BAC Information

Click to search

BAC

Clone NameB6Ng01-061G11
Chromosome19 (Build37)
Map Location 22,218,505 - 22,353,060
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061G11.bB6Ng01-061G11.g
ACCDH882089DH882090
length1,1791,125
definitionDH882089|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G11, 5' end.DH882090|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,351,863 - 22,353,060)(22,218,505 - 22,219,650)
sequence
gaattcttccgaagagtccaagtctcacacagttccgtatagacaaacat
ggtcctatgtaaatataaaatatagtactaaaaacaaggatggtaattat
atctacagagaatatgcattgtaacgcaaggatctggcaggaaatattgt
ccctggaagtgcatttaaatatttcagagcacaagtcacatcttttgtgc
catgtattaaaggagccaagtttatgctactgacaaccagttgtatttag
tttgggtgtacggcttcactgaaggatccctccgcagtctctgttttacc
agagtctccttttgcaacctaggaattcagggcttcttagatcccctcac
taacactgaaaatattccccacgtattgcacaagaagctcccaaaggaaa
gacatggcccttctcatggcaaatgttccttttattctcctcagagacag
agattgttctcttattttgtagattggaaagatgaggctgtggatgatcc
agtgacctacctgcagttctggctagtccaagatctaagctgtgagtgcg
actataaaccatgatttatgtgttacaccagctgagtgcatctattatac
gttacttggacatttgtttctatctaaagttattgaccacatctgttttt
acattttggttacaaccaataagcctaagatgcagagggcttgaacatga
tcgttagaaatccgagccaaaaaagaaaaccttctccaggaataacattc
cctggaaactgactgatttttatcataccaggaggctaacatgggaaacc
acctctgcatatctgacttcgttctgttgctactgctggtattttcctct
actctacgggactggtaaataaaattgaccacttcatgaaatgggaattt
tcatgaaaatagttacatggagctctctgaagatacttgatgtagttaaa
aataaccaagctgatcattttgattctaattttgttagattgtcaggggg
taaatgggccttcaggtacttgagcatgatttcaaaataggcgaagtctg
ttagaaagttatcgggcgaattaagatgagatcttaacctgatatccaag
tccctaaagcagcctaggaaggggtcaccctctactctgaagcagtggtg
ctgtatcacatcgcttactgagcaatgac
gaattccctgcagcgctggtccgttatagagtgaaccaattcttgacagg
ttgattttgtatagtgccctttacgcattgtgttaaaactagaaaaagca
acagaggagtattgcttgggaatacaattaaattttcttgttatactgat
ttttttgaatgaagagaaggaagtccatttaataacaatggtccaccttg
tttaagcattttgtaaatgctacttttgagtagttagtaaaactattgtc
accattatagtgaataaaattcagttgtctctttgagggcttcaaatata
ttaggaagaaagaaattcaaacaagtttgggggaaaaatatccctgcata
attttaaatttgttttcaattctaaaatataccagaacagtttctcctgc
cactgtttactgagatctttaaaaaaaaaacaaaccaattgaatcgttaa
aaattactaacaaatagcaaaagagccattaaattcatttggctagacca
gctggaagtattgactttttcatttgcaaagacaaagaaggcctgggaaa
ccaaaaattattctagagaatacatgtttaaaaaaagcttattctaggag
aggtggctcagcagttaagagcactgactgctcttccagaggtcctgagt
tcaattcccagcaaccacatgttggctcacaaccatctgtaatggaatct
gatgccctcttctggtgtgtcttgaagacagtaactcacatacataaaat
aaataaatctttaaaagcaagaataaacaaacaaacaaaaaacaaactta
gtctagggattggagagatgactcagcagttaagagcatttgctgctctt
ccagaaggcctgagttctgttcccagcacccaggtcagattgcttaagcc
tgtgcctccaactccaaagaatctgacacccttttctggactcttggcca
cacacacacacacacacacacacacacacacaaacccccccccacaatac
gaacacacacatacacacaccaacaccacatcaaccccaaaaccaaagga
ctcgaacaaacacaacacaacacacaactacatcactctacatcggggac
ggggtggcaggcaaaataaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22351863_22353060
seq2: B6Ng01-061G11.b_48_1226 (reverse)

seq1  GTCATTGCTTTCAGTAATGCTGATGTGGGCTACAGGCACCACTGCCTCCC  50
      ||||||||  ||||||| || |||||  | |||| |||||||||| |  |
seq2  GTCATTGC--TCAGTAA-GC-GATGT--GATACA-GCACCACTGCTT--C  41

seq1  TGAGTAGA-GGTGACCCCTTTCCTAAGCTCTGCTTTTAGGGACTTCGATA  99
       ||||||| ||||||||| |||||| |  |||| ||||||||||| ||||
seq2  AGAGTAGAGGGTGACCCC-TTCCTAGG--CTGC-TTTAGGGACTTGGATA  87

