTCCAACATGAAAGACCTGGGCATGAGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGTGTACCCTTAGCTCCAACATGAAAGACCTGGGCATGAGAATGT  750

seq1  GCACACAGGATCTCTAGGTTTGCTGAAGCCTGGGACCCTGGAACTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGATCTCTAGGTTTGCTGAAGCCTGGGACCCTGGAACTCATGG  800

seq1  GGAATATTGTCTCTGTTACAAGTCTAGCATAACTTAAGGGCTAGAAAGTC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAATATTGTCTCTGTTACAAGTCTAGCATAACTTAAGGGCTAG-AAGTC  849

seq1  TCTGAAAGAGTAGGAAAGATCTACAGCATGGTGAGGGGAGTTGCAGTTGG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTGAAAGAGTAGGAAAGATCTACAGCATGGTGA-GGGAGTTGCAGTTGG  898

seq1  AGACAAGAGCCATTGGAGACTGTTGTTTCAAAATTCTGTTGTACTTGCTT  950
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  AGACAAGAGCCATTGGAGACTGTTGTTTC-AAATTCTG-TGTACTTGCTT  946

seq1  AGGGAAATAGTGTTTCAAAGCTCAAGGGCCATGGGCACACAATTGTTGCC  1000
      |||  ||||||| |||||||||||  |||||||||||||||||||||| |
seq2  AGG--AATAGTG-TTCAAAGCTCA--GGCCATGGGCACACAATTGTTG-C  990

seq1  CTAGGTGAACAGAATGATGCCCTATTGTGTTTAGGATCCCACAATTGAGA  1050
      ||| ||||   ||||||||||||||||||||   ||||||   | |||||
seq2  CTA-GTGA--CGAATGATGCCCTATTGTGTT--AGATCCC---AATGAGA  1032

seq1  AATATAAGGGGAAAATATGAGACTGGATGTCACG-ACTGCTGATGCTCAT  1099
      ||| ||||||  |||||||||||||  ||| ||| |||||||||| ||||
seq2  AAT-TAAGGG--AAATATGAGACTG--TGTTACGAACTGCTGATG-TCAT  1076

seq1  G  1100
      |
seq2  G  1077