BAC Information

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BAC

Clone NameB6Ng01-060B01
Chromosome19 (Build37)
Map Location 20,975,538 - 21,115,655
singlet/doubletdoublet
Overlap geneTmc1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, LOC100042287
Downstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B01.bB6Ng01-060B01.g
ACCDH881157DH881158
length1,1581,138
definitionDH881157|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B01, 5' end.DH881158|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,975,538 - 20,976,705)(21,114,514 - 21,115,655)
sequence
gaattcacatctcaacacttgcaatcgggcttgaggattattataacctt
caacaatgccatttgcattctaatgctcaaaatggaacagttcttttatg
tcttcagcctccggctgtcagaacaaggaagctggggagaggatagttag
agatccatcaagatacacacgcgtttctcctctgttccccttggcagcta
tcctccccaattctatgtttcctttaagaaccttatttttcaataaggat
aataacttaaaggtgaagatgtctttgaagtgtccttagaatttttaaat
tagccctgtctcaagagaaaaggggggaaaattgaaacagagtgaaggaa
attctgtttctcaaaggaagcctaatctgttaattacacccaaaaacttc
atttgataaaattcaacttgaaatacttgtggtggaagcaagtgctttga
agcccccttcaaaggaatttttcttctctctaagcaaatgcagccttctt
tttttttctgtgatcttactgttgaaaaactagaagctaaagaaaacaaa
atctaaacagaagccacatggtgtagtggagcaatgtaatactatactgt
agaaatcaaactgttggcaataggttgttttaattattaggctagtgtct
cgattttaaatacacgctttcatacttaatattatggtatgaggctgcgg
ctctgttaccagccatgtgtttgctttctcaacgctatgttcagactatg
agatttactaagtgccctccatcttttcctgtggcttcctgcctacttct
ttttgcctctcagactgacacttcctccctagcatcactttactccagga
gctaaaagctcctcccagaactggaagtgattctattctggcaattctag
cagaattttcccaatgctagtagaatttgcttccccatctcctctctgtg
ggaccagcttccactttcagctcctgggtttctccttcctctcgcttgac
atgttcactctaacccttctcaggattccagctcacagttgctagctgct
tttacaggtggtgcgatcctattcatttcctgcttgcttcctcaagatct
agtaggtatttacttacacttgctaaccactcttatacggaattctcaga
ttccactc
gaattcatttcactttgaattttctggttcaatttagacttcaaagtagg
ctggacgtgacctgaaagactttatcaagaatcagatgcagcaggggctg
ggctagaatggagaagctctgcctctcctgactgggagagcaggattgct
cactgtcccgagtgttcttgtcttccaagcactgtctgttagggctgcag
taaaggcctattccaggaaaagtagtctgctctagagaatagagcctctg
gcatgggtggagacataactttctttccaactggagagggtcaaggacaa
ggttaagggtctgtccctgagaggcaggtctttaagccaagagacagagg
taagaagaaaaagtttccagttaataaaattttgtatgcctccttcccag
aattcttgatccccagtgcagtccctgccctggcagcagccatgctgttt
gcctgggtctgtccacctctctcagtcccaactcttcccccctccttctc
tccctcctcctcctctttcctgtctctttcttttggatgctgaccggaac
acagagaacacagatttgcttgttcttatacttggggctgccttgctcgt
tttctgaagtccatttccaggcatgtggtgagacttcacacctgttctca
aatggcatggtttttggattgttttggtcattttggtagtttgttttttg
tttttgtttttgttttttgttcccttcatttttctcctctgggcagcttc
tgaggtttgcagtttgcctgccctgggagttttctttataaactgtaata
aacttgccctcagtttccatttgacttttttcttaaatcattttattact
gaaattaccaatgctaaagcgtggtgctgaatcccctgtatcaatcacat
tctttggatgagtggaccgctattttggaggtgagtgactttaaaggtct
ggtaagctcacttgcctgttttgcagatggggagaaacaattgaggtggc
ttcatgagctacactcatattaatcaaataggaggaaaggccgactcagc
caaatgaggggagcttgctggggctctgggaacccccgacctttctatgt
tggacttgaaaaagaaaaggtgggtctcctagctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20975538_20976705
seq2: B6Ng01-060B01.b_47_1204

