BAC Information

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BAC

Clone NameB6Ng01-062A17
Chromosome19 (Build37)
Map Location 24,251,445 - 24,379,858
singlet/doubletdoublet
Overlap geneFxn, LOC667743, Pip5k1b, LOC100042457
Upstream geneSmc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A17.bB6Ng01-062A17.g
ACCDH882558DH882559
length1,157769
definitionDH882558|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A17, 5' end.DH882559|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,251,445 - 24,252,615)(24,379,090 - 24,379,858)
sequence
gaattcaggagccgagcataccttgggaggggcccgaggaaggataatga
atgagtttagggatgtagagcagtcaagggctatgtgtcatccaggtgga
gatgctcagtagctccacactgagcatgtcagctccacgaggtattaatg
agcacctggctagagagctctggaagtcaccaatgagttgtgaaagttgc
catcaagagaaggcaagagaaggcatgacaccttttagacacctgatgca
gttagaggcaaaggtggaccaaagacaggacctgcctataggaattacaa
actctgctggacaaaaaaataagtaaataaaaatcaaagcaaacctgaaa
gggcagtgttggtatcaggacctccaaaacccgtgacatcacggcacaac
cggcacacctgttgccaagcaacagccaccatattcccagaatccattcc
acctcccacctttacctgactatgtcaccatccatatataaaggtccctc
tgatctctctcctccccccttctctctctctccatcaccaccttgccctt
ctctctctctcaataaacctcacatggaactgtttggcctggtgtggtcc
tactgaggctgtgcaaagatcacaacaagcagaagacactttctggagaa
aggtggtcaaaaagccataggaagagtgagctttaaaagggggaacatag
tcagttaacacagaactgtgaggaagtcagtcaagaactgactgggactg
gagatacagcttggttggtagacttagccagcacaggaagtcctgagttt
gacccccagtacaacataaacgatgtggtggcacactcagaagttgggga
caggagaattagatgtcccctttgctatatactgagttgaaggccagcct
gggctatatgacatcatccctctttcaaaagagaaatgagaagaaataca
gactctgaacctaattgcttcagatagacccaccgctgagttggccaaat
tgttccatatcaaagtttcatacttcccaagtgtccattcctagtcagaa
gagatgagtcatctatggccagggataagaagctattaaatctatctact
gacgaaaggcagcatagtgtagtacgaagtcttactgggcactcttaccg
gagaatt
gaattccttacacctgtatgatggccagacctttagccacagtcccaaca
ccagcatcaccctcttgtatctggcgttctgcccttgaaaaccatgggaa
acttcggctgcttaaaagcattactttcgcagggcgtggtggcgcacgcc
tttaatcccagcacttgggaggcagaggcaggcagatttctgagttcgag
gccagcctggtctacagagtgagttccaggacagccaggactacacagag
aaaccctatctcaaaaaaaaaaattactttcattttggatgtggagggat
aattgcgcatccctggctgatacccaatttaaatattgtcaaaacagacc
agctcaacctttatttaatccaagcactgaggaggcagaggcaaatggat
ctctgtgactttgatgccagctacctatgttgttcaggcttttagtgttt
ccctcgggagtccacgcaggagatcctcacagagcccatgggagcagcgt
tctgtattgtcactccaggcgtcatccctggaccagctcagcatgggcat
cacctagggcttagtcagaaatttaatccatggactctacccctagaccc
tttgcttcatggatctcaatggaaaagtccaagaagttgcattgtgacca
ggcctcccgagcctctgatgtacagtgaagccgagaaccactgaggctgc
tgaacttttcaggtccataaccaggaaggaaagaaagagaggggaaaaaa
gaatgcagggaggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24251445_24252615
seq2: B6Ng01-062A17.b_47_1203

seq1  GAATTCAGGAGCCGAGCATACCTTGGGAGGGGCCCGAGGAAGGATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGCCGAGCATACCTTGGGAGGGGCCCGAGGAAGGATAATGA  50

seq1  ATGAGTTTAGGGATGTAGAGCAGTCAAGGGCTATGTGTCATCCAGGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTAGGGATGTAGAGCAGTCAAGGGCTATGTGTCATCCAGGTGGA  100

