BAC Information

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BAC

Clone NameB6Ng01-064F13
Chromosome19 (Build37)
Map Location 4,755,662 - 4,929,450
singlet/doubletdoublet
Overlap geneRbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3
Upstream geneSuv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3
Downstream genePeli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064F13.bB6Ng01-064F13.g
ACCDH884163DH884164
length1,072980
definitionDH884163|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F13, 5' end.DH884164|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,928,365 - 4,929,450)(4,755,662 - 4,756,645)
sequence
gaattcccccttataatgacactcaccaatcagaaccaagagctactagc
gctgtggtgacaaggctggccttaagcacatggttgctctggcccctcta
aataggcaaggtaaggaaggtgtgttggatttcagtcccgaaacactacc
tcctacacaactctaggggacagcactacctcttgatggctgcccatccc
ttgggtagacttagtcctgaagtaaagctgacagtgttccagagtaagag
aagtgagctatctaaagtcacacagctggtaggagacagacatctgattg
aaccctagacagcctaagtcaggccccagctctttgcagtgcttaccaca
tctggtcagcaagtacttgcaagagccatgggtcacccagaaagactcct
ccctgactaccaagagtaaacaacatgcttgtctgcatcctgggctgccc
tccagtcaatgtcactggagaccgcttttctattctagctggcaagtggt
cacactaagaaagtgccagctactagctggcctcgacttcaagtgcgttg
aggaaactggggttcccaatgttttaaggatggcttccatggcgacccag
tggagcacctgtagcatttttctgcacccctgggactactggtggatggg
actactattcgcacagcctacatacactctttgtaagagcttcgtagtct
ccaaatagcatctccaaatcctaaatccagggaggagggggtccacatta
ttatagtcttctctaagtggaggttcctaactgccaaatccagtgtaggg
acactggaggtgaaaccccaaagagagcagctcccagctacatgtgtgga
ggctcccgatgtataggaactctcacgtttggggactttgtcagtcccct
ctgtcggtacccgacagcagccacgcgggtactgagaaactcaaactttt
cacaaacatcgcctacgcacgcctctgtgcatgaggccagcagacaaagg
ccaagctcgcggtcttgcaagcagcaccacccgtagcgcttgggggcggg
gaaaaaatagaggggagaactg
gaattcaatccctcaatgtctgtaagcccgctgctttgtgatagtgatcc
accaagctggtaccctgcttgccaccaggaggtgcccttggaccgcaaca
gagagtctggagcctgacaattgcctgtgcctcaggcagcttgggacgga
tgcggaacccttgtcactcattccccaaacctggattctccctggacctc
tggacaacgtattccttggtaatgctcaccacatttcaggaaccaggata
gacagatactacgagggaaagccagcccacgtatattcatgaataaacat
gacaaagtatagtttggatagagaaatgcctccctcagacctaacctagt
tctaacccagattatctttctactccactctcagtctcagcttcttcacc
aatgaacaacactatgccctaggaaaattaaattgttttacgggaattct
taccccttcctacccaaacaagggagagattaggttaagatgtggtagtg
cctgggtttctgaagtatcgctctcagcagccagaggttgagaaaacccc
cttctagcgggcccagtgacacaaccctttgtcatcagccccctcgacag
tgcgcccaataccacgatccattgtgatgcttagagactcccccgggcct
tacggttttgccaaggcaatggttgcttcctgagcccccttgacgcgcaa
gccgcgacccactcccaaggcggtgattggctagcccgggctgggggcgg
gctgaccttcgctccgcagtgccgttcaccacatgaccccgcccccgcac
gggggcggacagttgtgtgcggccgcaggattggtcgccccgctcctgcg
agggggagggggaggcaggcagcgcgactcgcgcgtgctgagctggcgcg
cgagaaagcgcccggtcgcgccgagcctcgagcggccttcgcattttgta
aggtctctctgacgcggacccgccgcaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4928365_4929450
seq2: B6Ng01-064F13.b_46_1117 (reverse)

seq1  CAGTTCCTCCCCTC-ATCTTCTCCCCGCCCCCAAGCGCTACGGGTGGTGC  49
      ||||| |||||||| || || |||||||||||||||||||||||||||| 
seq2  CAGTT-CTCCCCTCTATTTTTTCCCCGCCCCCAAGCGCTACGGGTGGTG-  48

seq1  CTGCCTTGCAAGGACCGCGAGGCCTTGGCCTTTTGTCTGCTGGCCCTCAC  99
      ||| ||||||| |||||||||  ||||||| |||||||||||| ||||| 
seq2  CTG-CTTGCAA-GACCGCGAG--CTTGGCC-TTTGTCTGCTGG-CCTCA-  91