seq1  TCAGGTTAAGATCTCATCCTTAAATTCG-CCGTGAACTTTCTAACAGACT  148
      ||||||||||||||||||  | |||||| |||  ||||||||||||||||
seq2  TCAGGTTAAGATCTCATC--TTAATTCGCCCGATAACTTTCTAACAGACT  135

seq1  TCGCCTATTTTTGAAATCATGCTTCAAGTTACCTTGAGGCCCATTTTACC  198
      ||||||| |||||||||||||| ||||| |||||  ||||||| ||||||
seq2  TCGCCTA-TTTTGAAATCATGC-TCAAG-TACCTGAAGGCCCA-TTTACC  181

seq1  ACCTGACAATCTAAACAAAATTAGAATCAAAATTGATCAGCTTGGTTATT  248
       ||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CCCTGACAATCT-AACAAAATTAGAATCAAAA-TGATCAGCTTGGTTATT  229

seq1  TTTAACTACATCAAGTATCTTCAGAGAGCTCCATGTAACTATTTTCATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTACATCAAGTATCTTCAGAGAGCTCCATGTAACTATTTTCATGA  279

seq1  AAATTCCCATTTCATGAAGTGGTCAATTTTATTTACCAGTCCCGTAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCATTTCATGAAGTGGTCAATTTTATTTACCAGTCCCGTAGAGT  329

seq1  AGAGGAAAATACCAGCAGTAGCAACAGAACGAAGTCAGATATGCAGAGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAATACCAGCAGTAGCAACAGAACGAAGTCAGATATGCAGAGGT  379

seq1  GGTTTCCCATGTTAGCCTCCTGGTATGATAAAAATCAGTCAGTTTCCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCATGTTAGCCTCCTGGTATGATAAAAATCAGTCAGTTTCCAGG  429

seq1  GAATGTTATTCCTGGAGAAGGTTTTCTTTTTTGGCTCGGATTTCTAACGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTATTCCTGGAGAAGGTTTTCTTTTTTGGCTCGGATTTCTAACGA  479

seq1  TCATGTTCAAGCCCTCTGCATCTTAGGCTTATTGGTTGTAACCAAAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCAAGCCCTCTGCATCTTAGGCTTATTGGTTGTAACCAAAATGT  529

seq1  AAAAACAGATGTGGTCAATAACTTTAGATAGAAACAAATGTCCAAGTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGATGTGGTCAATAACTTTAGATAGAAACAAATGTCCAAGTAAC  579

seq1  GTATAATAGATGCACTCAGCTGGTGTAACACATAAATCATGGTTTATAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATAGATGCACTCAGCTGGTGTAACACATAAATCATGGTTTATAGT  629

seq1  CGCACTCACAGCTTAGATCTTGGACTAGCCAGAACTGCAGGTAGGTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTCACAGCTTAGATCTTGGACTAGCCAGAACTGCAGGTAGGTCACT  679

seq1  GGATCATCCACAGCCTCATCTTTCCAATCTACAAAATAAGAGAACAATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCCACAGCCTCATCTTTCCAATCTACAAAATAAGAGAACAATCT  729

seq1  CTGTCTCTGAGGAGAATAAAAGGAACATTTGCCATGAGAAGGGCCATGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGAGGAGAATAAAAGGAACATTTGCCATGAGAAGGGCCATGTC  779

seq1  TTTCCTTTGGGAGCTTCTTGTGCAATACGTGGGGAATATTTTCAGTGTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGGGAGCTTCTTGTGCAATACGTGGGGAATATTTTCAGTGTTA  829

seq1  GTGAGGGGATCTAAGAAGCCCTGAATTCCTAGGTTGCAAAAGGAGACTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGATCTAAGAAGCCCTGAATTCCTAGGTTGCAAAAGGAGACTCT  879

seq1  GGTAAAACAGAGACTGCGGAGGGATCCTTCAGTGAAGCCGTACACCCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACAGAGACTGCGGAGGGATCCTTCAGTGAAGCCGTACACCCAAA  929

seq1  CTAAATACAACTGGTTGTCAGTAGCATAAACTTGGCTCCTTTAATACATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACAACTGGTTGTCAGTAGCATAAACTTGGCTCCTTTAATACATG  979

seq1  GCACAAAAGATGTGACTTGTGCTCTGAAATATTTAAATGCACTTCCAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAGATGTGACTTGTGCTCTGAAATATTTAAATGCACTTCCAGGG  1029

seq1  ACAATATTTCCTGCCAGATCCTTGCGTTACAATGCATATTCTCTGTAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTCCTGCCAGATCCTTGCGTTACAATGCATATTCTCTGTAGAT  1079

seq1  ATAATTACCATCCTTGTTTTTAGTACTATATTTTATATTTACATAGGACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCATCCTTGTTTTTAGTACTATATTTTATATTTACATAGGACC  1129

seq1  ATGTTTGTCTATACGGAACTGTGTGAGACTTGGACTCTTCGGAAGAATTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTCTATACGGAACTGTGTGAGACTTGGACTCTTCGGAAGAATTC  1179

