BAC Information

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BAC

Clone NameB6Ng01-059K19
Chromosome19 (Build37)
Map Location 25,978,131 - 26,110,023
singlet/doubletdoublet
Overlap genenone
Upstream geneCbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K19.bB6Ng01-059K19.g
ACCDH880881DH880882
length1,190866
definitionDH880881|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K19, 5' end.DH880882|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,108,802 - 26,110,023)(25,978,131 - 25,978,995)
sequence
gaattcttagaactctctaccctagaagtttaatgagacccacttcacag
atgagcttctcagatgaggacatttggattcatgggccagcttacctgcc
gttcaactccctccagcatacacaataggccctatgcttctaaatcacgg
aggcttttaactaagcctttccagttctccctttacctgctttcttatta
aaacaaacaaaacctcacaatgtaataatccctgttttggaaatgaccat
cccaggacctaagaaaaaaaaatcaacctatgaaatgtattctcttcaat
gctttgcttgcccttccaatgtaatatttttattgattatttgagatttt
cacataatccatgcagaaactaattcacttcccagtcttcccaggtccat
cctcctctaattcttctctaaaggttcttttggacacagttacttacata
ataattattattttccctgagttgaataataagcatccttgactttagca
taaagggaattctttccaggttataatgcttgatttcaacaccagtgata
ttagttatacagactcactctctccagtctcatataattaggatacttaa
ggaccagttttaaacacttaaccgctttgtctggccagtatctagagcaa
acaagtagagcaggagggtgaatatccccccagagtcagctcaggatgtc
tctacagcatggcctgaaattctttcaacttccacatcccacctgaccac
aatggaattataatgaaatgaagagatgcagaattacaaagaatataagc
tcttctactgaaagccctgaacagccaggctaccatggtttgagctggtg
aacacagagctttcaagagaattttagattgacagcttccaaggggatag
gcctatatgttagtctcttaggatacagcaattaaactagacatcatcgg
gtttctagaaccttctgcttggctaaggttgatatcaaagtaaaatcttc
ttattctattggacaggtgtcatgctgctagaagctcctagccagcttca
tcttttcttctcgctcaggaagggggagtgtgaaagacacaactactaat
ggaagcacctgtgatgctcatggatacaaggagttaacttagcagtcttg
ttccagagccttggattttatcacaagagtggtttatttt
gaattctcctccattcattttaaatgacctgaaagaacaatgaggcgctt
gtccactggctggttggacaactataggttttattatattaggattgtat
tactgtaaagggatgattttatcactagttttcatcactcatattttcat
taattattattttttatttaatcattagtacttttaagtacggtggcttg
gggttattattgttgtgatgaaacaccatgaccaagagcaacttggggga
ggaaaggatttgttttatttacagtttcatgtaacagtctgtcactgaat
gaagtcagggcagtaactcaggcagagcaggaacttggaggtagaagctg
aagtagacgccatgaaggaggaatgcttactaacttgcttcacgtggctt
gctcagcctgctttcttacagcattcagaaccacaagtcctgggacgatg
ccactcacaatgggctgggctctaccccatcaatcatctcttaagaaaat
gccctacaggtttgcctacagcccaatcttatagaagcaatttctcaact
ctatctctgagatggctccagcttgacataaaactaggcaacatatgtag
gtataagcatcaaacatctgttttacttaagcaaaagagaatctttcctc
attgaaatgctggatgcttttcacatcctttcagacattgatgtctttgt
taggagaatggagagggaccagcttattgctttgaaaactgcctaacaac
ttgacatcaaggaagtttgtctggatttatccatagagatgattcaggga
atagaaatgtaattggtactttgtaataagatcagatctggaaagggata
tatttttcccacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26108802_26110023
seq2: B6Ng01-059K19.b_50_1239 (reverse)

seq1  AAAATAAAACCACTCTTGGTGGATAAAAATCCCAAGAGCTCTGAGAACAG  50
      ||||| ||||||||||||   |||||||   ||||| |||||| ||||| 
seq2  AAAAT-AAACCACTCTTG--TGATAAAA--TCCAAG-GCTCTG-GAACAA  43

seq1  GCACTGCTAGGGTTAACTTCCTTTGTAGTGCACATGGGGCATCACAGAGT  100
      | |||||||  |||||||  | ||||| | ||    | ||||||||| ||
seq2  G-ACTGCTA-AGTTAACT--CCTTGTA-TCCA---TGAGCATCACAG-GT  84

seq1  GCTTCCATTAGTAGTTTGTTGTCTTTCACACTTCCACCTTTCCTGAGCGA  150
      ||||||||||||||||   |||||||||||||  | || |||||||||||
seq2  GCTTCCATTAGTAGTT--GTGTCTTTCACACT--CCCCCTTCCTGAGCGA  130