seq1  TGCACAGAGGCGTGGCGTAGGGCGATGTTTGGTGAAAAAGTTTGAGTTTC  149
      ||||||||||||| ||||| |||||||||| ||| |||||||||||||||
seq2  TGCACAGAGGCGT-GCGTA-GGCGATGTTT-GTG-AAAAGTTTGAGTTTC  137

seq1  TCAGTACCCCGCGTGGCTGCTGTCGGGTACCGACAGAGGGGACTGACAAG  199
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGTA-CCCGCGTGGCTGCTGTCGGGTACCGACAGAGGGGACTGACAAA  186

seq1  GTCCCCAAACGTGAGAGTTCCTATACATCGGGAGCCTCCACACATGTAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAAACGTGAGAGTTCCTATACATCGGGAGCCTCCACACATGTAGC  236

seq1  TGGGAGCCTGCTCTCTTTGGGGTTTCACCTCCAGTGTCCCTACCCTGGAT  299
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGGAG-CTGCTCTCTTTGGGGTTTCACCTCCAGTGTCCCTACACTGGAT  285

seq1  TTGGCAGTTAGGAACCTCCACTTAGAGAAGACTATAATAATGTGGACCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTTAGGAACCTCCACTTAGAGAAGACTATAATAATGTGGACCCC  335

seq1  CTCCTCCCTGGATTTAGGATTTGGAGATGCTATTTGGAGACTACGAAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTGGATTTAGGATTTGGAGATGCTATTTGGAGACTACGAAGCT  385

seq1  CTTACAAAGAGTGTATGTAGGCTGTGCGAATAGTAGTCCCATCCACCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGAGTGTATGTAGGCTGTGCGAATAGTAGTCCCATCCACCAGT  435

seq1  AGTCCCAGGGGTGCAGAAAAATGCTACAGGTGCTCCACTGGGTCGCCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGGGGTGCAGAAAAATGCTACAGGTGCTCCACTGGGTCGCCATG  485

seq1  GAAGCCATCCTTAAAACATTGGGAACCCCAGTTTCCTCAACGCACTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATCCTTAAAACATTGGGAACCCCAGTTTCCTCAACGCACTTGAA  535

seq1  GTCGAGGCCAGCTAGTAGCTGGCACTTTCTTAGTGTGACCACTTGCCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGGCCAGCTAGTAGCTGGCACTTTCTTAGTGTGACCACTTGCCAGC  585

seq1  TAGAATAGAAAAGCGGTCTCCAGTGACATTGACTGGAGGGCAGCCCAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGAAAAGCGGTCTCCAGTGACATTGACTGGAGGGCAGCCCAGGA  635

seq1  TGCAGACAAGCATGTTGTTTACTCTTGGTAGTCAGGGAGGAGTCTTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAGCATGTTGTTTACTCTTGGTAGTCAGGGAGGAGTCTTTCTG  685

seq1  GGTGACCCATGGCTCTTGCAAGTACTTGCTGACCAGATGTGGTAAGCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCATGGCTCTTGCAAGTACTTGCTGACCAGATGTGGTAAGCACT  735

seq1  GCAAAGAGCTGGGGCCTGACTTAGGCTGTCTAGGGTTCAATCAGATGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGCTGGGGCCTGACTTAGGCTGTCTAGGGTTCAATCAGATGTCT  785

seq1  GTCTCCTACCAGCTGTGTGACTTTAGATAGCTCACTTCTCTTACTCTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTACCAGCTGTGTGACTTTAGATAGCTCACTTCTCTTACTCTGGA  835

seq1  ACACTGTCAGCTTTACTTCAGGACTAAGTCTACCCAAGGGATGGGCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAGCTTTACTTCAGGACTAAGTCTACCCAAGGGATGGGCAGCC  885

seq1  ATCAAGAGGTAGTGCTGTCCCCTAGAGTTGTGTAGGAGGTAGTGTTTCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGGTAGTGCTGTCCCCTAGAGTTGTGTAGGAGGTAGTGTTTCGG  935

seq1  GACTGAAATCCAACACACCTTCCTTACCTTGCCTATTTAGAGGGGCCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATCCAACACACCTTCCTTACCTTGCCTATTTAGAGGGGCCAGA  985

seq1  GCAACCATGTGCTTAAGGCCAGCCTTGTCACCACAGCGCTAGTAGCTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATGTGCTTAAGGCCAGCCTTGTCACCACAGCGCTAGTAGCTCTT  1035

seq1  GGTTCTGATTGGTGAGTGTCATTATAAGGGGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGATTGGTGAGTGTCATTATAAGGGGGAATTC  1072

seq1: chr19_4755662_4756645
seq2: B6Ng01-064F13.g_68_1047

seq1  GAATTCAATCCCTCAATGTCTGTAAGCCCGCTGCTTTGTGATAGTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTCAATGTCTGTAAGCCCGCTGCTTTGTGATAGTGATCC  50

