BAC Information

Click to search

BAC

Clone NameB6Ng01-062C07
Chromosome19 (Build37)
Map Location 17,808,233 - 17,960,254
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C07.bB6Ng01-062C07.g
ACCDH882628DH882629
length1,153911
definitionDH882628|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C07, 5' end.DH882629|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,959,064 - 17,960,254)(17,808,233 - 17,809,142)
sequence
gaattctcattatctccctaaatcctatttaatctctgctttgacaggta
cccagttagtcacctcctcagagtccaagggcattaaatacactgtagaa
agtgttgagcatagtttgtgggatggaaaacattttccataaaaggaagc
cattatcctgactgattattttaatctctttcattaccttaaggaccata
aagacagggacccaatcatgtttctttgtagctccttggcaaatagtgca
gttcctggcacatagttggcttaataaatgtttattgaagaaatgaagtt
gcttatttcacatttttctttttcctatgccctatggaccccatttggtt
agagtaataattgccatctgaagcaagcatttatatcattgatccaaatt
cctctaaaaaatgcaacctagtatatgcaggagaaacagagtttaaaaat
gacccttactcgtgtctagtacttaagaaaacccatcccaagacctgatt
agattgttggctaaggaccaatcactgcatacatttccacatatgtatgg
aattatattgatgaccctttcataaatcttcttatgttttgtgttcaacg
tcaggttcctccaatcaggactggtgttacatcaacttttgctgaaagca
gagtgatgttggcaattgggaacgcttcaaggccgcttgggagcaggaaa
tagcacaacctaagcttgaagctatgtacttaagagtagttcccattcct
caactaggttagggatagcaaatatttcgcctcatccttgcatccctctg
tgctgtacaacaggaaatgcaatcctctcatcctatgtgtcatcctattt
ggagacgctatagacatgcagctatttagcacttgaaatatggctctcgt
cctgagaactgaattcacttagtgccaatgacctttaagtttaagtagcc
aaacaagtagtgttaagcacagtaaactctagtcctccatcactagagag
aatctgagagaaattaacaatgagtcatgtaacaacgagactcatggtct
atgcagagcttcgttcttatcgaacatctgataataaaggatctgtacat
ttcacggaattattttgtcatctgtgaaaatatcaaacatgtatctgaac
agc
gaattcacatggtatttagaaaagaagaaatgcaaagatgggaccccaga
attagaaatcatcttgcacattgacagagtgattcatgacaggcatcatc
attaaatgagataccttggcaaaggttggcagagaacagaatatttgcac
atcttaaaataccacttctcagatatttcattaattataaagcaaacaag
gcctttatagtgaagaaatctaccaagaagtgagtatatttaacatcgcc
aagttgagacttctgatcacgccacctggcatgaagaattaaagggatat
aatctatccttggcggggtgtgtgctccaaatatttaactcttcatctag
ccttaaatcattaacaaacttcaaagtaagatttattccacaaaaacctg
atcagcacaagagcatcaacattagggggtagaggcaagatgggtctgag
cttcaggcaagctggagccacaaaatgagaccctgtatcaaatgaagaaa
ccagccaaaaacatgcacacagacctgagagactgtgttttgtgactctc
aaccctatttctgaaaggctcattggtatagaaagagttaaggagagtga
cagcagatgacctcaggctctggatcaaaagggatcttttgataatcaac
aacaaaccaccaattcattaaaaatggtactgtggaaaattgtgaagatg
gacagaaaatctgataaaacatcaatttgaacaaataaggactgtaattt
tgattattaaagaatattttctcgattttataatgtctactacatacttt
tagaatctagatgggaaagagaaagacagaggagacagagacagagagac
agaggaaggagaaaggaaaggagaaagaatgagtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17959064_17960254
seq2: B6Ng01-062C07.b_45_1197 (reverse)

seq1  GCTGTTTTAAGATACTATGTTTGTGATTATTTGTCACAGATGACAAAAAT  50
      ||||  || |||||| |||||||    ||||| ||||||||||| |||||
seq2  GCTG--TTCAGATAC-ATGTTTG---ATATTT-TCACAGATGAC-AAAAT  42

seq1  AATCTCCGTGAACATGTAACAGATTCCTGTTATTATTCAGATGTTTCTGA  100
      ||| |||||||| |||| ||||| |||| |||||| |||||||||   ||
seq2  AAT-TCCGTGAA-ATGT-ACAGA-TCCT-TTATTA-TCAGATGTT--CGA  84