seq1  GATGCTCAGTAGCTCCACACTGAGCATGTCAGCTCCACGAGGTATTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGTAGCTCCACACTGAGCATGTCAGCTCCACGAGGTATTAATG  150

seq1  AGCACCTGGCTAGAGAGCTCTGGAAGTCACCAATGAGTTGTGAAAGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGCTAGAGAGCTCTGGAAGTCACCAATGAGTTGTGAAAGTTGC  200

seq1  CATCAAGAGAAGGCAAGAGAAGGCATGACACCTTTTAGACACCTGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAGAAGGCAAGAGAAGGCATGACACCTTTTAGACACCTGATGCA  250

seq1  GTTAGAGGCAAAGGTGGACCAAAGACAGGACCTGCCTATAGGAATTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGCAAAGGTGGACCAAAGACAGGACCTGCCTATAGGAATTACAA  300

seq1  ACTCTGCTGGACAAAAAAATAAGTAAATAAAAATCAAAGCAAACCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGGACAAAAAAATAAGTAAATAAAAATCAAAGCAAACCTGAAA  350

seq1  GGGCAGTGTTGGTATCAGGACCTCCAAAACCCGTGACATCACGGCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGTTGGTATCAGGACCTCCAAAACCCGTGACATCACGGCACAAC  400

seq1  CGGCACACCTGTTGCCAAGCAACAGCCACCATATTCCCAGAATCCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACACCTGTTGCCAAGCAACAGCCACCATATTCCCAGAATCCATTCC  450

seq1  ACCTCCCACCTTTACCTGACTATGTCACCATCCATATATAAAGGTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCACCTTTACCTGACTATGTCACCATCCATATATAAAGGTCCCTC  500

seq1  TGATCTCTCTCCTCCCCCCTTCTCTCTCTCTCCATCACCACCTTGCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTCTCCTCCCCCCTTCTCTCTCTCTCCATCACCACCTTGCCCTT  550

seq1  CTCTCTCTCTCAATAAACCTCACATGGAACTGTTTGGCCTGGTGTGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCAATAAACCTCACATGGAACTGTTTGGCCTGGTGTGGTCC  600

seq1  TACTGAGGCTGTGCAAAGATCACAACAAGCAGAAGACACTTTCTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGCTGTGCAAAGATCACAACAAGCAGAAGACACTTTCTGGAGAA  650

seq1  AGGTGGTCAAAAAGCCATAGGAAGAGTGAGCTTTAAAAGGGGGAACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCAAAAAGCCATAGGAAGAGTGAGCTTTAAAAGGGGGAACATAG  700

seq1  TCAGTTAACACAGAACTGTGAGGAAGTCAGTCAAGAACTGACTGGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAACACAGAACTGTGAGGAAGTCAGTCAAGAACTGACTGGGACTG  750

seq1  GAGATACAGCTTGGTTGGTAGACTTAGCCAGCACAGGAAGTCCTGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGCTTGGTTGGTAGACTTAGCCAGCACAGGAAGTCCTGAGTTT  800

seq1  GACCCCCAGTACAACATAAACGATGTGGTGGCACACTCAGAAGTTGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCAGTACAACATAAACGATGTGGTGGCACACTCAGAAGTTGGGGA  850

seq1  CAGGAGAATTAGATGTCCCCTTTGCTATATACTGAGTTGAAGGCCAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATTAGATGTCCCCTTTGCTATATACTGAGTTGAAGGCCAGCCT  900

seq1  GGGCTATATGACATCATCCCTCTTTCAAAAGAGAAATGAGAAGAAATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATATGACATCATCCCTCTTTCAAAAGAGAAATGAGAAGAAATACA  950

seq1  GACTCTGAACCTAATTGCTTCAGATAGACCCACCGCTGAAGTTGGCCAAA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GACTCTGAACCTAATTGCTTCAGATAGACCCACCGCTG-AGTTGGCC-AA  998