seq1  ACCAAGCTGGTACCCTGCTTGCCACCAGGAGGTGCCCTTGGACCGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGGTACCCTGCTTGCCACCAGGAGGTGCCCTTGGACCGCAACA  100

seq1  GAGAGTCTGGAGCCTGACAATTGCCTGTGCCTCAGGCAGCTTGGGACGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTGGAGCCTGACAATTGCCTGTGCCTCAGGCAGCTTGGGACGGA  150

seq1  TGCGGAACCCTTGTCACTCATTCCCCAAACCTGGATTCTCCCTGGACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGAACCCTTGTCACTCATTCCCCAAACCTGGATTCTCCCTGGACCTC  200

seq1  TGGACAACGTATTCCTTGGTAATGCTCACCACATTTCAGGAACCAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACGTATTCCTTGGTAATGCTCACCACATTTCAGGAACCAGGATA  250

seq1  GACAGATACTACGAGGGAAAGCCAGCCCACGTATATTCATGAATAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACTACGAGGGAAAGCCAGCCCACGTATATTCATGAATAAACAT  300

seq1  GACAAAGTATAGTTTGGATAGAGAAATGCCTCCCTCAGACCTAACCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTATAGTTTGGATAGAGAAATGCCTCCCTCAGACCTAACCTAGT  350

seq1  TCTAACCCAGATTATCTTTCTACTCCACTCTCAGTCTCAGCTTCTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCAGATTATCTTTCTACTCCACTCTCAGTCTCAGCTTCTTCACC  400

seq1  AATGAACAACACTATTGCAGT--GAAAATTAAATTGTTTTACGGGAATTC  448
      |||||||||||||| |||  |  |||||||||||||||||||||||||||
seq2  AATGAACAACACTA-TGCCCTAGGAAAATTAAATTGTTTTACGGGAATTC  449

seq1  TTACCCCTTCCTACCCAAACAAGGGAGAGATTAGGTTAAGATGTGGTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTTCCTACCCAAACAAGGGAGAGATTAGGTTAAGATGTGGTAGT  499

seq1  GCCTGGGTTTCTGAAGTATCGCTCTCAGCAGCCAGAGGTTGAGAAAACCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTTCTGAAGTATCGCTCTCAGCAGCCAGAGGTTGAGAAAACCC  549

seq1  CCTTCTAGCGGGCCCAGTGACACAACCCTTTGTCATCAGCCCCCTCGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGCGGGCCCAGTGACACAACCCTTTGTCATCAGCCCCCTCGACA  599

seq1  GTGCGCCCAATACCACGATCCATTGTGATGCTTAGAGACTCCCCCGGGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCCAATACCACGATCCATTGTGATGCTTAGAGACTCCCCCGGGCC  649

seq1  TTACGGTTTTGCCAAGGCAATGGTTGCTTCCTGAGCCCCCTTGACGCGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGTTTTGCCAAGGCAATGGTTGCTTCCTGAGCCCCCTTGACGCGCA  699

seq1  AGCCGCGACCCACTCCCAAGGCGGTGATTGGCTAGCCCGGGCTGGGGGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCGACCCACTCCCAAGGCGGTGATTGGCTAGCCCGGGCTGGGGGCG  749

seq1  GGCTGACCTTCGCTCCGCAGTGCCG-TCACCACATGACCCCGCCCCCGCA  797
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTGACCTTCGCTCCGCAGTGCCGTTCACCACATGACCCCGCCCCCGCA  799

seq1  CGGGGGGCGGACAGTTGTGTGCGGCCGCAGGATTGGTCGCCCCGCTCCTG  847
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-GGGGGCGGACAGTTGTGTGCGGCCGCAGGATTGGTCGCCCCGCTCCTG  848

seq1  CGAGGGGGA-GGGGAGGCAGGCAGCGCGCACTCGCGCGTGCGTGAGCTGG  896
      ||||||||| |||||||||||||||||| |||||||||||| ||||||||
seq2  CGAGGGGGAGGGGGAGGCAGGCAGCGCG-ACTCGCGCGTGC-TGAGCTGG  896

seq1  CGCGCGAGAAAGCGCCCGGTCGCGCCGAGGCTCGAGCGGCCGTCGCCATT  946
      ||||||||||||||||||||||||||||| ||||||||||| ||| ||||
seq2  CGCGCGAGAAAGCGCCCGGTCGCGCCGAGCCTCGAGCGGCCTTCG-CATT  945

seq1  TTGTAGGGTTCTCTCTGACGCGGGACCCGCCGCCACCG  984
      ||||| || |||||||||||| |||||||||| |||||
seq2  TTGTAAGG-TCTCTCTGACGC-GGACCCGCCG-CACCG  980