seq1  AGGAAGAAAAGGATGGAAGCTGTGCTGGGGAGCTTTCTAGCAGCATGACA  200
        |||||||| ||| ||||||| |||  ||||| ||||||||||||||||
seq2  --GAAGAAAA-GAT-GAAGCTG-GCT-AGGAGC-TTCTAGCAGCATGACA  173

seq1  CCTTGTTCAAATAGAATAAGGAAGATTTTACTTTTGATATCAAACCTTAG  250
      |||   || |||||||||| ||||||||||| ||||||||| ||||||||
seq2  CCT--GTCCAATAGAATAA-GAAGATTTTAC-TTTGATATC-AACCTTAG  218

seq1  CCAAGCAGAAGGTTCTAGAAACCCGATGATGTCTAGTTTAATTGCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGAAGGTTCTAGAAACCCGATGATGTCTAGTTTAATTGCTGTAT  268

seq1  -CTAAGAGACTAACATATAGGCCTATCCCCTTGGAAGCTGTCAATCTAAA  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGACTAACATATAGGCCTATCCCCTTGGAAGCTGTCAATCTAAA  318

seq1  ATTCTCTTTGAAAGCTCTGTGTTCACCAGCTCAAACCATGGTAGCCTGGC  399
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTC-TTGAAAGCTCTGTGTTCACCAGCTCAAACCATGGTAGCCTGGC  367

seq1  TGTTCAGGGCTTTCAGTAGAAGAGCTTATATTCTTTGTAATTCTGCATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGGCTTTCAGTAGAAGAGCTTATATTCTTTGTAATTCTGCATCT  417

seq1  CTTCATTTCATTATAATTCCATTGTGGTCAGGTGGGATGTGGAAGTTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTCATTATAATTCCATTGTGGTCAGGTGGGATGTGGAAGTTGAA  467

seq1  AGAATTTCAGGCCATGCTGTAGAGACATCCTGAGCTGACTCTGGGGGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAGGCCATGCTGTAGAGACATCCTGAGCTGACTCTGGGGGGAT  517

seq1  ATTCACCCTCCTGCTCTACTTGTTTGCTCTAGATACTGGCCAGACAAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCCTCCTGCTCTACTTGTTTGCTCTAGATACTGGCCAGACAAAGC  567

seq1  GGTTAAGTGTTTAAAACTGGTCCTTAAGTATCCTAATTATATGAGACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTGTTTAAAACTGGTCCTTAAGTATCCTAATTATATGAGACTGG  617

seq1  AGAGAGTGAGTCTGTATAACTAATATCACTGGTGTTGAAATCAAGCATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGAGTCTGTATAACTAATATCACTGGTGTTGAAATCAAGCATTA  667

seq1  TAACCTGGAAAGAATTCCCTTTATGCTAAAGTCAAGGATGCTTATTATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGAAAGAATTCCCTTTATGCTAAAGTCAAGGATGCTTATTATTC  717

seq1  AACTCAGGGAAAATAATAATTATTATGTAAGTAACTGTGTCCAAAAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGGAAAATAATAATTATTATGTAAGTAACTGTGTCCAAAAGAAC  767

seq1  CTTTAGAGAAGAATTAGAGGAGGATGGACCTGGGAAGACTGGGAAGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGAAGAATTAGAGGAGGATGGACCTGGGAAGACTGGGAAGTGAA  817

seq1  TTAGTTTCTGCATGGATTATGTGAAAATCTCAAATAATCAATAAAAATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTGCATGGATTATGTGAAAATCTCAAATAATCAATAAAAATAT  867

seq1  TACATTGGAAGGGCAAGCAAAGCATTGAAGAGAATACATTTCATAGGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGAAGGGCAAGCAAAGCATTGAAGAGAATACATTTCATAGGTTG  917

seq1  ATTTTTTTTTCTTAGGTCCTGGGATGGTCATTTCCAAAACAGGGATTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTCTTAGGTCCTGGGATGGTCATTTCCAAAACAGGGATTATT  967

seq1  ACATTGTGAGGTTTTGTTTGTTTTAATAAGAAAGCAGGTAAAGGGAGAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAGGTTTTGTTTGTTTTAATAAGAAAGCAGGTAAAGGGAGAAC  1017

seq1  TGGAAAGGCTTAGTTAAAAGCCTCCGTGATTTAGAAGCATAGGGCCTATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGCTTAGTTAAAAGCCTCCGTGATTTAGAAGCATAGGGCCTATT  1067

