BAC Information

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BAC

Clone NameB6Ng01-062B15
Chromosome19 (Build37)
Map Location 29,716,060 - 29,850,983
singlet/doubletdoublet
Overlap geneD19Wsu12e, Mlana, 9930021J03Rik
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik
Downstream geneRanbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B15.bB6Ng01-062B15.g
ACCDH882600DH882601
length1,1771,180
definitionDH882600|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B15, 5' end.DH882601|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,716,060 - 29,717,271)(29,849,783 - 29,850,983)
sequence
gaattctatgccccacttctgctcaaaaagaaacaatattagtgacacta
gccctggtgattgttggacggtactttagtcattaatgaaagtgaaacaa
agtaaccgttacctgatccctgctggggcagggggcacaggctgatccct
gctggggcagggggtataggctgatccctgctggggcagggggtacaggc
tgatccctgctggggcagggggtataatccctgttagggcaggggtatag
gctgatgtaagcagcgtgcgtcacttctcagaacatgaaataaacgcttt
ctttccatttgagactgttattttaaaatgaaaagcaagcagtaacactt
ctctttattcagtgaagtgaaattaacaacacttaactttatatatagct
gattaacacgttaaacttcccactcatctccctactctaagggtaccagt
gtcttaggagagaacagaagagggtcacaacacctttgagaatgtgacaa
tccaaagacagtaagaaggctaagtgacaaactgacatctctttccattt
agaatcaccctgaaagtgaagccaccccaaaataactcagatgttcacca
aagacctggcacggcacagcagacctgagaagataaatgaggcccttctg
taggtaacattacttcttgctatcaattcctgggtccagctatgcggctg
agaactttagaatagcacacacaggaaaacaagcacagccaggcaggcct
gtgatccagccctggggtcactaaggcagagccgctgctaagcctcaggc
cagccgagactgcacagctcagatgccgcaataacactcctgaggctgga
gacagcttgggggcagagcatgtacaggtgtcgggttccacccccaccat
gactggcatgcacaaaagaacactcagcctcggtgagttcatccacagac
aggattcagtgacactatttcacttgcatgagtttcacttaagcttctct
tagctataatgatagatacttcttcatactatcagtaggagtatatacaa
ttttagttagatatttctaaactagaaatagagcatttggagtagcatgc
agagcatagacatctgagaaaacaaagttttttagtcattaacatgcatg
gacgctcgatcgaaggctcagtcagcc
gaattctgaagacattttctcatctttctatgtgtgttctttagtgtctc
cattaggtgaagagtttcagaaatgaccatgccactaacttaataaccaa
aggcaccttaacactgattcagcaacaatagtcataatttttttttcatc
tgcttacatttcctctttcattcttttcctaagcactggttacttttctt
gccatctcttcagaaacaggtaattttcctttaacagtacaaagaataat
tcattgatatttatgtattgcctctagaataccatgattctattttgttc
tctttctctacttggggctcattattatcactgtcattatcattattatc
ttatctattctagtatttagtattccttcataggagttgagcatacttga
agttctaacataacacccaaatggaaattttcacatctgatgaaatttac
actcaaatttaaaaagtttatatgggttgcattcagtgcatgggctcatt
aacatgctatatttgcataaaactaccttcagtcaacatatatatgatac
atgtggaatgtaaaaattaatttcatgattaaatttggattccatcttca
agatactttaagtatatgcaaaaactatgaaatccaaaactttttgtccc
cagcatttctattagagatactcagcatgtgaattcattctttggacaaa
aacaaggtgttacacgttttgttttgttttgatttgttttaattgtgctt
ttcatttctttttattttatatgtatatttcatttgcatgtatttatgta
caacattttgtgtacctggtgcgtgtggaggccagaagaggctgatcccc
tggagctgaagttatagacagacatgtgtgaactgccatgtgggaactgg
gaactggacctgtgtatctgcagatgagcactactcttaattgttaagcc
atcttgccagacatacagtgtatgtatgtaagacagaggacaacttaatt
actaagcctgtccagaccctattttgattttaaaatagaaacttatcaaa
ggtgctgttaatttgcttgtatgtacagttactagagatcctgatgtagg
atcttggagagaatttaatgcatatatgatttaagtggagtctagtgaag
ggtgaaagtgatcaactcgacgagtcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29716060_29717271
seq2: B6Ng01-062B15.b_48_1224