seq1  TTAAGAAACGGAAGCTCTTGCATAGGACCAATGAGTCTCGTTTGTTTACA  150
       ||||||   ||||||| |||||| |||| ||||||||||||   |||||
seq2  -TAAGAA--CGAAGCTC-TGCATA-GACC-ATGAGTCTCGTT--GTTACA  126

seq1  ATGGGCCTCATTTGTTTAATTTTCTCTTCAAGATTCTCTCTAGGTGGTGG  200
          | |||| ||||| | || ||||    |||||||||||| ||| |||
seq2  ---TGACTCA-TTGTTAATTTCTCTC----AGATTCTCTCTA-GTGATGG  167

seq1  GGGACTAGAGTTTTACTGTTGCTTAACACTAACCTTGTTTGGCTACTTAA  250
       ||||||||| ||||||| ||||||||||||  |||||||||||||||||
seq2  AGGACTAGAG-TTTACTG-TGCTTAACACTA--CTTGTTTGGCTACTTAA  213

seq1  ACTTAAAGGTCATTGGCACTAAGTGAATTCAGTTCTTCAGGACGAGAGCC  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTAAAGGTCATTGGCACTAAGTGAATTCAGTTC-TCAGGACGAGAGCC  262

seq1  ATATTTCAAGTGCTAAATAGCTGCATGTCTATAGCGTCTCCAAATAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAGTGCTAAATAGCTGCATGTCTATAGCGTCTCCAAATAGGAT  312

seq1  GACACATAGGATGAGAGGATTGCATTTCCTGTTGTACAGCACAGAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAGGATGAGAGGATTGCATTTCCTGTTGTACAGCACAGAGGGAT  362

seq1  GCAAGGATGAGGCGAAATATTTGCTATCCCTAACCTAGTTGAGGAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGAGGCGAAATATTTGCTATCCCTAACCTAGTTGAGGAATGGG  412

seq1  AACTACTCTTAAGTACATAGCTTCAAGCTTAGGTTGTGCTATTTCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCTTAAGTACATAGCTTCAAGCTTAGGTTGTGCTATTTCCTGCT  462

seq1  CCCAAGCGGCCTTGAAGCGTTCCCAATTGCCAACATCACTCTGCTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCGGCCTTGAAGCGTTCCCAATTGCCAACATCACTCTGCTTTCAG  512

seq1  CAAAAGTTGATGTAACACCAGTCCTGATTGGAGGAACCTGACGTTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTGATGTAACACCAGTCCTGATTGGAGGAACCTGACGTTGAACA  562

seq1  CAAAACATAAGAAGATTTATGAAAGGGTCATCAATATAATTCCATACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATAAGAAGATTTATGAAAGGGTCATCAATATAATTCCATACATA  612

seq1  TGTGGAAATGTATGCAGTGATTGGTCCTTAGCCAACAATCTAATCAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATGTATGCAGTGATTGGTCCTTAGCCAACAATCTAATCAGGTC  662

seq1  TTGGGATGGGTTTTCTTAAGTACTAGACACGAGTAAGGGTCATTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGGGTTTTCTTAAGTACTAGACACGAGTAAGGGTCATTTTTAAA  712

seq1  CTCTGTTTCTCCTGCATATACTAGGTTGCATTTTTTAGAGGAATTTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCTCCTGCATATACTAGGTTGCATTTTTTAGAGGAATTTGGAT  762

seq1  CAATGATATAAATGCTTGCTTCAGATGGCAATTATTACTCTAACCAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATATAAATGCTTGCTTCAGATGGCAATTATTACTCTAACCAAATG  812

seq1  GGGTCCATAGGGCATAGGAAAAAGAAAAATGTGAAATAAGCAACTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATAGGGCATAGGAAAAAGAAAAATGTGAAATAAGCAACTTCATT  862

seq1  TCTTCAATAAACATTTATTAAGCCAACTATGTGCCAGGAACTGCACTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATAAACATTTATTAAGCCAACTATGTGCCAGGAACTGCACTATT  912

seq1  TGCCAAGGAGCTACAAAGAAACATGATTGGGTCCCTGTCTTTATGGTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGAGCTACAAAGAAACATGATTGGGTCCCTGTCTTTATGGTCCT  962

seq1  TAAGGTAATGAAAGAGATTAAAATAATCAGTCAGGATAATGGCTTCCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAATGAAAGAGATTAAAATAATCAGTCAGGATAATGGCTTCCTTT  1012

seq1  TATGGAAAATGTTTTCCATCCCACAAACTATGCTCAACACTTTCTACAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAATGTTTTCCATCCCACAAACTATGCTCAACACTTTCTACAGT  1062