seq1  GAATTCACATCTCAACACTTGCAATCGGGCTTGAGGATTATTATAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTCAACACTTGCAATCGGGCTTGAGGATTATTATAACCTT  50

seq1  CAACAATGCCATTTGCATTCTAATGCTCAAAATGGAACAGTTCTTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGCCATTTGCATTCTAATGCTCAAAATGGAACAGTTCTTTTATG  100

seq1  TCTTCAGCCTCCGGCTGTCAGAACAAGGAAGCTGGGGAGAGGATAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCCTCCGGCTGTCAGAACAAGGAAGCTGGGGAGAGGATAGTTAG  150

seq1  AGATCCATCAAGATACACACGCGTTTCTCCTCTGTTCCCCTTGGCAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATCAAGATACACACGCGTTTCTCCTCTGTTCCCCTTGGCAGCTA  200

seq1  TCCTCCCCAATTCTATGTTTCCTTTAAGAACCTTATTTTTCAATAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAATTCTATGTTTCCTTTAAGAACCTTATTTTTCAATAAGGAT  250

seq1  AATAACTTAAAGGTGAAGATGTCTTTGAAGTGTCCTTAGAATTTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAAAGGTGAAGATGTCTTTGAAGTGTCCTTAGAATTTTTAAAT  300

seq1  TAGCCCTGTCTCAAGAGAAAAGGGGGGAAAATTGAAACAGAGTGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGTCTCAAGAGAAAAGGGGGGAAAATTGAAACAGAGTGAAGGAA  350

seq1  ATTCTGTTTCTCAAAGGAAGCCTAATCTGTTAATTACACCCAAAAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCTCAAAGGAAGCCTAATCTGTTAATTACACCCAAAAACTTC  400

seq1  ATTTGATAAAATTCAACTTGAAATACTTGTGGTGGAAGCAAGTGCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAAATTCAACTTGAAATACTTGTGGTGGAAGCAAGTGCTTTGA  450

seq1  AGCCCCCTTCAAAGGAATTTTTCTTCTCTCTAAGCAAATGCAGCCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTTCAAAGGAATTTTTCTTCTCTCTAAGCAAATGCAGCCTTCTT  500

seq1  TTTTTTTCTGTGATCTTACTGTTGAAAAACTAGAAGCTAAAGAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGTGATCTTACTGTTGAAAAACTAGAAGCTAAAGAAAACAAA  550

seq1  ATCTAAACAGAAGCCACATGGTGTAGTGGAGCAATGTAATACTATACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAGAAGCCACATGGTGTAGTGGAGCAATGTAATACTATACTGT  600

seq1  AGAAATCAAACTGTTGGCAATAGGTTGTTTTAATTATTAGGCTAGTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAACTGTTGGCAATAGGTTGTTTTAATTATTAGGCTAGTGTCT  650

seq1  CGATTTTAAATACACGCTTTCATACTTAATATTATGGTATGAGGCTGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTAAATACACGCTTTCATACTTAATATTATGGTATGAGGCTGCGG  700

seq1  CTCTGTTACCAGCCATGTGTTTGCTTTCTCAACGCTATGTTCAGACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTACCAGCCATGTGTTTGCTTTCTCAACGCTATGTTCAGACTATG  750

seq1  AGATTTACTAAGTGCCCTCCATCTTTTCCTGTGGCTTCCTGCCTACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACTAAGTGCCCTCCATCTTTTCCTGTGGCTTCCTGCCTACTTCT  800

