BAC Information

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BAC

Clone NameB6Ng01-065E03
Chromosome19 (Build37)
Map Location 16,922,626 - 17,022,794
singlet/doubletdoublet
Overlap geneFoxb2
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065E03.bB6Ng01-065E03.g
ACCDH884787DH884788
length2871,147
definitionDH884787|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E03, 5' end.DH884788|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,022,508 - 17,022,794)(16,922,626 - 16,923,757)
sequence
agtgtttaatgtgcttctaataacattagtacgtgtgaagtagtaaaata
ggagtggactttacagtttttaagtgcgttttacttctatttctgtgaat
gtgcacactaatgctcatacaagacacacatgcatgcacatgaaagcttt
cagagtggttcttcaaaggggcactagagctagagttgcagttatgaacc
tccatgtgtgggtgctgagaactgaactccagtcctctgcaagagcacca
ggtgggttttggggttttgttttgttttggcgggggg
gaattctgattggcttgaccttgtataagtcttgtgcagacaaccacagc
cactgagactacttcctaagtgtgattgttgcagactatttgatcacatt
gtgagccatgagactgtgaactggaaagacctgtttcttgtttggtgtgg
gtctgtcgtagcacacaccttaacccaagagttttctgtttactgtaaac
aagtagttgtggtatagctcggccctaggatacacctttaacctaagaca
tttctgtaaacaagagttaaagtcaacaataggtcaagaggcagaacaag
caactgattgacagagtaaacataagaacacccaggaaagagaaaggagg
gattttgagttgaagggcatttaagagagcatggagaaggagaccatgtt
tttcttctgagacataggtggaataggaaggtcagctgggtgctttccct
gcctctctgggcaagcaggctttctctacaccctctggttcctgaatctc
catttggtaaattgaatgtttgggattttgttttaaaaatagcttgttat
tggccctgacttttctcataaaaattaaatatcttagaacaaacctaatc
aaggaagtaaaagacttgtataatgaaaaattttgaaacactaaagaaaa
aaatcgatgaagactccaggagatggaaagacttcctacctaggaatgta
acatagttgagaatgcttacgtagcatgcatggagtcctgagcttgatac
acagcactccatatactgggcatgataggttaagcctgtaatcccaacac
tgggaaggtggaagcaggagggttagaacttcaaggtcatcattgtctat
acagtaattctaagtcaagttgggatgcataagaccctgtctcaaatcaa
attaaaggaaaaaaacccactagttttatgttacactaatacacttacgt
ttgtctgctttcgtatatattagaagtctgatggaaactctctacccaga
agaatcaaattatgacaagctgagcttatgttgttagatttttttctttg
tcatttgaggagccgagaactcatctggaagaagactcaactgaaaattg
cttcctcatgacctttgccaagtctgtgaaacaattttgatcaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17022508_17022794
seq2: B6Ng01-065E03.b_52_338 (reverse)

seq1  CCCCCCGCCAAAACAAAACAAAACCCCAAAACCCACCTGGTGCTCTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCCAAAACAAAACAAAACCCCAAAACCCACCTGGTGCTCTTGCA  50

seq1  GAGGACTGGAGTTCAGTTCTCAGCACCCACACATGGAGGTTCATAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGAGTTCAGTTCTCAGCACCCACACATGGAGGTTCATAACTGC  100

seq1  AACTCTAGCTCTAGTGCCCCTTTGAAGAACCACTCTGAAAGCTTTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCTCTAGTGCCCCTTTGAAGAACCACTCTGAAAGCTTTCATGT  150

seq1  GCATGCATGTGTGTCTTGTATGAGCATTAGTGTGCACATTCACAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGTGTGTCTTGTATGAGCATTAGTGTGCACATTCACAGAAATA  200

seq1  GAAGTAAAACGCACTTAAAAACTGTAAAGTCCACTCCTATTTTACTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAACGCACTTAAAAACTGTAAAGTCCACTCCTATTTTACTACTT  250

seq1  CACACGTACTAATGTTATTAGAAGCACATTAAACACT  287
      |||||||||||||||||||||||||||||||||||||
seq2  CACACGTACTAATGTTATTAGAAGCACATTAAACACT  287

seq1: chr19_16922626_16923757
seq2: B6Ng01-065E03.g_115_1214

seq1  AGCCACTGAGACTACTTCCTAAGTGTGATTGTTGCAGACTATTTGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGAGACTACTTCCTAAGTGTGATTGTTGCAGACTATTTGATCAC  50

seq1  ATTGTGAGCCATGAGACTGTGAACTGGAAAGACCTGTTTCTTGTTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCCATGAGACTGTGAACTGGAAAGACCTGTTTCTTGTTTGGTG  100

seq1  TGGGTCTGTCGTAGCACACACCTTAACCCAAGAGTTTTCTGTTTACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGTCGTAGCACACACCTTAACCCAAGAGTTTTCTGTTTACTGTA  150