seq1  GAATTCTATGCCCCACTTCTGCTCAAAAAGAAACAATATTAGTGACACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCCCACTTCTGCTCAAAAAGAAACAATATTAGTGACACTA  50

seq1  GCCCTGGTGATTGTTGGACGGTACTTTAGTCATTAATGAAAGTGAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTGATTGTTGGACGGTACTTTAGTCATTAATGAAAGTGAAACAA  100

seq1  AGTAACCGTTACCTGATCCCTGCTGGGGCAGGGGGCACAGGCTGATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCGTTACCTGATCCCTGCTGGGGCAGGGGGCACAGGCTGATCCCT  150

seq1  GCTGGGGCAGGGGGTATAGGCTGATCCCTGCTGGGGCAGGGGGTACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCAGGGGGTATAGGCTGATCCCTGCTGGGGCAGGGGGTACAGGC  200

seq1  TGATCCCTGCTGGGGCAGGGGGTATAATCCCTGTTAGGGCAGGGGTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGCTGGGGCAGGGGGTATAATCCCTGTTAGGGCAGGGGTATAG  250

seq1  GCTGATGTAAGCAGCGTGCGTCACTTCTCAGAACATGAAATAAACGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTAAGCAGCGTGCGTCACTTCTCAGAACATGAAATAAACGCTTT  300

seq1  CTTTCCATTTGAGACTGTTATTTTAAAATGAAAAGCAAGCAGTAACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTGAGACTGTTATTTTAAAATGAAAAGCAAGCAGTAACACTT  350

seq1  CTCTTTATTCAGTGAAGTGAAATTAACAACACTTAACTTTATATATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTCAGTGAAGTGAAATTAACAACACTTAACTTTATATATAGCT  400

seq1  GATTAACACGTTAAACTTCCCACTCATCTCCCTACTCTAAGGGTACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACACGTTAAACTTCCCACTCATCTCCCTACTCTAAGGGTACCAGT  450

seq1  GTCTTAGGAGAGAACAGAAGAGGGTCACAACACCTTTGAGAATGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGAGAGAACAGAAGAGGGTCACAACACCTTTGAGAATGTGACAA  500

seq1  TCCAAAGACAGTAAGAAGGCTAAGTGACAAACTGACATCTCTTTCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACAGTAAGAAGGCTAAGTGACAAACTGACATCTCTTTCCATTT  550

seq1  AGAATCACCCTGAAAGTGAAGCCACCCCAAAATAACTCAGATGTTCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACCCTGAAAGTGAAGCCACCCCAAAATAACTCAGATGTTCACCA  600

seq1  AAGACCTGGCACGGCACAGCAGACCTGAGAAGATAAATGAGGCCCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGGCACGGCACAGCAGACCTGAGAAGATAAATGAGGCCCTTCTG  650

seq1  TAGGTAACATTACTTCTTGCTATCAATTCCTGGGTCCAGCTATGCGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACATTACTTCTTGCTATCAATTCCTGGGTCCAGCTATGCGGCTG  700

seq1  AGAACTTTAGAATAGCACACACAGGAAAACAAGCACAGCCAGGCAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTAGAATAGCACACACAGGAAAACAAGCACAGCCAGGCAGGCCT  750

seq1  GTGATCCAGCCCTGGGGTCACTAAGGCAGAGCCGCTGCTAAGCCTCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCAGCCCTGGGGTCACTAAGGCAGAGCCGCTGCTAAGCCTCAGGC  800

seq1  CAGCCGAGACTGCACAGCTCAGGATGCCGCAATAACACTCCTGAGGCTGG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGCCGAGACTGCACAGCTCA-GATGCCGCAATAACACTCCTGAGGCTGG  849