seq1  TTTTGCCTCTCAGACTGACACTTCCTCCCTAGCATCACTTTACTCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCTCAGACTGACACTTCCTCCCTAGCATCACTTTACTCCAGGA  850

seq1  GCTAAAAGCCCCTCCCAGAACTGGAAGTGATTCTATTCTGGCAATTCTAG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGCTCCTCCCAGAACTGGAAGTGATTCTATTCTGGCAATTCTAG  900

seq1  CAGAATTCTCCCAATGCTAGTAGAATTTGCTTCCCCATCTCCCCCCTGTG  950
      ||||||| |||||||||||||||||||||||||||||||||| | |||||
seq2  CAGAATTTTCCCAATGCTAGTAGAATTTGCTTCCCCATCTCCTCTCTGTG  950

seq1  GGACCAGCTTCCACTTTCAGCTCCCTGGGTTTCTCCTTCCTCTCGGCTTG  1000
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GGACCAGCTTCCACTTTCAGCT-CCTGGGTTTCTCCTTCCTCTC-GCTTG  998

seq1  ACATGTTCACTCTAACCCTTCCCAGGATTCCAGCTCACAGTTGCTAGCTG  1050
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATGTTCACTCTAACCCTTCTCAGGATTCCAGCTCACAGTTGCTAGCTG  1048

seq1  CTTTTTACAGTTGGTGCCATCCTATTTCATATTCCTGCTTGCCTTCTCCA  1100
      | |||||||| |||||| |||||| ||||| ||||||||||| | |||  
seq2  C-TTTTACAGGTGGTGCGATCCTA-TTCAT-TTCCTGCTTGCTTCCTC--  1093

seq1  AAGATCTAGTTAAGTATTTTACTTACAACTGCTAACAACTCTCATACAGG  1150
      ||||||||| || ||| ||||||||||  ||||||| ||||| |||| | 
seq2  AAGATCTAG-TAGGTA-TTTACTTACACTTGCTAACCACTCTTATACGGA  1141

seq1  ATTCTCAGTATTCAACTC  1168
      |||||||| |||| ||||
seq2  ATTCTCAG-ATTCCACTC  1158

seq1: chr19_21114514_21115655
seq2: B6Ng01-060B01.g_69_1206 (reverse)

seq1  GCAGAAGCTAAGAGA-CCACCTTTTTTTTCTTTAGTCCACACATAGAAAA  49
      |||| ||||| |||| ||||||||| ||| |  |||||| ||||||||| 
seq2  GCAG-AGCTAGGAGACCCACCTTTTCTTTTTCAAGTCCA-ACATAGAAAG  48

seq1  GTTGGGGGTTCCCAGAG-CCCAGCAGCATCCCTCCAATTTTGGCTG-GTT  97
      || |||||||||||||| |||||||   ||||  ||  |||||||| || 
seq2  GTCGGGGGTTCCCAGAGCCCCAGCAAGCTCCCCTCA--TTTGGCTGAGTC  96

seq1  GGCC-TTCCTCCTAATTGATAATTATGAGTTGTAGCTCATGAGGCCACTT  146
      |||| ||||||||| ||||| | |||||| |||||||||||| ||||| |
seq2  GGCCTTTCCTCCTATTTGATTAATATGAG-TGTAGCTCATGAAGCCACCT  145

seq1  CAATTGTTTCTACCCATCTGCAAAACAGGCAAGTGGAGCTTACCAGACCT  196
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  CAATTGTTTCTCCCCATCTGCAAAACAGGCAAGT-GAGCTTACCAGACCT  194

seq1  TTAAAGTCACTCACCTCCAAAATAGCGGTCCACTCATCCAAAGAATGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCACTCACCTCCAAAATAGCGGTCCACTCATCCAAAGAATGTGA  244

seq1  TTGATACAGGGGATTCAGCACCACGCTTTAGCATTGGTAATTTCAGTAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAGGGGATTCAGCACCACGCTTTAGCATTGGTAATTTCAGTAAT  294