seq1  GTATTTAATGCCCTTGGACTCTGAGGAGGTGACTAACTGGGTACCTGTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATGCCCTTGGACTCTGAGGAGGTGACTAACTGGGTACCTGTCA  1112

seq1  AAGCAGAGATTAAATAGGATTTAGGGAGATAATGAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGATTAAATAGGATTTAGGGAGATAATGAGAATTC  1153

seq1: chr19_17808233_17809142
seq2: B6Ng01-062C07.g_71_980

seq1  GAATTCACATGGTATTTAGAAAAGAAGAAATGCAAAGATGGGACCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGTATTTAGAAAAGAAGAAATGCAAAGATGGGACCCCAGA  50

seq1  ATTAGAAATCATCTTGCACATTGACAGAGTGATTCATGACAGGCATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATCATCTTGCACATTGACAGAGTGATTCATGACAGGCATCATC  100

seq1  ATTAAATGAGATACCTTGGCAAAGGTTGGCAGAGAACAGAATATTTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAGATACCTTGGCAAAGGTTGGCAGAGAACAGAATATTTGCAC  150

seq1  ATCTTAAAATACCACTTCTCAGATATTTCATTAATTATAAAGCAAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAATACCACTTCTCAGATATTTCATTAATTATAAAGCAAACAAG  200

seq1  GCCTTTATAGTGAAGAAATCTACCAAGAAGTGAGTATATTTAACATCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATAGTGAAGAAATCTACCAAGAAGTGAGTATATTTAACATCGCC  250

seq1  AAGTTGAGACTTCTGATCACGCCACCTGGCATGAAGAATTAAAGGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGACTTCTGATCACGCCACCTGGCATGAAGAATTAAAGGGATAT  300

seq1  AATCTATCCTTGGCGGGGTGTGTGCTCCAAATATTTAACTCTTCATCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCCTTGGCGGGGTGTGTGCTCCAAATATTTAACTCTTCATCTAG  350

seq1  CCTTAAATCATTAACAAACTTCAAAGTAAGATTTATTCCACAAAAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATCATTAACAAACTTCAAAGTAAGATTTATTCCACAAAAACCTG  400

seq1  ATCAGCACAAGAGCATCAACATTAGGGGGTAGAGGCAAGATGGGTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACAAGAGCATCAACATTAGGGGGTAGAGGCAAGATGGGTCTGAG  450

seq1  CTTCAGGCAAGCTGGAGCCACAAAATGAGACCCTGTATCAAATGAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCAAGCTGGAGCCACAAAATGAGACCCTGTATCAAATGAAGAAA  500

seq1  CCAGCCAAAAACATGCACACAGACCTGAGAGACTGTGTTTTGTGACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAAAACATGCACACAGACCTGAGAGACTGTGTTTTGTGACTCTC  550

seq1  AACCCTATTTCTGAAAGGCTCATTGGTATAGAAAGAGTTAAGGAGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATTTCTGAAAGGCTCATTGGTATAGAAAGAGTTAAGGAGAGTGA  600

seq1  CAGCAGATGACCTCAGGCTCTGGATCAAAAGGGATCTTTTGATAATCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATGACCTCAGGCTCTGGATCAAAAGGGATCTTTTGATAATCAAC  650

seq1  AACAAACCACCAATTCATTAAAAATGGTACTGTGGAAAATTGTGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCACCAATTCATTAAAAATGGTACTGTGGAAAATTGTGAAGATG  700

seq1  GACAGAAAATCTGATAAAACATCAATTTGAACAAATAAGGACTGTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAATCTGATAAAACATCAATTTGAACAAATAAGGACTGTAATTT  750

seq1  TGATTATTAAAGAATATTTTCTCGATTTTATAATGTCTACTACATACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTAAAGAATATTTTCTCGATTTTATAATGTCTACTACATACTTT  800

seq1  TAGAATCTAGATGGGAAAGAGAAAGACAGAGGAGACAGAGACAGAGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTAGATGGGAAAGAGAAAGACAGAGGAGACAGAGACAGAGAGAC  850

seq1  AGAGGAAGGAGAAAGGGAAGGAGAAAGAATGAGTGTGTGTGTGTGTGTGT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGAGAAAGGAAAGGAGAAAGAATGAGTGTGTGTGTGTGTGTGT  900

seq1  GTGTGTGTGT  910
      ||||||||||
seq2  GTGTGTGTGT  910