seq1  AGACAGCTTGGGGGCAGAGCATGTACAGGTGTCGGGTTCCACCCCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTGGGGGCAGAGCATGTACAGGTGTCGGGTTCCACCCCCACCA  899

seq1  TGACTGGCATGCACAAAAGAACACTCAGGCCTCGGTGAGTTCATCCACAG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGACTGGCATGCACAAAAGAACACTCA-GCCTCGGTGAGTTCATCCACAG  948

seq1  ACAGGATTCAGGTGACAACTATTTTCACTTGCATGAGTTTTCACTTAAGC  1000
      |||||||||| ||||| |||| ||||||||||||||| ||||||||||||
seq2  ACAGGATTCA-GTGAC-ACTA-TTTCACTTGCATGAG-TTTCACTTAAGC  994

seq1  TTCTCTTAGCTTATTATTGATAGATACTTCCTTCATACTATCAGTAGGAG  1050
      |||||||||||   || |||||||||||| ||||||||||||||||||||
seq2  TTCTCTTAGCT--ATAATGATAGATACTT-CTTCATACTATCAGTAGGAG  1041

seq1  TATTATACAATTTTAGGTAAGAATTATTTCTAAACTAGAAATAGAGCATT  1100
      || |||||||||||| || |||  ||||||||||||||||||||||||||
seq2  TA-TATACAATTTTA-GTTAGA--TATTTCTAAACTAGAAATAGAGCATT  1087

seq1  TGGGAGTAAGCATGCAGGAAGCCATAGGGACAATCTGAGAAAAACAAAAG  1150
      | ||||| |||||||||  || ||||  ||| |||||||||||   ||||
seq2  T-GGAGT-AGCATGCAG--AG-CATA--GAC-ATCTGAGAAAA--CAAAG  1127

seq1  TCTTTTTAGTCATTTAAACCATGCATGGTGACACGCTCAGATCAGAAGGC  1200
      | ||||||||||||   | |||||||||    |||||| |||| ||||||
seq2  T-TTTTTAGTCATT---AACATGCATGG----ACGCTC-GATC-GAAGGC  1167

seq1  TCAAGGTCAGCC  1212
      |||  |||||||
seq2  TCA--GTCAGCC  1177

seq1: chr19_29849783_29850983
seq2: B6Ng01-062B15.g_68_1247 (reverse)

seq1  GGTTGACTCGTCTCTGAGTTTGATCAACTTTTTCAACCTTTCACTATGAA  50
      ||||||||||||   ||| |||||| |||||    ||| |||||||   |
seq2  GGTTGACTCGTC---GAG-TTGATC-ACTTT---CACCCTTCACTA--GA  40

seq1  CTCACTGTAAAATCAATTATTGGCTATTAAATCCTCTC--AGATCCTACA  98
      ||| |  | ||||||  |||  || ||||||| |||||  ||||||||||
seq2  CTC-CACTTAAATCA--TATATGC-ATTAAATTCTCTCCAAGATCCTACA  86

seq1  TTCAGAGATCTCTATGTAACTGTACATACAAGCAAAATTTAACAGCACTT  148
       |||| |||||||| |||||||||||||||||||||  |||||||||| |
seq2  -TCAG-GATCTCTA-GTAACTGTACATACAAGCAAA--TTAACAGCACCT  131

seq1  ATGATAAGTTTCTATTTTAAAATCAAAATAAGGGTCTGGGACATGGCTTA  198
       |||||||||||||||||||||||||||| ||||||| ||||| ||||||
seq2  TTGATAAGTTTCTATTTTAAAATCAAAAT-AGGGTCT-GGACA-GGCTTA  178

seq1  GTAATTAAGTTGTCCTCTGTCTTACATACATACACTGTATGTCTGGCAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAGTTGTCCTCTGTCTTACATACATACACTGTATGTCTGGCAAG  228

seq1  ATGGCTTAACAATTAAGAGTAGTTGCTCATCTTGCAGATACACAGGTCCA  298
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  ATGGCTTAACAATTAAGAGTAG-TGCTCATC-TGCAGATACACAGGTCCA  276