seq1  AAAATGGATTTAAGAAAAAAGTCAAATGGAAACTGGAGGGCAAGTTTATT  346
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAT-GATTTAAGAAAAAAGTCAAATGGAAACT-GAGGGCAAGTTTATT  342

seq1  ACAGTTTATAAAGAAAACTCCCAGGGCAGGCAAACTGCAAACCTCAGAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATAAAGAAAACTCCCAGGGCAGGCAAACTGCAAACCTCAGAAG  392

seq1  CTGCCCAGAGGAGAAAAATGAAGGGAACAAAAAACAAAAACAAAAACAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGAGGAGAAAAATGAAGGGAACAAAAAACAAAAACAAAAACAAA  442

seq1  AAACAAACTACCAAAATGACCAAAACAATCCAAAAACCATGCCATTTGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACTACCAAAATGACCAAAACAATCCAAAAACCATGCCATTTGAG  492

seq1  AACAGGTGTGAAGTCTCACCACATGCCTGGAAATGGACTTCAGAAAACGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGTGAAGTCTCACCACATGCCTGGAAATGGACTTCAGAAAACGA  542

seq1  GCAAGGCAGCCCCAAGTATAAGAACAAGCAAATCTGTGTTCTCTGTGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAGCCCCAAGTATAAGAACAAGCAAATCTGTGTTCTCTGTGTTC  592

seq1  CGGTCAGCATCCAAAAGAAAGAGACAGGAAAGAGGAGGAGGAGGGAGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAGCATCCAAAAGAAAGAGACAGGAAAGAGGAGGAGGAGGGAGAGA  642

seq1  AGGAGGGGGGAAGAGTTGGGACTGAGAGAGGTGGACAGACCCAGGCAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGGGAAGAGTTGGGACTGAGAGAGGTGGACAGACCCAGGCAAAC  692

seq1  AGCATGGCTGCTGCCAGGGCAGGGACTGCACTGGGGATCAAGAATTCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTGCTGCCAGGGCAGGGACTGCACTGGGGATCAAGAATTCTGG  742

seq1  GAAGGAGGCATACAAAATTTTATTAACTGGAAACTTTTTCTTCTTACCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGCATACAAAATTTTATTAACTGGAAACTTTTTCTTCTTACCTC  792

seq1  TGTCTCTTGGCTTAAAGACCTGCCTCTCAGGGACAGACCCTTAACCTTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGGCTTAAAGACCTGCCTCTCAGGGACAGACCCTTAACCTTGT  842

seq1  CCTTGACCCTCTCCAGTTGGAAAGAAAGTTATGTCTCCACCCATGCCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCCTCTCCAGTTGGAAAGAAAGTTATGTCTCCACCCATGCCAGA  892

seq1  GGCTCTATTCTCTAGAGCAGACTACTTTTCCTGGAATAGGCCTTTACTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATTCTCTAGAGCAGACTACTTTTCCTGGAATAGGCCTTTACTGC  942

seq1  AGCCCTAACAGACAGTGCTTGGAAGACAAGAACACTCGGGACAGTGAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAACAGACAGTGCTTGGAAGACAAGAACACTCGGGACAGTGAGCA  992

seq1  ATCCTGCTCTCCCAGTCAGGAGAGGCAGAGCTTCTCCATTCTAGCCCAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTCTCCCAGTCAGGAGAGGCAGAGCTTCTCCATTCTAGCCCAGC  1042

seq1  CCCTGCTGCATCTGATTCTTGATAAAGTCTTTCAGGTCACGTCCAGCCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCATCTGATTCTTGATAAAGTCTTTCAGGTCACGTCCAGCCTA  1092

seq1  CTTTGAAGTCTAAATTGAACCAGAAAATTCAAAGTGAAATGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGTCTAAATTGAACCAGAAAATTCAAAGTGAAATGAATTC  1138