seq1  GTGTATGCTGGAGGGAGTTGAACGGCAGGTAAGCTGGCCCATGAATCCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCTGGAGGGAGTTGAACGGCAGGTAAGCTGGCCCATGAATCCAA  1117

seq1  ATGTCCTCATCTGAGAAGCTCATCTGTGAAGTGGGTCTCATTAAACTTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCATCTGAGAAGCTCATCTGTGAAGTGGGTCTCATTAAACTTCT  1167

seq1  AGGGTAGAGAGTTCTAAGAATTC  1222
      |||||||||||||||||||||||
seq2  AGGGTAGAGAGTTCTAAGAATTC  1190

seq1: chr19_25978131_25978995
seq2: B6Ng01-059K19.g_68_932

seq1  GAATTCTCCTCCATTCATTTTAAATGACCTGAAAGAACAATGAGGCGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCATTCATTTTAAATGACCTGAAAGAACAATGAGGCGCTT  50

seq1  GTCCACTGGCTGGTTGGACAACTATAGGTTTTATTATATTAGGATTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTGGCTGGTTGGACAACTATAGGTTTTATTATATTAGGATTGTAT  100

seq1  TACTGTAAAGGGATGATTTTATCACTAGTTTTCATCACTCATATTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAAGGGATGATTTTATCACTAGTTTTCATCACTCATATTTTCAT  150

seq1  TAATTATTATTTTTTATTTAATCATTAGTACTTTTAAGTACGGTGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATTTTTTATTTAATCATTAGTACTTTTAAGTACGGTGGCTTG  200

seq1  GGGTTATTATTGTTGTGATGAAACACCATGACCAAGAGCAACTTGGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTATTGTTGTGATGAAACACCATGACCAAGAGCAACTTGGGGGA  250

seq1  GGAAAGGATTTGTTTTATTTACAGTTTCATGTAACAGTCTGTCACTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTTGTTTTATTTACAGTTTCATGTAACAGTCTGTCACTGAAT  300

seq1  GAAGTCAGGGCAGTAACTCAGGCAGAGCAGGAACTTGGAGGTAGAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGGGCAGTAACTCAGGCAGAGCAGGAACTTGGAGGTAGAAGCTG  350

seq1  AAGTAGACGCCATGAAGGAGGAATGCTTACTAACTTGCTTCACGTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACGCCATGAAGGAGGAATGCTTACTAACTTGCTTCACGTGGCTT  400

seq1  GCTCAGCCTGCTTTCTTACAGCATTCAGAACCACAAGTCCTGGGACGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTGCTTTCTTACAGCATTCAGAACCACAAGTCCTGGGACGATG  450

seq1  CCACTCACAATGGGCTGGGCTCTACCCCATCAATCATCTCTTAAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACAATGGGCTGGGCTCTACCCCATCAATCATCTCTTAAGAAAAT  500

seq1  GCCCTACAGGTTTGCCTACAGCCCAATCTTATAGAAGCAATTTCTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACAGGTTTGCCTACAGCCCAATCTTATAGAAGCAATTTCTCAACT  550

seq1  CTATCTCTGAGATGGCTCCAGCTTGACATAAAACTAGGCAACATATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGAGATGGCTCCAGCTTGACATAAAACTAGGCAACATATGTAG  600

seq1  GTATAAGCATCAAACATCTGTTTTACTTAAGCAAAAGAGAATCTTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCATCAAACATCTGTTTTACTTAAGCAAAAGAGAATCTTTCCTC  650

seq1  ATTGAAATGCTGGATGCTTTTCACATCC-TTCAGACATTGATGTCTTTGT  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGAAATGCTGGATGCTTTTCACATCCTTTCAGACATTGATGTCTTTGT  700

seq1  TAGGAGAATGGAGAGGGACCAGCTTATTGCTTTGAAAACTGCCTAACAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATGGAGAGGGACCAGCTTATTGCTTTGAAAACTGCCTAACAAC  750

seq1  TTGACATCAAGGAAGTTTGTCTGGATTTATCCATAGAGATGATTCAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCAAGGAAGTTTGTCTGGATTTATCCATAGAGATGATTCAGGGA  800

seq1  ATAGAAATGTAATTGGTACTTTGTAATAAGATCAGATCTGGAGATGGTAT  849
      |||||||||||||||||||||||||||||||||||||||||| | || ||
seq2  ATAGAAATGTAATTGGTACTTTGTAATAAGATCAGATCTGGA-AAGGGAT  849

seq1  ATATTTTTCCCACATT  865
      ||||||||||||||||
seq2  ATATTTTTCCCACATT  865