seq1  GTTCCCAGTTCCCACATGGCAGTTCACACATGTCTGTCTATAACTTCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGTTCCCACATGGCAGTTCACACATGTCTGTCTATAACTTCAGC  326

seq1  TCCAGGGGATCAGCCTCTTCTGGCCTCCACACGCACCAGGTACAC-AAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCAGGGGATCAGCCTCTTCTGGCCTCCACACGCACCAGGTACACAAAAT  376

seq1  GTTGTACATAAATACATGCAAATGAAATATACATATAAAATAAAAAGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACATAAATACATGCAAATGAAATATACATATAAAATAAAAAGAAA  426

seq1  TGAAAAGCACAATTAAAACAAATCAAAACAAAACAAAACGTGTAACACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCACAATTAAAACAAATCAAAACAAAACAAAACGTGTAACACCT  476

seq1  TGTTTTTGTCCAAAGAATGAATTCACATGCTGAGTATCTCTAATAGAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTCCAAAGAATGAATTCACATGCTGAGTATCTCTAATAGAAAT  526

seq1  GCTGGGGACAAAAAGTTTTGGATTTCATAGTTTTTGCATATACTTAAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACAAAAAGTTTTGGATTTCATAGTTTTTGCATATACTTAAAGT  576

seq1  ATCTTGAAGATGGAATCCAAATTTAATCATGAAATTAATTTTTACATTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAGATGGAATCCAAATTTAATCATGAAATTAATTTTTACATTCC  626

seq1  ACATGTATCATATATATGTTGACTGAAGGTAGTTTTATGCAAATATAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATCATATATATGTTGACTGAAGGTAGTTTTATGCAAATATAGCA  676

seq1  TGTTAATGAGCCCATGCACTGAATGCAACCCATATAAACTTTTTAAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGAGCCCATGCACTGAATGCAACCCATATAAACTTTTTAAATTT  726

seq1  GAGTGTAAATTTCATCAGATGTGAAAATTTCCATTTGGGTGTTATGTTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAATTTCATCAGATGTGAAAATTTCCATTTGGGTGTTATGTTAG  776

seq1  AACTTCAAGTATGCTCAACTCCTATGAAGGAATACTAAATACTAGAATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGTATGCTCAACTCCTATGAAGGAATACTAAATACTAGAATAG  826

seq1  ATAAGATAATAATGATAATGACAGTGATAATAATGAGCCCCAAGTAGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAATAATGATAATGACAGTGATAATAATGAGCCCCAAGTAGAGA  876

seq1  AAGAGAACAAAATAGAATCATGGTATTCTAGAGGCAATACATAAATATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACAAAATAGAATCATGGTATTCTAGAGGCAATACATAAATATCA  926

seq1  ATGAATTATTCTTTGTACTGTTAAAGGAAAATTACCTGTTTCTGAAGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATTCTTTGTACTGTTAAAGGAAAATTACCTGTTTCTGAAGAGA  976

seq1  TGGCAAGAAAAGTAACCAGTGCTTAGGAAAAGAATGAAAGAGGAAATGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAAAGTAACCAGTGCTTAGGAAAAGAATGAAAGAGGAAATGTA  1026

seq1  AGCAGATGAAAAAAAAATTATGACTATTGTTGCTGAATCAGTGTTAAGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGAAAAAAAAATTATGACTATTGTTGCTGAATCAGTGTTAAGGT  1076

seq1  GCCTTTGGTTATTAAGTTAGTGGCATGGTCATTTCTGAAACTCTTCACCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGTTATTAAGTTAGTGGCATGGTCATTTCTGAAACTCTTCACCT  1126

seq1  AATGGAGACACTAAAGAACACACATAGAAAGATGAGAAAATGTCTTCAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGACACTAAAGAACACACATAGAAAGATGAGAAAATGTCTTCAGA  1176

seq1  ATTC  1201
      ||||
seq2  ATTC  1180