seq1  AACAAGTAGTTGTGGTATAGCTCGGCCCTAGGATACACCTTTAACCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAGTTGTGGTATAGCTCGGCCCTAGGATACACCTTTAACCTAAG  200

seq1  ACATTTCTGTAAACAAGAGTTAAAGTCAACAATAGGTCAAGAGGCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGTAAACAAGAGTTAAAGTCAACAATAGGTCAAGAGGCAGAAC  250

seq1  AAGCAACTGATTGACAGAGTAAACATAAGAACACCCAGGAAAGAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTGATTGACAGAGTAAACATAAGAACACCCAGGAAAGAGAAAGG  300

seq1  AGGGATTTTGAGTTGAAGGGCATTTAAGAGAGCATGGAGAAGGAGACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTTGAGTTGAAGGGCATTTAAGAGAGCATGGAGAAGGAGACCAT  350

seq1  GTTTTTCTTCTGAGACATAGGTGGAATAGGAAGGTCAGCTGGGTGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTCTGAGACATAGGTGGAATAGGAAGGTCAGCTGGGTGCTTTC  400

seq1  CCTGCCTCTCTGGGCAAGCAGGCTTTCTCTACACCCTCTGGTTCCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCTGGGCAAGCAGGCTTTCTCTACACCCTCTGGTTCCTGAAT  450

seq1  CTCCATTTGGTAAATTGAATGTTTGGGATTTTGTTTTAAAAATAGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTGGTAAATTGAATGTTTGGGATTTTGTTTTAAAAATAGCTTGT  500

seq1  TATTGGCCCTGACTTTTCTCATAAAAATTAAATATCTTAGAACAAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCCCTGACTTTTCTCATAAAAATTAAATATCTTAGAACAAACCTA  550

seq1  ATCAAGGAAGTAAAAGACTTGTATAATGAAAAATTTTGAAACACTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAGTAAAAGACTTGTATAATGAAAAATTTTGAAACACTAAAGA  600

seq1  AAAAAATCGATGAAGACTCCAGGAGATGGAAAGACTTCCTACCTAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCGATGAAGACTCCAGGAGATGGAAAGACTTCCTACCTAGGAAT  650

seq1  GTAACATAGTTGAGAATGCTTACGTAGCATGCATGGAGTCCTGAGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATAGTTGAGAATGCTTACGTAGCATGCATGGAGTCCTGAGCTTGA  700

seq1  TACACAGCACTCCATATACTGGGCATGATAGGTTAAGCCTGTAATCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCACTCCATATACTGGGCATGATAGGTTAAGCCTGTAATCCCAA  750

seq1  CACTGGGAAGGTGGAAGCAGGAGGGTTAGAACTTCAAGGTCATCATTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAGGTGGAAGCAGGAGGGTTAGAACTTCAAGGTCATCATTGTC  800

seq1  TATACAGTAAATTCTAAGTCAAGTTGGGATGCATAAGACCCTGTCTCAAA  850
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TATACAGT-AATTCTAAGTCAAGTTGGGATGCATAAGACCCTGTCTC-AA  848

seq1  ATCAAATTAAAGGAAAAAAAACCCACTAGTTTTATGTTACACTAAATACA  900
      ||||||||||||| ||||||||||||||||||||||||||||| ||||| 
seq2  ATCAAATTAAAGG-AAAAAAACCCACTAGTTTTATGTTACACT-AATAC-  895

seq1  ACTTACGTTTGTCTGCCTTTCGTATTATAATTAGAAGTCTGATGGAAACT  950
      ||||||||||||||| |||||||| ||| |||||||||||||||||||||
seq2  ACTTACGTTTGTCTG-CTTTCGTA-TAT-ATTAGAAGTCTGATGGAAACT  942

seq1  CCTCTACCCCAAGGAAAGAAATCAAAATTATGACAAGCTGAGCTTATGTT  1000
       ||||||||  ||  ||| |||| ||||||||||||||||||||||||||
seq2  -CTCTACCC--AG--AAG-AATC-AAATTATGACAAGCTGAGCTTATGTT  985

seq1  GGTTAGATTTTTTTTTCTTTTGTCAATTTGACAGAAGCCAGAG-ACTCAT  1049
       |||||||||||||    |||||| |||||  || |||| ||| ||||||
seq2  -GTTAGATTTTTTT---CTTTGTC-ATTTG--AGGAGCC-GAGAACTCAT  1027

seq1  CTGGAAAGAGAGACCTCAACTGAGAAAATGCTTTCATCAGATTGACCTGT  1099
      ||||||  |||   ||||||||| ||| ||| ||| |||   |||||| |
seq2  CTGGAAGAAGA---CTCAACTGA-AAATTGC-TTCCTCA---TGACCT-T  1068

seq1  TGGCAAGTCTGTAGAACAACTTTTGATCAATGA  1132
      || |||||||||  ||||| |||||||||||||
seq2  TGCCAAGTCTGTGAAACAA-TTTTGATCAATGA  1100