seq1  ATTGTTCCATATCAAAGTTTCATTACTTCCCAAGGTGTCCATTCCTAGTC  1050
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  ATTGTTCCATATCAAAGTTTCA-TACTTCCCAA-GTGTCCATTCCTAGTC  1046

seq1  AGAAGAGATGGAAGTCATCTATGGCCAGGGATAAAGAGCTATTAAATCCT  1100
      ||||||||||  ||||||||||||||||||||||  ||||||||||| ||
seq2  AGAAGAGATG--AGTCATCTATGGCCAGGGATAAGAAGCTATTAAAT-CT  1093

seq1  ATCCTACTTGACAGAAAGCAGGCATAGTGTAGTAACCGATGTCTATAACC  1150
      || |||| |||| |||||   |||||||||||||  ||| |||  | || 
seq2  AT-CTAC-TGAC-GAAAGGCAGCATAGTGTAGTA--CGAAGTC--TTACT  1136

seq1  TGGCACTCTTACAGGAGAATT  1171
       ||||||||||| ||||||||
seq2  GGGCACTCTTACCGGAGAATT  1157

seq1: chr19_24379090_24379858
seq2: B6Ng01-062A17.g_67_835 (reverse)

seq1  TCCCTTCCTCCCTGCATTCTTTTTTCCCCTCTCTTTCTTTCCTTCCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTCCCTGCATTCTTTTTTCCCCTCTCTTTCTTTCCTTCCTGGT  50

seq1  TATGGACCTGAAAAGTTCAGCAGCCTCAGTGGTTCTCGGCTTCACTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACCTGAAAAGTTCAGCAGCCTCAGTGGTTCTCGGCTTCACTGTAC  100

seq1  ATCAGAGGCTCGGGAGGCCTGGTCACAATGCAACTTCTTGGACTTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGCTCGGGAGGCCTGGTCACAATGCAACTTCTTGGACTTTTCCA  150

seq1  TTGAGATCCATGAAGCAAAGGGTCTAGGGGTAGAGTCCATGGATTAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCCATGAAGCAAAGGGTCTAGGGGTAGAGTCCATGGATTAAATT  200

seq1  TCTGACTAAGCCCTAGGTGATGCCCATGCTGAGCTGGTCCAGGGATGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTAAGCCCTAGGTGATGCCCATGCTGAGCTGGTCCAGGGATGACG  250

seq1  CCTGGAGTGACAATACAGAACGCTGCTCCCATGGGCTCTGTGAGGATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTGACAATACAGAACGCTGCTCCCATGGGCTCTGTGAGGATCTC  300

seq1  CTGCGTGGACTCCCGAGGGAAACACTAAAAGCCTGAACAACATAGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGGACTCCCGAGGGAAACACTAAAAGCCTGAACAACATAGGTAGC  350

seq1  TGGCATCAAAGTCACAGAGATCCATTTGCCTCTGCCTCCTCAGTGCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAAAGTCACAGAGATCCATTTGCCTCTGCCTCCTCAGTGCTTGG  400

seq1  ATTAAATAAAGGTTGAGCTGGTCTGTTTTGACAATATTTAAATTGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAAGGTTGAGCTGGTCTGTTTTGACAATATTTAAATTGGGTAT  450

seq1  CAGCCAGGGATGCGCAATTATCCCTCCACATCCAAAATGAAAGTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGATGCGCAATTATCCCTCCACATCCAAAATGAAAGTAATTTT  500

seq1  TTTTTTTGAGATAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGATAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCA  550

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCT  600

seq1  CCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCTGCGAAAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCTGCGAAAGTAAT  650

seq1  GCTTTTAAGCAGCCGAAGTTTCCCATGGTTTTCAAGGGCAGAACGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGCAGCCGAAGTTTCCCATGGTTTTCAAGGGCAGAACGCCAGA  700

seq1  TACAAGAGGGTGATGCTGGTGTTGGGACTGTGGCTAAAGGTCTGGCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGGGTGATGCTGGTGTTGGGACTGTGGCTAAAGGTCTGGCCATC  750

seq1  ATACAGGTGTAAGGAATTC  769
      |||||||||||||||||||
seq2  ATACAGGTGTAAGGAATTC  769