seq1: chr19_22218505_22219650
seq2: B6Ng01-061G11.g_71_1195

seq1  GAATTCCCTGCAGCGCTGGTCCGTTATAGAGTGAACCAATTCTTGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCAGCGCTGGTCCGTTATAGAGTGAACCAATTCTTGACAGG  50

seq1  TTGATTTTGTATAGTGCCCTTTACGCATTGTGTTAAAACTAGAAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGTATAGTGCCCTTTACGCATTGTGTTAAAACTAGAAAAAGCA  100

seq1  ACAGAGGAGTATTGCTTGGGAATACAATTAAATTTTCTTGTTATACTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGTATTGCTTGGGAATACAATTAAATTTTCTTGTTATACTGAT  150

seq1  TTTTTTGAATGAAGAGAAGGAAGTCCATTTAATAACAATGGTCCACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAATGAAGAGAAGGAAGTCCATTTAATAACAATGGTCCACCTTG  200

seq1  TTTAAGCATTTTGTAAATGCTACTTTTGAGTAGTTAGTAAAACTATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCATTTTGTAAATGCTACTTTTGAGTAGTTAGTAAAACTATTGTC  250

seq1  ACCATTATAGTGAATAAAATTCAGTTGTCTCTTTGAGGGCTTCAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATAGTGAATAAAATTCAGTTGTCTCTTTGAGGGCTTCAAATATA  300

seq1  TTAGGAAGAAAGAAATTCAAACAAGTTTGGGGGAAAAATATCCCTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGAAAGAAATTCAAACAAGTTTGGGGGAAAAATATCCCTGCATA  350

seq1  ATTTTAAATTTGTTTTCAATTCTAAAATATACCAGAACAGTTTCTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTGTTTTCAATTCTAAAATATACCAGAACAGTTTCTCCTGC  400

seq1  CACTGTTTACTGAGATCTTTAAAAAAAAAACAAACCAATTGAATCGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTACTGAGATCTTTAAAAAAAAAACAAACCAATTGAATCGTTAA  450

seq1  AAATTACTAACAAATAGCAAAAGAGCCATTAAATTCATTTGGCTAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTAACAAATAGCAAAAGAGCCATTAAATTCATTTGGCTAGACCA  500

seq1  GCTGGAAGTATTGACTTTTTCATTTGCAAAGACAAAGAAGGCCTGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGTATTGACTTTTTCATTTGCAAAGACAAAGAAGGCCTGGGAAA  550

seq1  CCAAAAATTATTCTAGAGAATACATGTTTAAAAAAAGCTTATTCTAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTATTCTAGAGAATACATGTTTAAAAAAAGCTTATTCTAGGAG  600

seq1  AGGTGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  650

seq1  TCAATTCCCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGAATCT  700

seq1  GATGCCCTCTTCTGGTGTGTCTTGAAGACAGTAACTCACATACATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTCTGGTGTGTCTTGAAGACAGTAACTCACATACATAAAAT  750

seq1  AAATAAATCTTTAAAAGCAAGAATAAACAAACAAACAAAAAACAAACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTAAAAGCAAGAATAAACAAACAAACAAAAAACAAACTTA  800

seq1  GTCTAGGGATTGGAGAGATGACTCAGCAGTTAAGAGCATTTGCTGCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGATTGGAGAGATGACTCAGCAGTTAAGAGCATTTGCTGCTCTT  850

seq1  CCAGAAGGCCTGAGTTCTGTTCCCAGCACCCAGGTCAGATTGCTTAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGCCTGAGTTCTGTTCCCAGCACCCAGGTCAGATTGCTTAAGCC  900

seq1  TGTGCCTCCAACTCCAAAGAATCTGACACCCTTTTCTGGACTCTTTGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGCCTCCAACTCCAAAGAATCTGACACCCTTTTCTGGACTC-TTGGCC  949

seq1  ACACACACACACACACACACACACACACACACAAACCCCCCCCCACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  ACACACACACACACACACACACACACACACACAAACCCCCCCCCACA-AT  998

seq1  ACCACACACACACATACACACACCCAAACACACACACACACACCCAAACA  1050
      || | |||||||||||||||||||  |||||   ||||   |||| || |
seq2  ACGA-ACACACACATACACACACC--AACAC---CACATCAACCCCAAAA  1042

seq1  CACACAGACACAGACACACACACACACACACACACACACACACACACACA  1100
      | || ||     ||| |  ||| ||||| ||||| |||||||   |||  
seq2  C-CAAAG-----GACTCGAACAAACACA-ACACA-ACACACAACTACA-T  1083

seq1  CACACACACACACGGGGACGGGGTGGCAGGGCAAGATTAAAAAAGA  1146
      ||| |  |||  |||||||||||||||| ||||| | |||||||||
seq2  CACTC-TACA-TCGGGGACGGGGTGGCA-GGCAA-AATAAAAAAGA  1125